View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_2 (Length: 566)
Name: NF20159_low_2
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Complemental strand, 15153073 - 15152543
Alignment:
| Q |
20 |
ggtgtgggggtatttaattattctttttcctgtttacatgtcatgatttgcactatgttttgtaacatttatcgtcaccaaccactgcattatagttcaa |
119 |
Q |
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| T |
15153073 |
ggtgtgggggtatttaattattctttttcctgtttacatgtcatgatttgcactatgttttgtaacatttatcgtcaccaaccactgcattatagttcaa |
15152974 |
T |
|
| Q |
120 |
tgggggtccattttttgggagacatgcaagatggtcagggatcaataaagtggggtcccttctgtatttttgggccatggcccactaactttacagccta |
219 |
Q |
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| T |
15152973 |
tgggggtccattttttgggagacatgcaagatggtcagggatcaataaagtggggtcccttctgtatttttgggccatggcccactaactttacagccta |
15152874 |
T |
|
| Q |
220 |
attggatatatgaatctaaataaattctaaaggtacgtatcccaaatctcatataagcatagcatgtaccatgttttatcacgaaaaacttcaatatacg |
319 |
Q |
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| T |
15152873 |
attggatatatgaatctaaataaattctaaaggtacgtatcccaaatctcatataagcatagcatgtaccatgttttatcacgaaaaacttcaacatacg |
15152774 |
T |
|
| Q |
320 |
tacgttggaattattcatcatgaattattattgatcttgaactcaaagaatattgtatattgatgggcctgatgggtttagaacttgatgagtggataat |
419 |
Q |
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| T |
15152773 |
tacgttggaattattcatcatgaattattattgatcttgaactcaaagaatattgtatattgatgggcctgatgggtttagaacttgatgagtggataat |
15152674 |
T |
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| Q |
420 |
gaatttaatgaag-nnnnnnnnttcaatgagtgctataagcatgaaggagaatattttgtaaaaaatgtgctcccccattgtcatatgttcaaattttta |
518 |
Q |
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| T |
15152673 |
gaatttaatgaagaaaaaaaaaatcaatgagtgctgtaagcatgaaggagaatattttgaaaaaaatgtgctcccccattgtcatatgttcaaattttta |
15152574 |
T |
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| Q |
519 |
gttacattttggccataccaccatgtgatat |
549 |
Q |
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| T |
15152573 |
gttacattttggccataccaccatgtgatat |
15152543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 30659006 - 30659088
Alignment:
| Q |
20 |
ggtgtgggggtatttaattattctttttcctgtttacatgtcatgatttgcactatgttttgtaacatttatcgtcaccaacca |
103 |
Q |
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| T |
30659006 |
ggtgtgggggtatttaattattctttttactgtttacatgtcatggtttgcactgt-tttttaaacatttatcgtcaccaacca |
30659088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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