View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_low_6 (Length: 506)
Name: NF20159_low_6
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 3232850 - 3233341
Alignment:
| Q |
1 |
caccattatatatggtcttagtgagcattatgatgagcattcaaaaacaattaaaaagtgcaatttgagcaagaattcatattataggagcaactattgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3232850 |
caccattatatatggtcttagtgagcattatgatgagcattcaaaaacaattaaaaagtgcaatttgagcaagaattcatattataggaacaactattgt |
3232949 |
T |
|
| Q |
101 |
tataactcacttggattggtatgtgatactgacttaagatttgagagtatactcattttaaaggtctgagattcgattttctcctccagtgacaatttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| | |
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| T |
3232950 |
tataactcacttggattggtatgtgatactgacttaagatttgagagtatattcattttaaaggtttgagattcgattttctcctccggtgacaatttga |
3233049 |
T |
|
| Q |
201 |
atgagctaatctagcttattnnnnnnnncaatttaattaatgtgagggccggaagtcttggttcaaatagcaacaattaaacaatgccattcaaatattt |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3233050 |
atgagctaatctagcttattaaaaaaaacaatttaattaatgtgagggccggaagtcttggttcaaatagcaacaattaaacaatgccattcaaatattt |
3233149 |
T |
|
| Q |
301 |
taatagtccaatttttagcaagtcacatcacatggttggaaagaaaaactcagcaagtttgattttgaatttttgcattaactagcatccctcaattgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3233150 |
taatagtccaatttttagcaagtcacatcacatggttggaaagaaaaactcagcaagtttgattttgaatttttgcattaactagcatccctcaattgta |
3233249 |
T |
|
| Q |
401 |
gtcatgcaatccctcatcttagctcttaattagtaccatcttgtaattattccctaataattttgggattgatactgcatcaatgatgcaat |
492 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3233250 |
gtcatgcaatccctcatcttggctcttaattagtaccatcttgtaattattccttaataattttgggattgatactgcatcaatgatgcaat |
3233341 |
T |
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