View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_15 (Length: 341)
Name: NF20159_low_15
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 34696286 - 34696602
Alignment:
| Q |
10 |
aagaatatgtagtacaatagttatcggtaagtgttgttctttattttcttatcaatgttttaaattttgtttaaccatgtcattcatttcacttttctta |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34696286 |
aagaaaatgtagtacaatagttatcggtaagtgttgttctttattttcttatcaatgttttaaattttgtttaaccatgtcattcatttcacttttctta |
34696385 |
T |
|
| Q |
110 |
tattatgcggcaaccacttgactaaaattcaatttctctcaattgaactcaatgtcaagctacaatccaagggacacaatgaagcaaaattgacacattg |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34696386 |
tattatgcagcaaccacttgactaaaattcaatttctctcaattgaactcaatgtcaagctacaatccaagggacacaatgaagcaaaattgacacattg |
34696485 |
T |
|
| Q |
210 |
gcatttcataacctttctaagnnnnnnnnnnnntgattgctttgaatgaaacaatattattatataacaatacataaaatattacttttaaagtaaaatt |
309 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34696486 |
gcatttcataacctttctaagaaaaacaaaaaatgattgctttgaatgaaacaatattattatataacaatacataaaatattacttttaaagtaaaatt |
34696585 |
T |
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| Q |
310 |
gaattaatagtgccttg |
326 |
Q |
| |
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||||||||||||||||| |
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| T |
34696586 |
gaattaatagtgccttg |
34696602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 26993928 - 26994244
Alignment:
| Q |
10 |
aagaatatgtagtacaatagttatcggtaagtgttgttctttattttcttatcaatgttttaaattttgtttaaccatgtcattcatttcacttttctta |
109 |
Q |
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| T |
26993928 |
aagaaaatgtagtacaatagttatcggtaagtgtttttctttattttcttatcattgttttaaattttgtttaaccatatcattcatttcacttttctta |
26994027 |
T |
|
| Q |
110 |
tattatgcggcaaccacttgactaaaattcaatttctctcaattgaactcaatgtcaagctacaatccaagggacacaatgaagcaaaattgacacattg |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26994028 |
tattatgcagcaaccacttgactaaaattcaatttctctcaattgaactcaatgtcaagctacaatccaagggacacaatgaagcaaaattgacacattg |
26994127 |
T |
|
| Q |
210 |
gcatttcataacctttctaagnnnnnnnnnnnntgattgctttgaatgaaacaatattattatataacaatacataaaatattacttttaaagtaaaatt |
309 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26994128 |
gcatttcataacctttctaagaaaaacaaaaaatgattgctttgaatgaaacaataatattatataacaatacataaaatattacttttaaagtaaaatt |
26994227 |
T |
|
| Q |
310 |
gaattaatagtgccttg |
326 |
Q |
| |
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||||||||||||||||| |
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| T |
26994228 |
gaattaatagtgccttg |
26994244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 27066191 - 27065981
Alignment:
| Q |
9 |
gaagaatatgtagtacaatagttatcggtaagtgttgttctttattttcttatcaatgttttaaattttgtttaaccatgtcattcatttcacttttctt |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27066191 |
gaagaaaatgtagtacaatagttatcggtaagtgtttttctttattttcttatcaatgttttaaattttgtttaac--------tcatttcacttttctt |
27066100 |
T |
|
| Q |
109 |
atattatgcggcaaccacttgactaaaattcaatttctctcaattgaactcaatgtcaagctacaatccaagggacacaatgaagcaaaattgacacatt |
208 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
27066099 |
atattatgcagcaaccactttactaaaattcaatttctctcaatggaactcaccatcaagctacaattcaagggacacaatgaagcaaaactgacacatt |
27066000 |
T |
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| Q |
209 |
ggcatttcataacctttct |
227 |
Q |
| |
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||||||||||||||||||| |
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| T |
27065999 |
ggcatttcataacctttct |
27065981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 27065912 - 27065864
Alignment:
| Q |
278 |
aatacataaaatattacttttaaagtaaaattgaattaatagtgccttg |
326 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||| ||||||||||||||| |
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|
| T |
27065912 |
aatacatgaaatgttacttttaaaggaaaattggattaatagtgccttg |
27065864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 8144416 - 8144275
Alignment:
| Q |
46 |
ttctttattttcttatcaatgttttaaattttgtttaaccatgtcattcatttcacttttcttatattatgcggcaaccacttgactaaaattcaatttc |
145 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |
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| T |
8144416 |
ttctttctttacttatcaatgttttaaatt--gtttaactatatcattcatttcacttttcttatattatgcagcaaccacctaacctcaattcaatttc |
8144319 |
T |
|
| Q |
146 |
tctcaattgaactcaatgtcaagctacaatccaagggacacaat |
189 |
Q |
| |
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||||||| ||||||| ||||||| |||| ||||||||||||| |
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| T |
8144318 |
tctcaatggaactcatcatcaagcttcaattcaagggacacaat |
8144275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 8144199 - 8144163
Alignment:
| Q |
157 |
ctcaatgtcaagctacaatccaagggacacaatgaag |
193 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
8144199 |
ctcaatgtcaagctacaatccaaggggcacaatgaag |
8144163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 28213020 - 28212881
Alignment:
| Q |
48 |
ctttattttcttatcaatgttttaaattttgtttaaccatgtcattcatttcacttttcttatattatgcggcaaccacttgactaaaattcaatttctc |
147 |
Q |
| |
|
|||| ||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| | || ||||||||||||| |
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| T |
28213020 |
ctttctttacttatcaatgttttaaatt--gtttaactatatcattcatttcacttttcttatattatgcagcaaccacctaacctcaattcaatttctc |
28212923 |
T |
|
| Q |
148 |
tcaattgaactcaatgtcaagctacaatccaagggacacaat |
189 |
Q |
| |
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||||| ||||||| ||||||| |||| ||||||||||||| |
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| T |
28212922 |
tcaatggaactcatcatcaagcttcaattcaagggacacaat |
28212881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 28212805 - 28212769
Alignment:
| Q |
157 |
ctcaatgtcaagctacaatccaagggacacaatgaag |
193 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
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|
| T |
28212805 |
ctcaatgtcaagctacaatccaaggggcacaatgaag |
28212769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 30828872 - 30829013
Alignment:
| Q |
46 |
ttctttattttcttatcaatgttttaaattttgtttaaccatgtcattcatttcacttttcttatattatgcggcaaccacttgactaaaattcaatttc |
145 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||| ||||||| || |||||||||||| |||||||||||||||| |||||||| | || ||||||||||| |
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| T |
30828872 |
ttctttctttacttatcaatgtttcaaatt--gtttaactatatcattcatttcatttttcttatattatgcagcaaccacctaacctcaattcaatttc |
30828969 |
T |
|
| Q |
146 |
tctcaattgaactcaatgtcaagctacaatccaagggacacaat |
189 |
Q |
| |
|
||||||| ||||||| ||||||| |||| ||| ||||||||| |
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|
| T |
30828970 |
tctcaatggaactcatcatcaagcttcaattcaaaggacacaat |
30829013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 30829089 - 30829125
Alignment:
| Q |
157 |
ctcaatgtcaagctacaatccaagggacacaatgaag |
193 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
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|
| T |
30829089 |
ctcaatgtcaagctacaatccaaggggcacaatgaag |
30829125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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