View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2015_low_11 (Length: 353)
Name: NF2015_low_11
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2015_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 42228747 - 42228418
Alignment:
| Q |
7 |
tcgaataatatcaaatatgtcaaactcttaaaaggattaattttgtttttcatgtgtaatgtttagttaaattgttattcacannnnnnnngggtacaat |
106 |
Q |
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| T |
42228747 |
tcgaaaaaaatcaaatatgtcaaactcttaaaaggattaattttgtttttcatgtgtaatgtttagttaaattgttattcacatttttttttcgtacaat |
42228648 |
T |
|
| Q |
107 |
tgttattcacatttaattattagttattcaaatgaataaaa-taaagattgattatcgattagtaccttaattttcttcatcacaaagtattccagatca |
205 |
Q |
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||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42228647 |
tgttattcacatttaattaagagttattcaaatgaaaaaaaataaagattgattatcgattagtaccttaattttcttcatcacaaagtattccagatca |
42228548 |
T |
|
| Q |
206 |
atttaaattccattgtagtatatatcgtcnnnnnnnattgcacccattactcacattaaatgttgtatatataatactcttattaatgtggtcatggttt |
305 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42228547 |
atttaaattccattgtagtatatatcatctttttttattgcacccattactcacattaaatgttg--tatataatactcttattaatgtggtcatggttt |
42228450 |
T |
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| Q |
306 |
tggcatgtcgacattgttacagaatgggatat |
337 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42228449 |
tggcatgtcgacattgttacagaatgggatat |
42228418 |
T |
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