View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20159_high_9 (Length: 412)
Name: NF20159_high_9
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 3675565 - 3675460
Alignment:
| Q |
17 |
agagacaaatttaagagcttagagaaggatatattcttagtgacaccaggagagcatgcaatgaatgcaaatatggactatatgaatgtgggcactgatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3675565 |
agagacaaatttaagagcttagagaaggatatattcttagtgacaccaggagagcatgcaatgaatgcaaatatggactatatgaatgtgggcactgatt |
3675466 |
T |
|
| Q |
117 |
tggcag |
122 |
Q |
| |
|
|||||| |
|
|
| T |
3675465 |
tggcag |
3675460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 197 - 304
Target Start/End: Complemental strand, 3675383 - 3675276
Alignment:
| Q |
197 |
gattttctttgaatgcttgaatcaactcctttaattttcgtttggtatgttataccaaatatttgtcatttaatgagtttccatttagtctcgtaagaat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
3675383 |
gattttctttgaatgcttgaatcaactcctttaattttcgtttggtatgttataccaaatatttgtcatttaatgagtttccatttaatctcgtaataat |
3675284 |
T |
|
| Q |
297 |
atattaaa |
304 |
Q |
| |
|
|||||||| |
|
|
| T |
3675283 |
atattaaa |
3675276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 3675237 - 3675167
Alignment:
| Q |
342 |
attgcttatccgatgttctccacttgagataattttaaatgtgaatgatcaaacattggtttgtgatgttt |
412 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3675237 |
attgcttatccgaggttctccacttgagataattttaaatgtgaatgatcaaacattggtttgtgatgttt |
3675167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 3665916 - 3665834
Alignment:
| Q |
198 |
attttctttgaatgcttgaatcaactcctttaattttcgtttggtatgttataccaaatatttgtcatttaatgagtttccat |
280 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||| |||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
3665916 |
attttctttgaatgtttgaatcagatccttttattttcgttcagtatgttatataaaatatttgtcatttaattagtttccat |
3665834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University