View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_25 (Length: 238)
Name: NF20159_low_25
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 7220819 - 7220684
Alignment:
| Q |
1 |
aaacgtacagattcgcctaagacggaaccttgcacatatgttaattcccttgcagccggtgttctagcaaagcttgcttctttgggttaacttagcttaa |
100 |
Q |
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| T |
7220819 |
aaacgtacagattcacctaagacggaaccttgcacatatgttaattcccttgcagtcggtgttctagcaaagcttgcttctttgggttaacttagcttaa |
7220720 |
T |
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| Q |
101 |
tttcatgttagtgtaattactccaacgttgttaaaa |
136 |
Q |
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| T |
7220719 |
tttcatgttggtgtaattaccccaacgttgttaaaa |
7220684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 48525318 - 48525212
Alignment:
| Q |
4 |
cgtacagattcgcctaagacggaaccttgcacatatgttaattcccttgcagccggtgttctagcaaagcttgcttctttgggttaacttagcttaattt |
103 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
48525318 |
cgtacagattcacctaagactgaaccttgcacatatgttaattctcttgcagctggtgctctagcaaagcttgcttctttgggttaacttagcttaatgt |
48525219 |
T |
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| Q |
104 |
catgtta |
110 |
Q |
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|| |||| |
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| T |
48525218 |
cacgtta |
48525212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 50308244 - 50308350
Alignment:
| Q |
4 |
cgtacagattcgcctaagacggaaccttgcacatatgttaattcccttgcagccggtgttctagcaaagcttgcttctttgggttaacttagcttaattt |
103 |
Q |
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||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||| |||| ||| ||||||||||| ||||||| ||||||||||| |
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| T |
50308244 |
cgtacggattcacctaagactgaaccttgcacgtatgttaattcgcttgcagttggtgctctaataaaacttgcttctttaggttaacctagcttaattt |
50308343 |
T |
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| Q |
104 |
catgtta |
110 |
Q |
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||||||| |
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| T |
50308344 |
catgtta |
50308350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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