View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_20 (Length: 261)
Name: NF20159_low_20
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 36805616 - 36805376
Alignment:
| Q |
7 |
ttgagctcaatcacttggttatgaggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaaaaaactatttttaatactcactttcatg |
106 |
Q |
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| T |
36805616 |
ttgagctcaatcacttggttatgaggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaagaaactatttttaatactcactttcatg |
36805517 |
T |
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| Q |
107 |
tctcacgtgaaacttgggttaaattctcacattatcatactttacactgttaaattactatgttaaatgaatttgaatctcactaaagttagctcacaag |
206 |
Q |
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| T |
36805516 |
tctcacgtgaaacttgagttaaattctcacattatcatactttacgccgttaaattactatgttaaatgaatttgaatctcattaaagttagctcacaag |
36805417 |
T |
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| Q |
207 |
atgaggatgaccaactcc----acacgtctaacaatctaag |
243 |
Q |
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| T |
36805416 |
atgatgatgatcaactccatatacatgtctaacaatctaag |
36805376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 36515675 - 36515878
Alignment:
| Q |
30 |
aggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaaaaaactatttttaatactcactttcatgtctcacgtgaaacttgggttaaa |
129 |
Q |
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| T |
36515675 |
aggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaagaaactatttttaatactca-------------cgtgaaacttgggttaaa |
36515761 |
T |
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| Q |
130 |
ttctcacattatcatactttacactgttaaattactatgttaaatgaatttgaatctcactaaagttagctcacaagatgaggatgaccaactcc----a |
225 |
Q |
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| T |
36515762 |
ttctcacattatcatattttacactgctcaattactatgttaaatgaatttgaatctcactaaagttagctcacaagatgaggatgaccaactccatata |
36515861 |
T |
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| Q |
226 |
cacgtctaacaatctaa |
242 |
Q |
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| T |
36515862 |
cacgtctaacaatctaa |
36515878 |
T |
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Back To:
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