View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_18 (Length: 279)
Name: NF20159_low_18
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 279
Target Start/End: Complemental strand, 7221092 - 7220839
Alignment:
| Q |
22 |
atatatggagtgactatctaatatttggatggtaattaaacagatggattacatattaggaaaaaatcctgaaggaagatcatatatggtaggatttggg |
121 |
Q |
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| T |
7221092 |
atatatagagtgactatctaatatttggatggtaa----acagatggattacatattaggaaaaaatcctgaaggaagatcatatatggtaggttttggg |
7220997 |
T |
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| Q |
122 |
aaaaatccaccaacacaagctcaccatagaggtgcttcagtgccaaatttgtcaccaaatgaagagataaactgtcccacaagctttaagaaatggctag |
221 |
Q |
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| T |
7220996 |
aaaaatccaccaacacaagctcaccatagaggtgcttcagtgccaaatttgtcaccaaacgaagagataaactgtcccacaagctttaagaaatggctag |
7220897 |
T |
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| Q |
222 |
aaagagatgcaccaaatccacacgagctaactggggccattgttggtggacctgacat |
279 |
Q |
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| T |
7220896 |
aaagagatgcaccaaatccacatgagctaactggggccattgttggtggacctgacat |
7220839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 60 - 279
Target Start/End: Complemental strand, 48525560 - 48525341
Alignment:
| Q |
60 |
aacagatggattacatattaggaaaaaatcctgaaggaagatcatatatggtaggatttgggaaaaatccaccaacacaagctcaccatagaggtgcttc |
159 |
Q |
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| T |
48525560 |
aacagatggattacatattggggaaaaacccagaaggaagatcatacatggtaggattcgggaaaaatccacccacacaagctcaccatagaggtgcttc |
48525461 |
T |
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| Q |
160 |
agtgccaaatttgtcaccaaatgaagagataaactgtcccacaagctttaagaaatggctagaaagagatgcaccaaatccacacgagctaactggggcc |
259 |
Q |
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| T |
48525460 |
agtgccaaagttgtcaccaaacgaagatataaattgtcctatgagcttttcgaagtggctgaaaagagatggaccaaatccacatgagctaactggagct |
48525361 |
T |
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| Q |
260 |
attgttggtggacctgacat |
279 |
Q |
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| T |
48525360 |
attgtaggtggacctgacat |
48525341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 50308082 - 50308222
Alignment:
| Q |
58 |
taaacagatggattacatattaggaaaaaatcctgaaggaagatcatatatggtaggatttgggaaaaatccaccaacacaagctcaccatagaggtgct |
157 |
Q |
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| T |
50308082 |
taaatagatgaattacatattggggaaaaatgcataaggaagatcatacatggttggatttggaaaaaatccaccgacacaagctcaccatagaggtgct |
50308181 |
T |
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| Q |
158 |
tcagtgccaaatttgtcaccaaatgaagagataaactgtcc |
198 |
Q |
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| T |
50308182 |
tcagtgccaaagttatcacctaacgaatagatagactgtcc |
50308222 |
T |
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