View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2015_high_19 (Length: 209)
Name: NF2015_high_19
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2015_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 33323028 - 33323206
Alignment:
| Q |
15 |
aatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcagtaatcggtgagaaagtggctgagaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323028 |
aatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcagtaatcggtgagaaagtggctgagaga |
33323127 |
T |
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| Q |
115 |
ctatttaagaaaagtggaagctagaaatgaacttgttttaggagtcttcacaatgtgtaagttggaacaggaggatact |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33323128 |
ctatttaagaaaagtggaagctagaaatgaacttgttttagcagtcttcacaatgtgtaagttggaacaggaggatact |
33323206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 1041437 - 1041615
Alignment:
| Q |
15 |
aatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcagtaatcggtgagaaagtggctgagaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1041437 |
aatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcagtaatcggtgagaaagtggctgagaga |
1041536 |
T |
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| Q |
115 |
ctatttaagaaaagtggaagctagaaatgaacttgttttaggagtcttcacaatgtgtaagttggaacaggaggatact |
193 |
Q |
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| T |
1041537 |
ctatttaagaaaagtggaagctagaaatgaacttgttttagcagtcttcacaatgtgtaagttggaacaggaggatact |
1041615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 41199749 - 41199927
Alignment:
| Q |
15 |
aatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcagtaatcggtgagaaagtggctgagaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41199749 |
aatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcagtaatcggtgagaaaatggctgagaga |
41199848 |
T |
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| Q |
115 |
ctatttaagaaaagtggaagctagaaatgaacttgttttaggagtcttcacaatgtgtaagttggaacaggaggatact |
193 |
Q |
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| T |
41199849 |
ctatttaagaaaagtggaagctagaaatgaacttgttttaggagtcttcacaatgtgtaagttggaacaggaggatact |
41199927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 41192633 - 41192680
Alignment:
| Q |
146 |
cttgttttaggagtcttcacaatgtgtaagttggaacaggaggatact |
193 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41192633 |
cttgttttagcagtcttcacaatgtgtaagttggaacaggaggatact |
41192680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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