View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20159_low_16 (Length: 302)

Name: NF20159_low_16
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20159_low_16
NF20159_low_16
[»] chr4 (19 HSPs)
chr4 (10-302)||(3932948-3933240)
chr4 (10-302)||(3817448-3817740)
chr4 (10-302)||(3919724-3920016)
chr4 (210-302)||(3987059-3987151)
chr4 (13-107)||(4218498-4218592)
chr4 (10-107)||(4009848-4009945)
chr4 (10-118)||(3801438-3801546)
chr4 (10-140)||(3986847-3986977)
chr4 (202-302)||(3810072-3810172)
chr4 (10-113)||(4002151-4002254)
chr4 (238-302)||(3801678-3801742)
chr4 (226-302)||(4010076-4010152)
chr4 (10-129)||(4025078-4025197)
chr4 (10-134)||(3809868-3809992)
chr4 (10-62)||(3955714-3955766)
chr4 (219-302)||(4025299-4025382)
chr4 (238-302)||(4218735-4218799)
chr4 (79-129)||(3954560-3954610)
chr4 (73-110)||(3963448-3963485)
[»] chr5 (2 HSPs)
chr5 (10-129)||(13397802-13397921)
chr5 (219-299)||(13398023-13398103)
[»] chr8 (3 HSPs)
chr8 (76-112)||(7023411-7023447)
chr8 (76-112)||(7075417-7075453)
chr8 (79-112)||(7036509-7036542)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 3933240 - 3932948
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3933240 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 3933141  T
Q  110 ggccgatccatctctcaataccactggacaattctttcacagattctttcaatagttcagataaaaggctttcctttaaagatccaatcccaccatgtgt 209  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3933140 ggccgatccgtctctcaataccactggacaattctttaacagattctttcaatagttcagataaaaggctttcctttaaagatccaatcccaccatgtgc 3933041  T
Q  210 ttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3933040 ttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 3932948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 3817448 - 3817740
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||||||||||||  || ||||||||||||||| ||||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||| |||||||    
T  3817448 attattctactatcagattgaaaccaatcaagagttccaaataacatctcgagctgatctgtctccttgacatcatcaagaacgataagaaccttcatgc 3817547  T
Q  110 ggccgatccatctctcaataccactggacaattctttcacagattctttcaatagttcagataaaaggctttcctttaaagatccaatcccaccatgtgt 209  Q
    |||  |||| |||||  ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  3817548 ggctaatccgtctctttatatcaccggacaattctttcacagactctttcaatagttcagataaaaggctttcctttaaacatccaactccaccatgtgt 3817647  T
Q  210 ttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817648 ttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 3817740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 3920016 - 3919724
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||||||||||||  || ||||||||||||||| ||||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||| |||||||    
T  3920016 attattctactatcagattgaaaccaatcaagagttccaaataacatctcgagctgatctgtctccttgacatcatcaagaacgataagaaccttcatgc 3919917  T
Q  110 ggccgatccatctctcaataccactggacaattctttcacagattctttcaatagttcagataaaaggctttcctttaaagatccaatcccaccatgtgt 209  Q
    |||  |||| |||||  ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||     
T  3919916 ggctaatccgtctctttatatcaccggacaattctttcacagactctttcaatagttcagataaaaggctttcctttaaacatccaactccaccatgtgc 3919817  T
Q  210 ttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3919816 ttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 3919724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 3987059 - 3987151
Alignment:
Q  210 ttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 302  Q
    ||||||| ||||||| |||||| |||| ||||||||||||||||| || || ||||||||| |||| ||||||||||||||||||||||||||    
T  3987059 ttttaacttttcactcacctttgccaaaaaacaacaaccatcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgcc 3987151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 4218498 - 4218592
Alignment:
Q  13 attctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcat 107  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||||||||| ||  ||| || | ||||||||||||||||||||| |||||    
T  4218498 attctactatcggatcgaaaccaatcaagagttccaaataacatctctagcagaccttcttccttaatatcatcaagaacaataagaaccttcat 4218592  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 4009848 - 4009945
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcat 107  Q
    ||||||||||||||  |||||||||||||||||| || |||||||||||||||| || ||  ||| || ||||||||||||||||||||||| |||||    
T  4009848 attattctactatcggatcgaaaccaatcaagagttctaaataacatctctagctgaccttcttccttaacatcatcaagaacaataagaaccttcat 4009945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 3801438 - 3801546
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||||||||||||  || ||||||||||||||| |||||||||||||||||||||| ||  ||| || | |||||||||| |||||||||| ||||| |    
T  3801438 attattctactatcagattgaaaccaatcaagagttccaaataacatctctagcagaccttcttccttaatatcatcaagatcaataagaaccttcatac 3801537  T
Q  110 ggccgatcc 118  Q
    |||| ||||    
T  3801538 ggccaatcc 3801546  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 3986847 - 3986977
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||||||||||||| || ||||||| ||||||| | | ||||||||||||||| |||||   || || |||||||||||||  |||||||| |||||||    
T  3986847 attattctactatctgattgaaaccagtcaagagtttcgaataacatctctagctgatcttcgtccttaacatcatcaagaatgataagaaccttcatgc 3986946  T
Q  110 ggccgatccatctctcaataccactggacaa 140  Q
    | || || | |||||||||| ||||||||||    
T  3986947 gtccaattcgtctctcaatatcactggacaa 3986977  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 3810072 - 3810172
Alignment:
Q  202 ccatgtgtttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgc 301  Q
    |||||| || |||||  |||||| ||||||||||||||||||||||||||||| || |||| | |||||  ||||| ||||| |||||||||||||||||    
T  3810072 ccatgtcttgttaactcttcacttaccttttccaagaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgc 3810171  T
Q  302 c 302  Q
    |    
T  3810172 c 3810172  T

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Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 4002151 - 4002254
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||| ||||||||  |||||||||||||||||| |||||||||||||||||   || ||  ||| || ||||||||||||||||||||||| ||||| |    
T  4002151 attatcctactatcggatcgaaaccaatcaagagttccaaataacatctctatttgaccttcttccttaacatcatcaagaacaataagaaccttcatac 4002250  T
Q  110 ggcc 113  Q
    ||||    
T  4002251 ggcc 4002254  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 3801678 - 3801742
Alignment:
Q  238 aaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 302  Q
    ||||||||||||||||| ||  | ||||||||| |||||||||||||||||||||||||||||||    
T  3801678 aaacaacaaccatcatattcaaagcgattttggttaaatatttcttctgcaatagttgtcttgcc 3801742  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 4010076 - 4010152
Alignment:
Q  226 accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 302  Q
    ||||||||||| ||||||||||| ||||| || || | ||||||| |||| |||||| |||||||||||||||||||    
T  4010076 accttttccaaaaaacaacaaccttcatattcagagcaattttggttaaaaatttctcctgcaatagttgtcttgcc 4010152  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 4025078 - 4025197
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||| ||||||||  || ||| ||||||||| | ||||||||||||||||| | || ||  ||| || || ||||||||||||||||| || ||||| |    
T  4025078 attatcctactatcagatagaagccaatcaagtgttccaaataacatctctatctgaccttcttccttaacgtcatcaagaacaataaggaccttcatac 4025177  T
Q  110 ggccgatccatctctcaata 129  Q
    |||| |||| ||||||||||    
T  4025178 ggccaatccttctctcaata 4025197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 3809868 - 3809992
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||||||||||||  || |||||||||||  |  |||||||||  | || ||| |||||||  | ||||| ||||||||||| |||||||| |||||||    
T  3809868 attattctactatcatattgaaaccaatcacaacttccaaataatttttccagctgatctgtacccttgacgtcatcaagaacgataagaaccttcatgc 3809967  T
Q  110 ggccgatccatctctcaataccact 134  Q
    |||| ||||  ||||||||| ||||    
T  3809968 ggccaatccgcctctcaatatcact 3809992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 3955766 - 3955714
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctag 62  Q
    ||||||||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  3955766 attattctactatcagatcgaaaccaatcaagagttccaaataaaatctctag 3955714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 4025299 - 4025382
Alignment:
Q  219 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 302  Q
    |||||| |||||| |||| ||||||||||| ||||| || || | ||||||  |||| |||||||| |||||||||||||||||    
T  4025299 ttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgcc 4025382  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 4218735 - 4218799
Alignment:
Q  238 aaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgcc 302  Q
    ||||||||||||||||| || |||| | |||||  ||||| ||||| ||||||||||||||||||    
T  4218735 aaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgcc 4218799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 3954610 - 3954560
Alignment:
Q  79 acatcatcaagaacaataagaactttcatgcggccgatccatctctcaata 129  Q
    ||||||||||||||||||||||| ||||| ||||| |||| ||||| ||||    
T  3954610 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaata 3954560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 3963485 - 3963448
Alignment:
Q  73 tcattgacatcatcaagaacaataagaactttcatgcg 110  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  3963485 tcattcacatcatctagaacaataagaactttcatgcg 3963448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 13397802 - 13397921
Alignment:
Q  10 attattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgc 109  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||||||| ||| || ||  |||  | ||||||||||||||||||||||| |||||      
T  13397802 attattctactatcagatcgaaaccaatcaagagttccaaataacatctccagctgaccttcttccgtaacatcatcaagaacaataagaaccttcatat 13397901  T
Q  110 ggccgatccatctctcaata 129  Q
    |||| |||| ||||| ||||    
T  13397902 ggccaatccttctctgaata 13397921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 13398023 - 13398103
Alignment:
Q  219 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtctt 299  Q
    |||||| |||||| |||| |||||||| || ||||| || |||| | ||||  |||| |||||||| ||||||||||||||    
T  13398023 ttcactcacctttgccaaaaaacaacatccttcatattcagaacaaatttgattaaaaatttcttcggcaatagttgtctt 13398103  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 7023447 - 7023411
Alignment:
Q  76 ttgacatcatcaagaacaataagaactttcatgcggc 112  Q
    |||||||||||||||||||||||||| ||||||||||    
T  7023447 ttgacatcatcaagaacaataagaaccttcatgcggc 7023411  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 7075417 - 7075453
Alignment:
Q  76 ttgacatcatcaagaacaataagaactttcatgcggc 112  Q
    |||||||||||||||||||||||||| ||||||||||    
T  7075417 ttgacatcatcaagaacaataagaaccttcatgcggc 7075453  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 7036542 - 7036509
Alignment:
Q  79 acatcatcaagaacaataagaactttcatgcggc 112  Q
    ||||||||||||||||||||||| ||||||||||    
T  7036542 acatcatcaagaacaataagaaccttcatgcggc 7036509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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