View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20159_low_27 (Length: 235)

Name: NF20159_low_27
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20159_low_27
NF20159_low_27
[»] chr6 (6 HSPs)
chr6 (60-220)||(34245051-34245210)
chr6 (31-102)||(30579959-30580030)
chr6 (31-148)||(13213936-13214042)
chr6 (15-65)||(34244794-34244844)
chr6 (108-147)||(30579804-30579843)
chr6 (159-215)||(29138705-29138761)
[»] chr4 (5 HSPs)
chr4 (18-148)||(15041560-15041690)
chr4 (18-148)||(15112734-15112864)
chr4 (18-147)||(15039832-15039961)
chr4 (18-147)||(15114463-15114592)
chr4 (15-147)||(16003564-16003695)
[»] chr7 (3 HSPs)
chr7 (18-147)||(20186174-20186302)
chr7 (18-148)||(10866334-10866464)
chr7 (18-147)||(10868051-10868181)
[»] chr5 (2 HSPs)
chr5 (30-150)||(33566689-33566809)
chr5 (54-111)||(25598148-25598205)
[»] chr3 (2 HSPs)
chr3 (49-148)||(8584492-8584591)
chr3 (31-143)||(19844661-19844773)
[»] chr8 (2 HSPs)
chr8 (31-147)||(22692478-22692592)
chr8 (18-145)||(30187685-30187808)
[»] scaffold0590 (1 HSPs)
scaffold0590 (64-140)||(53-129)
[»] scaffold0275 (1 HSPs)
scaffold0275 (64-140)||(3846-3922)
[»] chr1 (1 HSPs)
chr1 (30-141)||(17309720-17309833)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 34245051 - 34245210
Alignment:
Q  60 tctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatatattgttctcgc 159  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34245051 tctaagggttttccctatgtttcttcctatcaatcatacttctcctataaagctaatctacatctattcgatcctattatttctgatatattgttctcgc 34245150  T
Q  160 tgtgctgaggaagtttctgaccttttaccctacactttgaagagggcgggtaaattcctta 220  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34245151 tgtgctgagg-agtttctgaccttttaccctacactttgaagagggcgggtaaattcctta 34245210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 30580030 - 30579959
Alignment:
Q  31 aatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttct 102  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  30580030 aatctttttcattacaattcataatgaattctaagggttttctctatgtttcttcctctcaatcatgcttct 30579959  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 13214042 - 13213936
Alignment:
Q  31 aatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcga 130  Q
    ||||||||| ||||||||||||||||||||||           ||||||||||||||||||||||||||||| |||||||||||||||  |||| || ||    
T  13214042 aatcttttttaatacaattcataatgaattct-----------ctatgtttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttga 13213954  T
Q  131 tcctattatttctgatat 148  Q
    ||||||||||| ||||||    
T  13213953 tcctattatttgtgatat 13213936  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 34244794 - 34244844
Alignment:
Q  15 atatactcattcatataatctttttcaatacaattcataatgaattctaag 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34244794 atatactcattcatataatctttttcaatacaattcataatgaattctaag 34244844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 30579843 - 30579804
Alignment:
Q  108 gaagctaatctacatctattcgatcctattatttctgata 147  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  30579843 gaagctaatctacatctattcgatcctattatttatgata 30579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 29138705 - 29138761
Alignment:
Q  159 ctgtgctgaggaagtttctgaccttttaccctacactttgaagagggcgggtaaatt 215  Q
    |||||||  ||| ||||| || |||||||||||||||||||||||||| ||||||||    
T  29138705 ctgtgctagggatgtttccgatcttttaccctacactttgaagagggcaggtaaatt 29138761  T

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Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 15041690 - 15041560
Alignment:
Q  18 tactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatc 117  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15041690 tactcattcatgtaatctttttcaatacaattcaatatgaattctaagggttttccctatgtttcttcctatcaatcatacttctcctatgaagctaatc 15041591  T
Q  118 tacatctattcgatcctattatttctgatat 148  Q
    |  |||| || ||||||||||||||||||||    
T  15041590 tcaatctctttgatcctattatttctgatat 15041560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 15112734 - 15112864
Alignment:
Q  18 tactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatc 117  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15112734 tactcattcatgtaatctttttcaatacaattcaatatgaattctaagggttttccctatgtttcttcctatcaatcatacttctcctatgaagctaatc 15112833  T
Q  118 tacatctattcgatcctattatttctgatat 148  Q
    |  |||| || ||||||||||||||||||||    
T  15112834 tcaatctctttgatcctattatttctgatat 15112864  T

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Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 15039961 - 15039832
Alignment:
Q  18 tactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatc 117  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  15039961 tactcattcatgtaatctttttcaatacaattcactatgaattctaagggttttccctatatttcttcctatcaatcatacttctcctatgaagctaatc 15039862  T
Q  118 tacatctattcgatcctattatttctgata 147  Q
    |  |||| || |||||||||||||||||||    
T  15039861 tcaatctctttgatcctattatttctgata 15039832  T

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Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 15114463 - 15114592
Alignment:
Q  18 tactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatc 117  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  15114463 tactcattcatgtaatctttttcaatacaattcactatgaattctaagggttttccctatatttcttcctatcaatcatacttctcctatgaagctaatc 15114562  T
Q  118 tacatctattcgatcctattatttctgata 147  Q
    |  |||| || |||||||||||||||||||    
T  15114563 tcaatctctttgatcctattatttctgata 15114592  T

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Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 16003564 - 16003695
Alignment:
Q  15 atatactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagcta 114  Q
    ||||||||||||||  ||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||| | |||||||| ||    
T  16003564 atatactcattcatc-aatctttttaaatacaatttataatgaattctaagagtttttcctatgtttcttcctatcaattatacttttcctatgaagtta 16003662  T
Q  115 atctacatctattcgatcctattatttctgata 147  Q
    ||||  |||| || |||||||||||||||||||    
T  16003663 atctcaatctctttgatcctattatttctgata 16003695  T

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Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 20186174 - 20186302
Alignment:
Q  18 tactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatc 117  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  20186174 tactcattcat-taatctttttcaatacaattcaatatgaattctaagggttttccctatgtttcttcctatcaatcatacttctcctatgaggctaatc 20186272  T
Q  118 tacatctattcgatcctattatttctgata 147  Q
    |  |||| ||||||||||||||||||||||    
T  20186273 tcaatcttttcgatcctattatttctgata 20186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 10866334 - 10866464
Alignment:
Q  18 tactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatc 117  Q
    ||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| |||||    
T  10866334 tactcattcatgtaatctttttcaatacaatttaatatgaattctaagggttttccctatgtttcttcatatcaatcatacttcttttatgaagttaatc 10866433  T
Q  118 tacatctattcgatcctattatttctgatat 148  Q
    |  |||| || ||||||||||||||||||||    
T  10866434 tcaatctctttgatcctattatttctgatat 10866464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 10868051 - 10868181
Alignment:
Q  18 tactcattcatataatctttttcaatacaattcataatgaattctaagggtttt-ccctatgtttcttcctatcaatcatacttctgctatgaagctaat 116  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||  | ||||| ||||    
T  10868051 tactcattcatataatctttttcaatacaattcaatatgaattctaagggtttttccctatgtttcttcctatcaatcatacttctcttctgaagttaat 10868150  T
Q  117 ctacatctattcgatcctattatttctgata 147  Q
    ||  |||| || |||||||||||||||||||    
T  10868151 ctcaatctctttgatcctattatttctgata 10868181  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 33566809 - 33566689
Alignment:
Q  30 taatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcg 129  Q
    |||||||||||||| |||||||  ||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| || |    
T  33566809 taatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctctttg 33566710  T
Q  130 atcctattatttctgatatat 150  Q
    ||||| |||||||||||||||    
T  33566709 atccttttatttctgatatat 33566689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 25598205 - 25598148
Alignment:
Q  54 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaag 111  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  25598205 atgaattctaatggttttccctatgtttctacctatcaatcatacttctcctatgaag 25598148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 8584492 - 8584591
Alignment:
Q  49 tcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||  ||||||||||| ||||||||||||||||    
T  8584492 tcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttatcttatgaagctaatctcaatctattcgatactattatttctgatat 8584591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 19844773 - 19844661
Alignment:
Q  31 aatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcga 130  Q
    |||||||||||||||||||||  ||  |||||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||    
T  19844773 aatctttttcaatacaattcaatattcattctaagggttttcagtatgtttcttcctatcactcatacttctgctatgaaactaatctcaatctattcga 19844674  T
Q  131 tcctattatttct 143  Q
    |||||||||||||    
T  19844673 tcctattatttct 19844661  T

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Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 22692478 - 22692592
Alignment:
Q  31 aatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcga 130  Q
    |||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||||||||  ||||||||||    
T  22692478 aatctttttcaatacaattcaatatgaattctaagggttttcactgtgtttcttcctatcaatcatacttctcctataaagctaatctcaatctattcga 22692577  T
Q  131 tcctattatttctgata 147  Q
    ||  |||||||||||||    
T  22692578 tc--attatttctgata 22692592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 30187808 - 30187685
Alignment:
Q  18 tactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatc 117  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||    |||||||||||||||||||||||||  || ||||||||||    
T  30187808 tactcattcatgtaatttttttcaatacaattcataatgaattttaagggttttcc----gtttcttcctatcaatcatacttctcttacgaagctaatc 30187713  T
Q  118 tacatctattcgatcctattatttctga 145  Q
    |  | ||| |||||||||||||||||||    
T  30187712 tcaacctaatcgatcctattatttctga 30187685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 53 - 129
Alignment:
Q  64 agggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatt 140  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53 agggttttccctatgtttcttactatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 3922 - 3846
Alignment:
Q  64 agggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatt 140  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3922 agggttttccctatgtttcttactatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 3846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 17309833 - 17309720
Alignment:
Q  30 taatctttttcaatacaattcataatgaattctaagggtttt--ccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctatt 127  Q
    ||||||||||||||||||||||  ||||||||||||||||||  | |||||||||||| ||| |||||||||||| ||||||||||||||| ||| | ||    
T  17309833 taatctttttcaatacaattcaatatgaattctaagggttttttctctatgtttcttcttatgaatcatacttctcctatgaagctaatcttcatttctt 17309734  T
Q  128 cgatcctattattt 141  Q
    ||||||||||||||    
T  17309733 cgatcctattattt 17309720  T

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