View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_12 (Length: 365)
Name: NF20159_low_12
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 12926780 - 12927131
Alignment:
| Q |
7 |
aaagaatccaaatcaaattttgtgatgcaagatttaaatttttgaattcaaactactccggatttaaatatcagac-actcacattttaactttgtgaca |
105 |
Q |
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| T |
12926780 |
aaagaatccaaatcaaattttgtgatgcaagatttaaatttttgaattcatgcaactccggatttaaatatcagacgactcacattttaactttgtgaca |
12926879 |
T |
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| Q |
106 |
atgtatgagtcatatttaaattatatgaaaaatcataacattaaacatgcatgttagtaatcaagatactatgttggcgatagaatagaatataaagtta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12926880 |
atgtatgagtcatatttaaattatatgaaaaatcataacattaagcatgcatgttagtaatcaagataacatgttggcgatagaatagaatataaagtta |
12926979 |
T |
|
| Q |
206 |
aacctgaaaaagcctgttttcaagacaggcaacacgatccatcaatgttcctttaaagtaggcctctttgatagatgcttcagaagattgtttttcagca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12926980 |
aacctgaaaaagcctgttttcaagacaggcaacacgatccatcaatgttcctttaaagtaggcctctttgatagatgcttcagaagattgtttttcagca |
12927079 |
T |
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| Q |
306 |
gcagtaataacattgcttccacatctttgttttctttctaaatacttcatct |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12927080 |
gcagtaataacattgcttccacatctttgttttctttctaaatacttcatct |
12927131 |
T |
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