View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20159_low_11 (Length: 369)

Name: NF20159_low_11
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20159_low_11
NF20159_low_11
[»] chr4 (1 HSPs)
chr4 (1-356)||(25793304-25793659)
[»] chr3 (12 HSPs)
chr3 (1-110)||(10365757-10365866)
chr3 (20-109)||(10136450-10136539)
chr3 (20-109)||(10212912-10213001)
chr3 (1-106)||(10378208-10378313)
chr3 (26-109)||(10133835-10133918)
chr3 (296-356)||(10075174-10075234)
chr3 (25-109)||(10101994-10102078)
chr3 (296-356)||(10136729-10136789)
chr3 (295-356)||(10377994-10378055)
chr3 (319-356)||(10365522-10365559)
chr3 (51-87)||(10075062-10075098)
chr3 (296-356)||(10134094-10134154)
[»] scaffold0045 (2 HSPs)
scaffold0045 (53-109)||(84896-84952)
scaffold0045 (296-356)||(85807-85867)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 25793304 - 25793659
Alignment:
Q  1 tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793304 tttagggctgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc 25793403  T
Q  101 aattggtaaatttatcatttttcatacataatctgaccactaggaacnnnnnnntattatagagtttcttgaaacggccgaaaatttagtaacttgcagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||| |||||||||||||||||||||||||    
T  25793404 aattggtaaatttatcatttttcatacataatctgaccactaggaacaaaaaaatattaaagagtttcttgaaatggccgaaaatttagtaacttgcagt 25793503  T
Q  201 ccttcaaaatcatgatacggagggagtataatgcttaaatttttgtcccattttctgataatagtttactgcttccatttagtctttcttgaattcaata 300  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793504 ccttccaaatcatgagatggagggagtataatgcttaaatttttgtcccattttctgataatagtttactgcttccatttagtctttcttgaattcaata 25793603  T
Q  301 aaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793604 aaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgat 25793659  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10365866 - 10365757
Alignment:
Q  1 tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc 100  Q
    |||||||||| ||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |  || ||||||||    
T  10365866 tttagggttgcgtttatattgtcgatgcatacaaagtttattggtcaagttgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagc 10365767  T
Q  101 aattggtaaa 110  Q
    | ||||||||    
T  10365766 agttggtaaa 10365757  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10136450 - 10136539
Alignment:
Q  20 tgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa 109  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |  || |||||||||||||||||    
T  10136450 tgtttaagcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagcaattggtaa 10136539  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10212912 - 10213001
Alignment:
Q  20 tgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa 109  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||| || ||||||||||||||    
T  10212912 tgtttaagcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctctggtcgaagcaattggtaa 10213001  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10378313 - 10378208
Alignment:
Q  1 tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc 100  Q
    |||||||||| ||||||||||| ||  ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| |   | ||||||||    
T  10378313 tttagggttgcgtttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagc 10378214  T
Q  101 aattgg 106  Q
    ||||||    
T  10378213 aattgg 10378208  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 10133835 - 10133918
Alignment:
Q  26 agcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa 109  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||| ||| ||| || ||||||||||||||    
T  10133835 agcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaatatggttttgcgtctggtcgaagcaattggtaa 10133918  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 10075174 - 10075234
Alignment:
Q  296 caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgat 356  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10075174 caataaaataaatgaatcttgctgctgcagatgtttatcttgctggtactgttatgttgat 10075234  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 10101994 - 10102078
Alignment:
Q  25 aagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa 109  Q
    |||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||  || || |||||||||||    
T  10101994 aagcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctcaggtcgacgcaattggtaa 10102078  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 10136729 - 10136789
Alignment:
Q  296 caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgat 356  Q
    |||||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  10136729 caataaaataaatgaatcttgctgctgcagatgtttatcttgctggtaccgttatgttgat 10136789  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 10378055 - 10377994
Alignment:
Q  295 tcaataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgat 356  Q
    ||||||||||  ||||||| |  |||||||||||||||||||||||||||||||||||||||    
T  10378055 tcaataaaataaatgaatcctattgctgcagatgtttatcttgctggtactgttatgttgat 10377994  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 10365559 - 10365522
Alignment:
Q  319 gctgcagatgtttatcttgctggtactgttatgttgat 356  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10365559 gctgcagatgtttatcttgctggtactgttatgttgat 10365522  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 10075062 - 10075098
Alignment:
Q  51 tgtgtcaaaggagttcacactggaaagatggttctgc 87  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10075062 tgtgtcaaaggagttcacactggaaatatggttctgc 10075098  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 10134094 - 10134154
Alignment:
Q  296 caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgat 356  Q
    |||||||||  |||| ||||  |||||||||||||||||||||||||||  ||||||||||    
T  10134094 caataaaataaatgagtcttgttgctgcagatgtttatcttgctggtaccattatgttgat 10134154  T

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Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 84896 - 84952
Alignment:
Q  53 tgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa 109  Q
    ||||||||||||||||||||||||||||||||||   || |||||||||||||||||    
T  84896 tgtcaaaggagttcacactggaaagatggttctgaggctggttgaagcaattggtaa 84952  T

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Target: scaffold0045; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 85807 - 85867
Alignment:
Q  296 caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgat 356  Q
    |||||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  85807 caataaaataaatgaatcttgctgctgcaaatgtttatcttgctggtaccgttatgttgat 85867  T

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