View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20159_low_1 (Length: 624)

Name: NF20159_low_1
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20159_low_1
NF20159_low_1
[»] chr4 (1 HSPs)
chr4 (1-607)||(48274811-48275417)
[»] chr2 (1 HSPs)
chr2 (315-439)||(25245464-25245588)


Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Complemental strand, 48275417 - 48274811
Alignment:
Q  1 atacaacctaaccttcccctctcaatgatacgtactgcaaaatgcattggtgagtcaaatggatgaaaaacaccagagagaaatctgatgttaaagcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48275417 atacaacctaaccttcccctctcaatgatacgtactgcaaaatgcattggtgagtcaaatggatgataaacaccagagagaaatctgatgttaaagcatc 48275318  T
Q  101 atgctgtacagttgtggaaaaatgaattggaaagcaagaacttccttcattaaaaagcaaatcctcctgttttgcttctataacaatctaaaacgaacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48275317 atgctgtacagttgtggaaaaatgaattggaaagcaagaacttccttcattaaaaagcaaatcctcctgttttgcttctataacaatctaaaacgaacat 48275218  T
Q  201 aataaaaatcatttgttgagttgtgcgtgcaaagaagagggttgtagctgttgattttggcgtttagttgacatggacatagaacgcaattcatcagcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48275217 aataaaaatcatttgttgagttgtgcgtgcaaagaagagggttgtagctgttgattttggcgtttagttgacattgacatagaacgcaattcatcagcaa 48275118  T
Q  301 tgtccgtgaaggtgggtctctctgacggctctgaggaccaacatctctccatcagcaaactccattctggatcacaagattgaggaattggagggcgcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48275117 tgtccgtgaaggtgggtctctctgacggctctgaggaccaacatctctccatcagcaaactccattctggatcacaagattgaggaattggagggcgcaa 48275018  T
Q  401 agtgttgctcacaataccacctgaattatatttggaaaaccaacatgaaactgttcaataactcagacatgtagttaaattgtaaatttaatcaccattt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48275017 agtgttgctcacaataccacctgaattatatttggaaaaccaacatgaaactgttcaataactcagacatgtagttaaattgtaaatttaatcaccattt 48274918  T
Q  501 tagtcatctaaattgcaaggatcaaacaattttggtctcttaaattgtcttaaattgaagaatgtcactcaatttagtcccttcgcaaaaatatccattt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48274917 tagtcatctaaattgcaaggatcaaacaattttggtctcttaaattgtcttaaattgaagaatgtcactcaatttaatcccttcgcaaaaatatccattt 48274818  T
Q  601 aggaaac 607  Q
    |||||||    
T  48274817 aggaaac 48274811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 25245588 - 25245464
Alignment:
Q  315 ggtctctctgacggctctgaggaccaacatctctccatcagcaaactccattctggatcacaagattgaggaattggagggcgcaaagtgttgctcacaa 414  Q
    ||||| ||||| || ||||| ||||| || |||||||||||||  ||||||||||||||||||||||  |||| |||||| |||||||||||| ||||||    
T  25245588 ggtctttctgatggttctgaagaccagcacctctccatcagcactctccattctggatcacaagattctggaactggaggccgcaaagtgttgttcacaa 25245489  T
Q  415 taccacctgaattatatttggaaaa 439  Q
    | ||||||||||||| |||||||||    
T  25245488 ttccacctgaattatgtttggaaaa 25245464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University