View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_4 (Length: 556)
Name: NF20159_low_4
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 121 - 540
Target Start/End: Original strand, 40445802 - 40446221
Alignment:
| Q |
121 |
ctttctactcttttacaaaaaattaatactccctcaaagcttaaatataagcnnnnnnnntcaagtttggtaaaatcaaatataagcaaaattcaaatac |
220 |
Q |
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| T |
40445802 |
ctttctactcttttataaaaaattaatactccctcaaagcttaaatataagcaaaaaaaatcaagtttggtaaaatcaaatataagcaaaattcaaatac |
40445901 |
T |
|
| Q |
221 |
tcaatgttcagtggagttcaaggattcttcagacacaggtggagatcagaatactcaatggaggattttggattgagactgcaataagtaaaaacctctg |
320 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40445902 |
tcaatgttcagtggagttcaaggtttcttcagacacaggtggagatcagaatactcaatggaggattttggattaagactgcaataagtaaaaacctctg |
40446001 |
T |
|
| Q |
321 |
tatgtattaataaattgagcaacnnnnnnntctgatgttttacgggcatagtagtacccaaattatgctcgtacataaatctaccatattctaactttcc |
420 |
Q |
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| T |
40446002 |
tatgtattaataaattgagcaacaaaaaaatctgatggtttacaggcatagtagtacccaaattatgctcgtacataaatctaccatattctaactttcc |
40446101 |
T |
|
| Q |
421 |
caacagaaatataaaaaagaacaggataacacaaaaggctaatcgatgtgcagcaacagttaatacttaatacacactattgaacctagattatatagag |
520 |
Q |
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| T |
40446102 |
caacagaaatataaaaaagaacaggataacacaaaaggctaatcgatgtgcagcaacagttaatacttaatacacactattgaacctagattatatagaa |
40446201 |
T |
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| Q |
521 |
gtaatattcatcttatttgt |
540 |
Q |
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| T |
40446202 |
gtaatattcatcttatttgt |
40446221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40445682 - 40445714
Alignment:
| Q |
1 |
tgcttgtttttcattatctaccatctgcaatag |
33 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
40445682 |
tgcttgtttttcatcatctaccatctgcaatag |
40445714 |
T |
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