View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2015_high_5 (Length: 490)
Name: NF2015_high_5
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2015_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 35082877 - 35082415
Alignment:
| Q |
18 |
tcatgcaatcctgccaatgtgcacgggacgttgattataagctaataagcctacaaccagttgacatgttcccactcacacctcatactgagtgtgtttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35082877 |
tcatgcaatcctgccaatgtgcacgggacgttgattataagctaataagcctacaaccagttgacatgttcccactcacacctcatactgagtgtgtttg |
35082778 |
T |
|
| Q |
118 |
ccttctggagctttgtttatttgtgatcattaaaacttttccattttaaggttgggcacgatttcattttcactgctacatctgaggctactttgcagtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35082777 |
ccttctggagctttgtttatttgtgatcattaaaacctttccattttaaggttgggcacgatttcattttcactgctacatctgaggctactttgcagtt |
35082678 |
T |
|
| Q |
218 |
tggaccttgaatgtctgatgaattttgagccaatagtatcaattcatttggattatatttgggaaaagatcaatcaattataatattacttctacttgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35082677 |
tggaccttgaatgtctgatgaattttgagccaatagtatcaattcatttggattatatttgggaaaagatcaatcaattatcatattacttctacttgat |
35082578 |
T |
|
| Q |
318 |
atatatcttgtctaatatggctgccatatgcaattacagttttaatgaaatgtgaagttcaatacttagtggataaatgcactctggatttatgctcttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35082577 |
atatatcttgtctaatatggctgccatatgcaattacagttttaatgaaatgtgaagttcaatacttagtggataaatgcactctggatttatgctcttc |
35082478 |
T |
|
| Q |
418 |
aataggattaacctatgaattgcacctaagtgcatcaattaaataaattttacaatgcctttg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35082477 |
aataggattaacctatgaattgcacctaagtgcatcaattaaataaattttacaatgcctttg |
35082415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 52 - 244
Target Start/End: Complemental strand, 43195280 - 43195088
Alignment:
| Q |
52 |
ttataagctaataagcctacaaccagttgacatgttcccactcacacctcatactgagtgtgtttgccttctggagctttgtttatttgtgatcattaaa |
151 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| || |||||||||| || |
|
|
| T |
43195280 |
ttataagctaataagcctacagccagttgacatgttcccacacacacctcatatcgagtgtgtttgccttttggagctttgttgatctgtgatcatttaa |
43195181 |
T |
|
| Q |
152 |
acttttccattttaaggttgggcacgatttcattttcactgctacatctgaggctactttgcagtttggaccttgaatgtctgatgaattttg |
244 |
Q |
| |
|
|| || ||||| |||||||||||| || |||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43195180 |
accttcacatttcaaggttgggcaccatctcatttcttttgctacatctgggattactttgcagtttggaccttggatgtctgatgaattttg |
43195088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 43194973 - 43194920
Alignment:
| Q |
366 |
aatgtgaagttcaatacttagtggataaatgcactctggatttatgctcttcaa |
419 |
Q |
| |
|
|||||||||| ||||||| | ||||||| |||||||||||||||| || ||||| |
|
|
| T |
43194973 |
aatgtgaagtgcaatactcaatggataattgcactctggatttattcttttcaa |
43194920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 43195075 - 43195022
Alignment:
| Q |
263 |
atttggattatatttgggaaaagatcaatcaattataatattacttctacttga |
316 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| ||| | |||||||||| |
|
|
| T |
43195075 |
atttagattatatttgggaaaagaccaatcaattatcatagcatttctacttga |
43195022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University