View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_29 (Length: 225)
Name: NF20159_low_29
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 39838489 - 39838698
Alignment:
| Q |
1 |
accaaaaacatataacattcaggactatgatttgacagtgtagacatcaaacttcaatgtcaattgacacttaactcatttgatccaaacnnnnnnnntc |
100 |
Q |
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| T |
39838489 |
accaaaaacatataacattcaggactatgatttgacagtgtacacatcaaacttcaatgtcaattgacacttaactcatttgatccaaacaaaaaaaatc |
39838588 |
T |
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| Q |
101 |
aaagatgataagaagtttattaaactatacactttaataacagaaccaatttaacaattaaataattattgaaagagcaataactcccgcaccctatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39838589 |
aaagatgataagaagtttattaaactatacactttaataacagaaccaatttaacaattaaataattattgaaagagcaataactcccgcaccctatcac |
39838688 |
T |
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| Q |
201 |
atgcaattct |
210 |
Q |
| |
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|||||||||| |
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| T |
39838689 |
atgcaattct |
39838698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 31289626 - 31289678
Alignment:
| Q |
158 |
ttaaataattattgaaagagcaataactcccgcaccctatcacatgcaattct |
210 |
Q |
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||||||||||| ||||| ||||||||||||| ||||| ||||| ||||||||| |
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| T |
31289626 |
ttaaataattaatgaaaaagcaataactcccccaccccatcacttgcaattct |
31289678 |
T |
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