View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2015_low_16 (Length: 250)

Name: NF2015_low_16
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2015_low_16
NF2015_low_16
[»] chr3 (37 HSPs)
chr3 (22-250)||(8369891-8370119)
chr3 (128-250)||(30709304-30709425)
chr3 (128-250)||(35925947-35926069)
chr3 (128-250)||(21711658-21711780)
chr3 (128-250)||(39032063-39032185)
chr3 (128-250)||(27027163-27027285)
chr3 (128-250)||(40735051-40735172)
chr3 (128-250)||(27038498-27038620)
chr3 (128-250)||(36029550-36029671)
chr3 (128-250)||(40734120-40734241)
chr3 (128-250)||(47923411-47923532)
chr3 (168-250)||(16264805-16264887)
chr3 (128-250)||(8127087-8127209)
chr3 (128-250)||(48438672-48438794)
chr3 (128-232)||(40592290-40592394)
chr3 (143-232)||(1735828-1735916)
chr3 (128-232)||(40845128-40845233)
chr3 (151-229)||(29812708-29812787)
chr3 (169-230)||(6096261-6096322)
chr3 (167-227)||(46173178-46173238)
chr3 (151-230)||(51398471-51398551)
chr3 (167-230)||(4569395-4569458)
chr3 (175-250)||(33386230-33386305)
chr3 (184-230)||(36018323-36018369)
chr3 (152-250)||(54593133-54593230)
chr3 (128-208)||(24694694-24694775)
chr3 (175-250)||(27453413-27453488)
chr3 (175-250)||(27986031-27986106)
chr3 (191-229)||(7764137-7764175)
chr3 (168-230)||(49200112-49200174)
chr3 (184-229)||(44331248-44331293)
chr3 (168-229)||(44331891-44331952)
chr3 (175-239)||(1306447-1306511)
chr3 (175-239)||(23198373-23198437)
chr3 (175-239)||(23200572-23200636)
chr3 (151-230)||(31340703-31340783)
chr3 (190-230)||(43404394-43404434)
[»] chr2 (19 HSPs)
chr2 (128-250)||(23077990-23078112)
chr2 (128-250)||(33528143-33528264)
chr2 (128-250)||(10706771-10706893)
chr2 (130-250)||(13569787-13569906)
chr2 (128-250)||(17865634-17865756)
chr2 (129-250)||(39483333-39483454)
chr2 (128-250)||(20522679-20522800)
chr2 (128-250)||(21630402-21630523)
chr2 (128-250)||(8389669-8389788)
chr2 (191-250)||(34389307-34389366)
chr2 (158-232)||(33118609-33118684)
chr2 (127-232)||(14698527-14698632)
chr2 (145-230)||(39284536-39284622)
chr2 (178-231)||(2837286-2837339)
chr2 (152-229)||(17863839-17863916)
chr2 (174-239)||(25410109-25410174)
chr2 (175-239)||(30833014-30833078)
chr2 (175-250)||(28258743-28258818)
chr2 (191-230)||(29867565-29867604)
[»] chr6 (15 HSPs)
chr6 (128-250)||(5017014-5017135)
chr6 (128-250)||(31085991-31086112)
chr6 (133-250)||(31979974-31980090)
chr6 (183-250)||(18234540-18234607)
chr6 (187-250)||(5571842-5571904)
chr6 (127-232)||(24435488-24435595)
chr6 (151-230)||(21593094-21593173)
chr6 (175-239)||(22709488-22709552)
chr6 (183-230)||(3809367-3809414)
chr6 (175-250)||(5757044-5757119)
chr6 (182-229)||(9183454-9183501)
chr6 (178-229)||(22964175-22964226)
chr6 (178-229)||(23824167-23824218)
chr6 (178-225)||(26830696-26830743)
chr6 (190-230)||(603680-603720)
[»] chr4 (32 HSPs)
chr4 (128-250)||(3778005-3778127)
chr4 (128-250)||(16622812-16622933)
chr4 (128-239)||(16628391-16628501)
chr4 (128-250)||(36314749-36314870)
chr4 (128-250)||(36328958-36329079)
chr4 (128-250)||(38151956-38152077)
chr4 (158-250)||(5268747-5268840)
chr4 (128-250)||(10047821-10047944)
chr4 (128-250)||(54867636-54867757)
chr4 (128-232)||(25861551-25861656)
chr4 (133-250)||(5396214-5396331)
chr4 (192-250)||(8689079-8689137)
chr4 (151-230)||(54882467-54882547)
chr4 (151-230)||(26363693-26363772)
chr4 (191-250)||(5143717-5143776)
chr4 (128-250)||(5148134-5148256)
chr4 (151-230)||(9927904-9927983)
chr4 (151-232)||(27417610-27417692)
chr4 (175-239)||(13992722-13992786)
chr4 (191-231)||(40630452-40630492)
chr4 (128-250)||(6742934-6743055)
chr4 (178-230)||(37740299-37740351)
chr4 (128-230)||(6655360-6655463)
chr4 (190-232)||(41639032-41639074)
chr4 (191-229)||(52095805-52095843)
chr4 (193-230)||(34570857-34570894)
chr4 (192-229)||(39494682-39494719)
chr4 (186-230)||(2209183-2209227)
chr4 (178-230)||(26176067-26176119)
chr4 (175-239)||(28468070-28468134)
chr4 (175-239)||(31495745-31495809)
chr4 (191-231)||(50674506-50674546)
[»] chr5 (16 HSPs)
chr5 (128-250)||(11916490-11916612)
chr5 (128-250)||(14520686-14520808)
chr5 (128-250)||(12083696-12083818)
chr5 (152-229)||(212991-213068)
chr5 (128-229)||(42428862-42428964)
chr5 (128-216)||(13487827-13487916)
chr5 (170-250)||(31004713-31004793)
chr5 (153-229)||(37438793-37438869)
chr5 (175-239)||(38219873-38219937)
chr5 (167-230)||(42426678-42426742)
chr5 (175-250)||(9352900-9352975)
chr5 (177-239)||(24136327-24136389)
chr5 (178-228)||(28751027-28751077)
chr5 (183-228)||(16651067-16651112)
chr5 (175-239)||(16407734-16407798)
chr5 (175-239)||(18442076-18442140)
[»] chr1 (17 HSPs)
chr1 (128-250)||(3282163-3282285)
chr1 (128-250)||(37070224-37070346)
chr1 (128-250)||(29652271-29652393)
chr1 (128-250)||(13598857-13598979)
chr1 (192-250)||(26644483-26644541)
chr1 (178-230)||(28220670-28220722)
chr1 (178-230)||(28223865-28223917)
chr1 (195-250)||(16124245-16124300)
chr1 (178-231)||(37879551-37879604)
chr1 (175-239)||(19361005-19361069)
chr1 (175-239)||(19365861-19365925)
chr1 (214-250)||(21536175-21536211)
chr1 (178-229)||(31658911-31658962)
chr1 (128-230)||(37033730-37033833)
chr1 (68-120)||(22923612-22923664)
chr1 (178-250)||(49918022-49918093)
chr1 (175-239)||(51765083-51765147)
[»] chr7 (29 HSPs)
chr7 (128-250)||(79847-79967)
chr7 (128-232)||(33331968-33332073)
chr7 (158-250)||(49092148-49092240)
chr7 (132-250)||(2647220-2647337)
chr7 (128-250)||(21983699-21983821)
chr7 (152-230)||(14070277-14070355)
chr7 (152-230)||(14380305-14380383)
chr7 (128-208)||(46515848-46515928)
chr7 (167-231)||(2389736-2389800)
chr7 (151-230)||(47674386-47674466)
chr7 (128-232)||(4796187-4796292)
chr7 (151-230)||(47676579-47676659)
chr7 (175-239)||(25767389-25767453)
chr7 (128-250)||(21989364-21989485)
chr7 (151-229)||(4585807-4585885)
chr7 (178-230)||(4538994-4539046)
chr7 (175-239)||(48408491-48408555)
chr7 (175-250)||(2479792-2479867)
chr7 (191-230)||(23554725-23554764)
chr7 (152-231)||(32358496-32358575)
chr7 (191-230)||(43863947-43863986)
chr7 (175-250)||(47264099-47264174)
chr7 (170-216)||(35961457-35961503)
chr7 (178-230)||(6360573-6360625)
chr7 (175-239)||(18409242-18409306)
chr7 (175-239)||(21646486-21646550)
chr7 (128-208)||(34311285-34311365)
chr7 (175-239)||(39731026-39731090)
chr7 (178-230)||(48599939-48599991)
[»] chr8 (18 HSPs)
chr8 (128-250)||(4456465-4456587)
chr8 (128-250)||(5701997-5702120)
chr8 (158-250)||(19175280-19175373)
chr8 (152-231)||(22975963-22976042)
chr8 (145-230)||(15212425-15212511)
chr8 (167-231)||(11383450-11383514)
chr8 (168-230)||(4743637-4743699)
chr8 (191-231)||(40221232-40221272)
chr8 (183-230)||(4733503-4733550)
chr8 (168-230)||(30143005-30143067)
chr8 (168-230)||(42435652-42435714)
chr8 (168-230)||(43036086-43036148)
chr8 (132-208)||(23799141-23799217)
chr8 (191-231)||(12703081-12703121)
chr8 (178-230)||(27810971-27811023)
chr8 (177-239)||(1261509-1261571)
chr8 (175-239)||(2627411-2627475)
chr8 (151-222)||(33351816-33351888)
[»] scaffold0006 (2 HSPs)
scaffold0006 (130-250)||(2950-3070)
scaffold0006 (128-250)||(6142-6264)
[»] scaffold0036 (1 HSPs)
scaffold0036 (128-229)||(86066-86165)
[»] scaffold0087 (1 HSPs)
scaffold0087 (175-250)||(36398-36473)
[»] scaffold0066 (1 HSPs)
scaffold0066 (168-230)||(20858-20920)
[»] scaffold0286 (1 HSPs)
scaffold0286 (128-230)||(10962-11065)
[»] scaffold0176 (1 HSPs)
scaffold0176 (170-229)||(17708-17767)
[»] scaffold1519 (1 HSPs)
scaffold1519 (177-239)||(577-639)
[»] scaffold0098 (1 HSPs)
scaffold0098 (192-250)||(45655-45713)
[»] scaffold0466 (1 HSPs)
scaffold0466 (152-208)||(6777-6833)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 8369891 - 8370119
Alignment:
Q  22 cggcttagttcacatctcttctccgggagcttaataaaacttcaagaaatgctattctcacaacatgatttgttcactctctaccaaacttttgaaaata 121  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8369891 cggcttagttcacatctctcctccgggagcttaataaaacttcaagaaatgctattctcacaacatgatttgttcactctctaccaaacttttgaaaata 8369990  T
Q  122 cttccacgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgac 221  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  8369991 ctcccacgtgacacgatttcatcaacgtttcatgatttttcaggtagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgac 8370090  T
Q  222 acgattttcaaaattgctgggtacgtttt 250  Q
    ||||||||||||||||||||| |||||||    
T  8370091 acgattttcaaaattgctgggaacgtttt 8370119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 30709304 - 30709425
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||    
T  30709304 cgtgacacgatttcatcaacgtgtcacaatttt-caggtagtgagcatggtttgcagggtgttcaatcgtgtcacgattttgagaaaacgtgacacaatt 30709402  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||||||||||||||    
T  30709403 ttcaaacttgctgggtacgtttt 30709425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 35926069 - 35925947
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||||||||  |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  35926069 cgtgacacgatttcatcaacgtgtcacgatttcccaggcagtgagcatggtttgcagggtgctcaatcgtgtcacgagtttgagaaaacgtgacacgatt 35925970  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||| ||||||||||||    
T  35925969 ttcaaacttgttgggtacgtttt 35925947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 21711780 - 21711658
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||| ||||||| |||||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||    
T  21711780 cgtgacacgatttcttcaacgtgtcacgattttccaggcagtgagcatggttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacaatt 21711681  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| |||||| |||||||||    
T  21711680 ttcaaacttgctgagtacgtttt 21711658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 39032063 - 39032185
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| |||| || ||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||    
T  39032063 cgtgacacgatttcatcaacgtgtcacgatttt-caggcagggagcatggtttctcagggtgctcaatcgtgtcacgattttgggaaaatgtgacacgat 39032161  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||||||||||||    
T  39032162 tttcaaacttgctgggtacgtttt 39032185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 27027285 - 27027163
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    ||||||||||||||||||||||  ||||||||  |||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||    
T  27027285 cgtgacacgatttcatcaacgtaacacgatttcccaggcagtgagcatggtttgcagagtgctcaatcgtgtcacgattttgggaaaacgtgacacgatt 27027186  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||||| ||| ||||    
T  27027185 ttcaaacttgctggctacatttt 27027163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 40735051 - 40735172
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||||||||  || | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  40735051 cgtgacacgatttcatcaacgtgtcacgatttc-caagcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatt 40735149  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||||| ||| ||||    
T  40735150 ttcaaacttgctggctacatttt 40735172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 27038620 - 27038498
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    ||||||||||||||||||||||  ||||||||  |||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||    
T  27038620 cgtgacacgatttcatcaacgtgacacgatttcccaggcagtgagcatggtttgcagggtgctcaatcatgtcacgattttgggaaaatgtgacacgatt 27038521  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||| |||||| |||||    
T  27038520 ttcaaacttgttgggtatgtttt 27038498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 36029671 - 36029550
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    ||||||||||||| |||||||| |||||||||| |||| || || ||||||||| |||||||| ||||||||||||||||||  ||||||||||||||||    
T  36029671 cgtgacacgattttatcaacgtgtcacgatttt-caggcagcgaacatggtttgcagggtgcttaatcgtgtcacgattttggaaaaacgtgacacgatt 36029573  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||||||||||||||    
T  36029572 ttcaaacttgctgggtacgtttt 36029550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 40734120 - 40734241
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||| | |||||||||  || | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  40734120 cgtgacacgatttcatcaacatgtcacgatttc-caagcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatt 40734218  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||| ||| ||| ||||    
T  40734219 ttcaaacttgttggctacatttt 40734241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 47923411 - 47923532
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||  ||||||||||||| ||||||| |  |||| ||||||||||||||| ||||||||||||||||||||  ||||| |||||||||||||||||    
T  47923411 cgtgacaaaatttcatcaacgtgtcacgatgtc-caggcagtgagcatggtttgcagggtgctcaatcgtgtcacatttttgggaaaacgtgacacgatt 47923509  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||||||||||||||    
T  47923510 ttcaaacttgctgggtacgtttt 47923532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 16264887 - 16264805
Alignment:
Q  168 gtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||    
T  16264887 gtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaactagctgggtacgtttt 16264805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 8127209 - 8127087
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||| |||||||||||||| ||||||||||| ||| |||||||||||  | | ||||||||||||||||||||||||||| ||||  ||||||||||    
T  8127209 cgtgacaagatttcatcaacgtatcacgattttttaggcagtgagcatgggctttcagggtgctcaatcgtgtcacgattttgggaaagtgtgacacgat 8127110  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    |||| || ||||| ||||||||||    
T  8127109 tttc-aacttgctaggtacgtttt 8127087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 48438794 - 48438672
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||  || | |  ||||||||||| | ||||||||||| ||||||||||||||| | ||||||||||||||    
T  48438794 cgtgacacgatttcatcaacgtgtcacgatttc-caagcaacgagcatggtttttcagggtgctcaaccgtgtcacgattttggggaaacgtgacacgat 48438696  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||| ||||||||||||    
T  48438695 tttcaaacttgatgggtacgtttt 48438672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 40592290 - 40592394
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||| |||||||||||||| |||| ||||  |||| |  ||||||||||| | |||| |||||||||||||||||||||| ||||||||||||||||    
T  40592290 cgtgacatgatttcatcaacgtgtcacaatttc-caggcaacgagcatggtttttcagggagctcaatcgtgtcacgattttgggaaaacgtgacacgat 40592388  T
Q  227 tttcaa 232  Q
    ||||||    
T  40592389 tttcaa 40592394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 1735828 - 1735916
Alignment:
Q  143 tcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaa 232  Q
    ||||||| |||||||||| |||| ||||||||||| || | |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  1735828 tcaacgtgtcacgatttt-caggcagtgagcatggcttttcagggtgctcaatcgtg-cacgattttgggaaaacgtgacacgattttcaa 1735916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 40845233 - 40845128
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||||||||| |||||| | ||| ||||||  ||| |||||||||| ||| | ||||||||||||| |||   ||||||| ||||||||||||||||    
T  40845233 cgtgacacgattttatcaacatgtcatgattttctaggcagtgagcatgatttttcagggtgctcaatcatgttgagattttgggaaaacgtgacacgat 40845134  T
Q  227 tttcaa 232  Q
    ||||||    
T  40845133 tttcaa 40845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 29812708 - 29812787
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    ||||||||||  ||| |||||||||||||| | ||||||  |||||||| |||||||||| |||||||||||||||||||    
T  29812708 tcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 29812787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 6096322 - 6096261
Alignment:
Q  169 tgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||||||| ||||||  |||| ||| |||||||||| ||||||||||||||||||||    
T  6096322 tgagcatggtttgcagggtgtccaattgtgacacgattttgggaaaacgtgacacgattttc 6096261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 46173178 - 46173238
Alignment:
Q  167 agtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    ||||||||||||||| ||||||  |||||||| |||||||||| |||||| ||||||||||    
T  46173178 agtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacatgacacgatt 46173238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 51398471 - 51398551
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||||  |||||||||||||||||| | ||||||  |||| ||| |||||||||| ||||||||||||| ||||||    
T  51398471 tcacgattttctaggtagtgagcatggttttgcagggtgtccaattgtgacacgattttgggaaaacgtgacacaattttc 51398551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 4569395 - 4569458
Alignment:
Q  167 agtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| ||||||||| |||||||  |||||||| || ||||||| ||||||||||||||||||||    
T  4569395 agtgcgcatggtttttagggtgtccaatcgtgacatgattttgggaaaacgtgacacgattttc 4569458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 33386230 - 33386305
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| |||||||  ||||||| |||||||||| | || |||||||||||||||||| ||||||| || |||||    
T  33386230 tggtttgcagggtgccaaatcgtgacacgattttgtggaatcgtgacacgattttcaaacttgctggttaagtttt 33386305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 36018323 - 36018369
Alignment:
Q  184 gggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  36018323 gggtgctcaatcgtgacacgattttgggaaaacgtgacacaattttc 36018369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 54593133 - 54593230
Alignment:
Q  152 cacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||||  ||| ||||||||||||||  | |||  ||||||||| | | |||||| |||||||||||||||||||| || |||||||| |||||||    
T  54593133 cacgattttctaggcagtgagcatggttttcatggtattcaatcgtgactcaattttgggaaaacgtgacacgattttc-aacttgctgggcacgtttt 54593230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 24694694 - 24694775
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttc-aggtagtgagcatggtttgtagggtgctcaatcgtgtcacgatttt 208  Q
    ||||| |||||||||||||||| |||||||||| | | || ||||||||| |||| ||||||  ||||||| ||||||||||    
T  24694694 cgtgatacgatttcatcaacgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatcgtatcacgatttt 24694775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 27453488 - 27453413
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||||||||||  ||||||| || |||| || | || |||||||||||||||||| ||||||| || |||||    
T  27453488 tggtttgtagggtgccaaatcgtgacatgattgtgtggaatcgtgacacgattttcaaacttgctggttaagtttt 27453413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 27986031 - 27986106
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| |||||||  ||||||| ||||||| || | || |||||||||||||||||| ||||||| || |||||    
T  27986031 tggtttgcagggtgccaaatcgtgacacgattgtgtggaatcgtgacacgattttcaaacttgctggttaagtttt 27986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 7764137 - 7764175
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  7764137 caatcgtgacacgattttgggaaaacgtgacacgatttt 7764175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 49200174 - 49200112
Alignment:
Q  168 gtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||| |||| ||||||  |||||||| |||||| ||| | ||||||||||||||||||    
T  49200174 gtgagcatgttttgcagggtgtccaatcgtgacacgatgttggggaaacgtgacacgattttc 49200112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 44331248 - 44331293
Alignment:
Q  184 gggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    ||||| ||||||||| |||||||||| ||||| |||||||||||||    
T  44331248 gggtgttcaatcgtgacacgattttgggaaaaagtgacacgatttt 44331293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 44331952 - 44331891
Alignment:
Q  168 gtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    ||||| ||| |||| ||||||  |||||||| ||||||||||  ||||||||||||||||||    
T  44331952 gtgagtatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgtgacacgatttt 44331891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 1306511 - 1306447
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| ||| |||| |||||||||||| ||||| |||||    
T  1306511 tggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattctcaaacttgct 1306447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 23198437 - 23198373
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||||| ||| || ||||||||||||| |||| |||||    
T  23198437 tggtttgcagggtgccaaatcgtgacacgatttggaggaatcgtgacacgatttgcaaacttgct 23198373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 23200636 - 23200572
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||||| ||| || ||||||||||||| |||| |||||    
T  23200636 tggtttgcagggtgccaaatcgtgacacgatttggaggaatcgtgacacgatttgcaaacttgct 23200572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 31340783 - 31340703
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgag-aaaacgtgacacgattttc 230  Q
    ||||||||||  ||| ||||||||||||||  ||||||  |||||||| || ||||||| | ||||| |||||||||||||    
T  31340783 tcacgattttctaggcagtgagcatggttttcagggtgtccaatcgtgacatgattttgggaaaaacatgacacgattttc 31340703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 43404434 - 43404394
Alignment:
Q  190 tcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||| |||||||||| | ||||||||||||||||||    
T  43404434 tcaatcgtgacacgattttggggaaacgtgacacgattttc 43404394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 23077990 - 23078112
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||||||||  |||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  23077990 cgtgacacgatttcatcaacgtgtcacgatttcccaggcagtgagcatggattgtagggtgctcaattgtgtcacgattttgggaaaacgtgacacgatt 23078089  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||| ||||||||||||    
T  23078090 ttcaaacttgttgggtacgtttt 23078112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 33528143 - 33528264
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||| ||||||||||||| ||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  33528143 cgtgacacaatttcatcaacgtatcatgatttt-caggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatt 33528241  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||||||||||||||    
T  33528242 ttcaaacttgctgggtacgtttt 33528264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 10706771 - 10706893
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| |||| || ||||||||||| | |||||||||||| |||||||||||||| ||||||||||||||||    
T  10706771 cgtgacacgatttcatcaacgtgtcacgatttt-caggcagggagcatggtttctcagggtgctcaattgtgtcacgattttgggaaaacgtgacacgat 10706869  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||| ||||||||    
T  10706870 tttcaaacttgctggatacgtttt 10706893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 13569906 - 13569787
Alignment:
Q  130 tgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    ||||| |||||||||||||| |||||||||  |||| ||||||||||||||| |||||||||||||||||||  ||||||  ||||||||||||||||||    
T  13569906 tgacatgatttcatcaacgtatcacgatttc-caggcagtgagcatggtttgcagggtgctcaatcgtgtcataattttggaaaaacgtgacacgatttt 13569808  T
Q  230 caaaattgctgggtacgtttt 250  Q
    |||| ||||||||||||||||    
T  13569807 caaatttgctgggtacgtttt 13569787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 17865756 - 17865634
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||| |||||||||| ||| |||||||||| |||| |||||||||||||| | ||||||||||||| ||||||||||||| ||||| ||||||||||    
T  17865756 cgtgacatgatttcatcatcgtgtcacgatttt-caggcagtgagcatggttttttagggtgctcaatcatgtcacgattttgggaaaatgtgacacgat 17865658  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||||||||||||    
T  17865657 tttcaaacttgctgggtacgtttt 17865634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 39483454 - 39483333
Alignment:
Q  129 gtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    ||||||||||||||||||||| |||||||||  || | || ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  39483454 gtgacacgatttcatcaacgtctcacgatttc-caagcagcgagcatggtttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatt 39483356  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||| ||||||||||||    
T  39483355 ttcaaacttgttgggtacgtttt 39483333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 20522800 - 20522679
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||  ||||||||||||| |||||||||  |||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  20522800 cgtgacataatttcatcaacgtgtcacgatttc-caggcaatgagcatggtttttcagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 20522702  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    |||| || |||||||| |||||||    
T  20522701 tttc-aacttgctgggcacgtttt 20522679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 21630523 - 21630402
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||  |||| |||||||||||||| | |||||||||||||||||||| |||||| |||||| |||||||||    
T  21630523 cgtgacacgatttcatcaacgtgtcacgatttc-caggcagtgagcatggttttttagggtgctcaatcgtgtcacaattttgggaaaacatgacacgat 21630425  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    |||| || |||||||| |||||||    
T  21630424 tttc-aacttgctgggcacgtttt 21630402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 8389669 - 8389788
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| ||| |||||  |||| |||||| ||| |||| |||||| ||  |||||||||||||||| |||||||||||||||||    
T  8389669 cgtgacacgatttcatcaacgtgtcaagatttc-caggcagtgagtatgatttgcagggtgttc--tcgtgtcacgattttgggaaaacgtgacacgatt 8389765  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| |||||| |||||||||    
T  8389766 ttcaaacttgctgagtacgtttt 8389788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 34389366 - 34389307
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  34389366 caatcgtgacacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgtttt 34389307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 33118684 - 33118609
Alignment:
Q  158 ttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaa 232  Q
    |||||||| || ||||||||||| | ||||||||||||||||||||| ||||  ||||||||||||| ||||||||    
T  33118684 ttttcaggcagcgagcatggtttttcagggtgctcaatcgtgtcacgtttttaggaaaacgtgacacaattttcaa 33118609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 14698527 - 14698632
Alignment:
Q  127 acgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||||||||||| ||| |||  ||| |||||  ||| |||||||||| |||   || || ||| |||| ||||||||||| ||||||||||||||||    
T  14698527 acgtgacacgatttcctcatcgtgacacaattttctaggcagtgagcatgattttctggatgttcattcgtatcacgattttgggaaaacgtgacacgat 14698626  T
Q  227 tttcaa 232  Q
    ||||||    
T  14698627 tttcaa 14698632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 39284536 - 39284622
Alignment:
Q  145 aacgtttcacgatttttcaggtagtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||| ||||||||||  ||| |||||||||||||| | ||||||  | |||||| |||||||||| ||||||||||||| ||||||    
T  39284536 aacgtgtcacgattttctaggcagtgagcatggtttcgcagggtgtcctatcgtgacacgattttgggaaaacgtgacacaattttc 39284622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 2837339 - 2837286
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    |||| ||||||  |||||||| |||||||||| |||||||||||||||||||||    
T  2837339 tttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttca 2837286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 17863839 - 17863916
Alignment:
Q  152 cacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    |||||||||  ||| ||||||||||||||  ||||||  |||||||| ||  |||||| |||||||||||||||||||    
T  17863839 cacgattttcaaggcagtgagcatggttttcagggtgtccaatcgtgacataattttgggaaaacgtgacacgatttt 17863916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 25410174 - 25410109
Alignment:
Q  174 atggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    |||||||| |||||||  ||||||| |||||| ||| |||| |||||||||||||||||| |||||    
T  25410174 atggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttcaaacttgct 25410109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 30833014 - 30833078
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| ||| |||| |||||||||||||||||| |||||    
T  30833014 tggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttcaaacttgct 30833078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 28258743 - 28258818
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||   ||||||| ||| |||||| |||| |||||||||||||||||| ||||||| || |||||    
T  28258743 tggtttgcagggtgtcaaatcgtggcacaattttgtgaaatcgtgacacgattttcaaacttgctggttaagtttt 28258818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 29867565 - 29867604
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  29867565 caatcgtgacacgattttgggaaaacgtgacacgattttc 29867604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 5017014 - 5017135
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||||||||  || | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5017014 cgtgacacgatttcatcaacgtgtcacgatttc-caagcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 5017112  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| || |||||||| ||||    
T  5017113 ttcaaacttactgggtacatttt 5017135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 31085991 - 31086112
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||| ||| ||| |||||  |||| ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  31085991 cgtgacacgatttcatcagcgtgtcatgatttc-caggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacacgatt 31086089  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||| ||||||||||    
T  31086090 ttcaaacttgctaggtacgtttt 31086112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 31980090 - 31979974
Alignment:
Q  133 cacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||| | |||||| ||||||||||||||||||||  |||||||||||| ||||||     
T  31980090 cacgatttcatcaacgtgtcacgatttt-caggcagtgagcatggtttttcagggtgatcaatcgtgtcacgattttggaaaaacgtgacacaattttc- 31979993  T
Q  232 aaattgctgggtacgtttt 250  Q
    || |||||||| |||||||    
T  31979992 aacttgctgggcacgtttt 31979974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 18234607 - 18234540
Alignment:
Q  183 agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||||    
T  18234607 agggtgctcaatcgtgtcaggattttgggaaaacgtgatacgattttcaaacttgctgggtacgtttt 18234540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 5571842 - 5571904
Alignment:
Q  187 tgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||    
T  5571842 tgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc-aacttgctgggcacgtttt 5571904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 24435488 - 24435595
Alignment:
Q  127 acgtgacacgatttcatcaacgtttcacgatttttca--ggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacg 224  Q
    ||||||||||||||| ||||||| ||||||||||||   || ||| | |||| |||   ||||||| |||||||||| ||||||| ||||||||||||||    
T  24435488 acgtgacacgatttcctcaacgtgtcacgatttttccatggcagttaacatgtttttctgggtgctgaatcgtgtcatgattttgggaaaacgtgacacg 24435587  T
Q  225 attttcaa 232  Q
    ||||||||    
T  24435588 attttcaa 24435595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 21593094 - 21593173
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||||  ||||||||||||||||||  ||||||  |||||||| ||| |||||| ||||||||||||||||||||    
T  21593094 tcacgattttctaggtagtgagcatggttttcagggtgtccaatcgtgacacaattttgggaaaacgtgacacgattttc 21593173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 22709552 - 22709488
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| ||| |||| |||||||||||||||||| |||||    
T  22709552 tggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttcaaacttgct 22709488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 3809414 - 3809367
Alignment:
Q  183 agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||| |||||||| |||||||||| | ||||||||||||||||||    
T  3809414 agggtgcccaatcgtgacacgattttggggaaacgtgacacgattttc 3809367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 5757044 - 5757119
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||   |||||||  ||||||||| |||| |||||||||||||||||| ||||||| || |||||    
T  5757044 tggtttgcagggtgtcaaatcgtggtacgattttgtgaaatcgtgacacgattttcaaacttgctggttaagtttt 5757119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 9183501 - 9183454
Alignment:
Q  182 tagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    |||||||  |||||||| |||||||||| |||||||||||||||||||    
T  9183501 tagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 9183454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 22964226 - 22964175
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    |||| |||||| |||||||||  ||||||||| |||||||||||||||||||    
T  22964226 tttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttt 22964175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 23824167 - 23824218
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    |||| |||||| |||||||||  ||||||||| |||||||||||||||||||    
T  23824167 tttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttt 23824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 26830743 - 26830696
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacga 225  Q
    ||||||||||||||||||||| ||||||||||   |||||||||||||    
T  26830743 tttgtagggtgctcaatcgtgacacgattttggagaaacgtgacacga 26830696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 603720 - 603680
Alignment:
Q  190 tcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||| |||||||||| |||||||||||| |||||||    
T  603720 tcaatcgtgacacgattttgggaaaacgtgacatgattttc 603680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 3778127 - 3778005
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||| ||||||||| |||||||||| || | || |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  3778127 cgtgacacgattacatcaacgtgtcacgattttccaagcagcgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatt 3778028  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||| ||||||||||    
T  3778027 ttcaaatttgctcggtacgtttt 3778005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 16622812 - 16622933
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |  ||||||||| ||||||| |||||| |||||||||||||||||    
T  16622812 cgtgacacgatttcatcaacgtgtcacgatttt-caggtagtgagcatggtttgcattgtgctcaattgtgtcacaattttgggaaaacgtgacacgatt 16622910  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||| ||||||||||    
T  16622911 ttcaaacttgctaggtacgtttt 16622933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 16628391 - 16628501
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    ||||||||||||||||||| || |||||||||| |||| |||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  16628391 cgtgacacgatttcatcaatgtgtcacgatttt-caggcagtgagcatgctttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatt 16628489  T
Q  228 ttcaaaattgct 239  Q
    |||||| |||||    
T  16628490 ttcaaacttgct 16628501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 36314749 - 36314870
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| |||| || |||||| |||| | ||| ||||||||||||||||||||||| ||||||||||||||||    
T  36314749 cgtgacacgatttcatcaacgtgtcacgatttt-caggcagggagcatagtttctcaggatgctcaatcgtgtcacgattttgggaaaacgtgacacgat 36314847  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    |||| || |||||||| |||||||    
T  36314848 tttc-aacttgctgggcacgtttt 36314870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 36328958 - 36329079
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| |||| || |||||| |||| | ||| ||||||||||||||||||||||| ||||||||||||||||    
T  36328958 cgtgacacgatttcatcaacgtgtcacgatttt-caggcagggagcatagtttctcaggatgctcaatcgtgtcacgattttgggaaaacgtgacacgat 36329056  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    |||| || |||||||| |||||||    
T  36329057 tttc-aacttgctgggcacgtttt 36329079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 38151956 - 38152077
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||| ||||  |||| |||||| | |||||| |||||||||||||||||||| | |||| ||||||||||||| |||    
T  38151956 cgtgacacgatttcatcaacgtgtcacaatttc-caggcagtgagtacggtttgcagggtgctcaatcgtgtcacaaatttgggaaaacgtgacacaatt 38152054  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||||| ||||||||    
T  38152055 ttcaaacttgctggatacgtttt 38152077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 5268747 - 5268840
Alignment:
Q  158 ttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||| || ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  5268747 ttttcaggcagcgagcatggtttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgtttt 5268840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 10047944 - 10047821
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt--agggtgctcaatcgtgtcacgattttgagaaaacgtgacacga 225  Q
    |||||||||||||||||||||| || ||||||  |||| || ||||||||||| |  ||||||||||| ||||||||||||||| |||||||||||||||    
T  10047944 cgtgacacgatttcatcaacgtgtcgcgatttc-caggcagcgagcatggttttttcagggtgctcaaccgtgtcacgattttgggaaaacgtgacacga 10047846  T
Q  226 ttttcaaaattgctgggtacgtttt 250  Q
    ||| |||| ||| ||||||||||||    
T  10047845 tttgcaaacttgatgggtacgtttt 10047821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 54867757 - 54867636
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| | || || ||||||||||| | ||| |||||||||||||||| |||||| ||||||||||||||||    
T  54867757 cgtgacacgatttcatcaacgtgtcacgatttt-cgggcagcgagcatggtttttcaggatgctcaatcgtgtcacaattttgggaaaacgtgacacgat 54867659  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    |||| || |||||||| |||||||    
T  54867658 tttc-aacttgctgggcacgtttt 54867636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 25861551 - 25861656
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgag-aaaacgtgacacga 225  Q
    |||||||||||||||||||||| |||||||||  |||| ||||||||||| || | ||||||||||||||||||||||||||| | ||||||||||||||    
T  25861551 cgtgacacgatttcatcaacgtgtcacgatttc-caggcagtgagcatggcttttcagggtgctcaatcgtgtcacgattttgggaaaaacgtgacacga 25861649  T
Q  226 ttttcaa 232  Q
    |||||||    
T  25861650 ttttcaa 25861656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 5396214 - 5396331
Alignment:
Q  133 cacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    ||||||||||||||||| ||| |||||| || | || ||||||||||| | ||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  5396214 cacgatttcatcaacgtgtcatgatttt-caagcagggagcatggtttctcaggttgctcaatcgtgtcacgattttggaaaaacgtgacacgattttca 5396312  T
Q  232 aaattgctgggtacgtttt 250  Q
    || ||| |||||| |||||    
T  5396313 aacttgttgggtatgtttt 5396331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 8689079 - 8689137
Alignment:
Q  192 aatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  8689079 aatcgtgacacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgtttt 8689137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 54882467 - 54882547
Alignment:
Q  151 tcacgatttttca-ggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||||| | || ||||||||||||||| ||||||  |||||||| |||||||||| ||||||||||||||||||||    
T  54882467 tcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttc 54882547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 26363693 - 26363772
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||||| ||| ||||| ||| |||| |||||||  |||||||| |||||||||| ||||||||||||||||||||    
T  26363693 tcacgattttttaggcagtgaacattgtttttagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttc 26363772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 5143776 - 5143717
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||| |||||||||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  5143776 caatcgtggcacgattttgtgaaaatgtgacacgattttcaaacttgttgggtacgtttt 5143717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 5148256 - 5148134
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcag-gtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||||||||| |||| |||  ||||||||| ||  || |||||| | ||||| ||||||  |||||||| |||||||||| |||||| |||||||||    
T  5148256 cgtgacacgattttatcaccgtgacacgattttgcaatgtcgtgagc-tagtttgcagggtgaccaatcgtggcacgattttgtgaaaacttgacacgat 5148158  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| || |||| ||||||||    
T  5148157 tttcaaacttactggatacgtttt 5148134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 9927983 - 9927904
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||||  ||| ||||| |||| |||| |||||| ||||||||| |||||||||| ||||| ||||||||||||||    
T  9927983 tcacgattttctaggcagtgaacatgttttgcagggtgttcaatcgtgacacgattttgggaaaatgtgacacgattttc 9927904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 27417692 - 27417610
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggtttgtagg-gtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaa 232  Q
    |||||||||  ||||||||||||||||||  | |  ||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  27417692 tcacgatttggcaggtagtgagcatggttccttgatgtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcaa 27417610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 13992786 - 13992722
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||||||| |||| |||||||||||||||||| |||||    
T  13992786 tggtttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgattttcaaacttgct 13992722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 40630452 - 40630492
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  40630452 caatcgtgtcacgattttgggaaaacgtgacacgattttca 40630492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 6742934 - 6743055
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttc-aggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| | | || | |||| || |||  |||||||  ||||||| |||| ||||| ||||||||||||||||    
T  6742934 cgtgacacgatttcatcaacgtgtcacgattttgcaacgtcgagagc-tgtttttcagggtgcctaatcgtggcacgtttttgggaaaacgtgacacgat 6743032  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||| ||| ||| |||| |||||||    
T  6743033 ttt-aaacttgttgggcacgtttt 6743055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 37740299 - 37740351
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||||||| |||||||  |||||||||| |||||||||||| |||||||    
T  37740299 tttgtagggtgcccaatcgtaacacgattttgggaaaacgtgacatgattttc 37740351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 6655360 - 6655463
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcag-gtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||||||||||||   ||| |||||||||| ||  |  ||||||||| |||| ||||||  |||||||| |||||||||| | ||| ||||||||||    
T  6655360 cgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacacgat 6655459  T
Q  227 tttc 230  Q
    ||||    
T  6655460 tttc 6655463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 41639032 - 41639074
Alignment:
Q  190 tcaatcgtgtcacgattttgagaaaacgtgacacgattttcaa 232  Q
    ||||||||| ||||||||||  |||||||||||||||||||||    
T  41639032 tcaatcgtgacacgattttggaaaaacgtgacacgattttcaa 41639074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 52095843 - 52095805
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  52095843 caatcgtgacacgattttgggaaaacgtgacacgatttt 52095805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 34570894 - 34570857
Alignment:
Q  193 atcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  34570894 atcgtgacacgattttgggaaaacgtgacacgattttc 34570857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 39494682 - 39494719
Alignment:
Q  192 aatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  39494682 aatcgtgtcacgattttgtaaaaacgtgacacgatttt 39494719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 2209183 - 2209227
Alignment:
Q  186 gtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| |||||||| |||||||||| | ||||||||||||||||||    
T  2209183 gtgcccaatcgtgacacgattttggggaaacgtgacacgattttc 2209227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 26176119 - 26176067
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| ||||||| ||| |||| ||| |||||| ||||||||||||||||||||    
T  26176119 tttgcagggtgcccaaccgtgacacaattttgggaaaacgtgacacgattttc 26176067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 28468070 - 28468134
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| |||  ||| |||||||||||||||||| |||||    
T  28468070 tggtttgcagggtgccaaatcgtgacacgatcttggaaaatcgtgacacgattttcaaacttgct 28468134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 31495809 - 31495745
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| ||||||| || |||| ||||||||||||| |||| |||||    
T  31495809 tggtttgcagggtgccaaatcgtgacacgattgtgggaaatcgtgacacgatttgcaaacttgct 31495745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 50674546 - 50674506
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    ||||||||| ||||||||| |||||||||||| ||||||||    
T  50674546 caatcgtgttacgattttgggaaaacgtgacatgattttca 50674506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 11916490 - 11916612
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||| ||||||||||||| |||||||||| |||| ||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  11916490 cgtgacacaatttcatcaacgtgtcacgattttccaggcagtgagtgtggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatt 11916589  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||| |||||| |||||    
T  11916590 ttcaaacttgttgggtatgtttt 11916612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 14520808 - 14520686
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| |||| || ||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||    
T  14520808 cgtgacacgatttcatcaacgtgtcacgatttt-caggcagggagcatggtttctcagggtgctcaatcgtgtcatgattttgggaaaacgtgacacgat 14520710  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||| ||||||||||||    
T  14520709 tttcaaacttgttgggtacgtttt 14520686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 12083696 - 12083818
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||||||||  |||| ||||||||||||||  |||||||||||| |||||||  ||||| |||||||||||||||||    
T  12083696 cgtgacacgatttcatcaacgtgtcacgatttcccaggcagtgagcatggtttacagggtgctcaattgtgtcacagttttgggaaaacgtgacacgatt 12083795  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||| ||||||||||||    
T  12083796 ttcaaacttgttgggtacgtttt 12083818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 212991 - 213068
Alignment:
Q  152 cacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    |||||||||  ||||||||||||||||||| |||| |  |||||||| |||||||||| |||||||||||||||||||    
T  212991 cacgattttctaggtagtgagcatggtttgcagggcgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 213068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 42428964 - 42428862
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||  | | ||| ||||||||||  ||| |||||||||||||| | ||||||  |||||||| |||||||||| ||||||||||||||||    
T  42428964 cgtgacacgatttagtaagcgtgtcacgattttctaggaagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgat 42428865  T
Q  227 ttt 229  Q
    |||    
T  42428864 ttt 42428862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 13487827 - 13487916
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttc-aggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaac 216  Q
    |||||||||||||||||||||| |||||||||| |  || | |||||||  |||  |||||||||||||||| |||||||||| ||||||    
T  13487827 cgtgacacgatttcatcaacgtgtcacgattttccttggcaatgagcatatttttcagggtgctcaatcgtgacacgattttgggaaaac 13487916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 31004713 - 31004793
Alignment:
Q  170 gagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||||||| | || ||||||||||||||||||||| || |||||||||| ||||| ||| || |||||||| |||||||    
T  31004713 gagcatggtttttcagagtgctcaatcgtgtcacgattgtgggaaaacgtgatacgatattc-aacttgctgggcacgtttt 31004793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 37438793 - 37438869
Alignment:
Q  153 acgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    ||||||||  ||| ||||||||||||||  || |||  |||||||| || ||||||| |||||||||||||||||||    
T  37438793 acgattttcaaggcagtgagcatggttttcagagtgtccaatcgtgacatgattttgggaaaacgtgacacgatttt 37438869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 38219937 - 38219873
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    |||||||||||||||  ||||||| |||||| ||| ||||  ||||||||||||||||| |||||    
T  38219937 tggtttgtagggtgccaaatcgtgacacgatcttgggaaattgtgacacgattttcaaacttgct 38219873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 42426742 - 42426678
Alignment:
Q  167 agtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||||||||| | ||||||  |||||||| |||||||||| ||||||||||||| ||||||    
T  42426742 agtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacaattttc 42426678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 9352900 - 9352975
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||   ||||||| ||||||| || |||| |||||||||||||||||| ||||||| || |||||    
T  9352900 tggtttgcagggtgtcaaatcgtggcacgattctgtgaaatcgtgacacgattttcaaacttgctggttaagtttt 9352975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 24136389 - 24136327
Alignment:
Q  177 gtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||| |||||||  ||||||| |||||| ||| |||| |||||||||||||||||| |||||    
T  24136389 gtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttcaaacttgct 24136327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 28751077 - 28751027
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattt 228  Q
    |||| |||||| ||||||||| |||||||||| ||||||||||||| ||||    
T  28751077 tttgcagggtgttcaatcgtgacacgattttgggaaaacgtgacacaattt 28751027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 16651112 - 16651067
Alignment:
Q  183 agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattt 228  Q
    ||||| ||||||| || |||||||||| ||||||||||||||||||    
T  16651112 agggtactcaatcatgacacgattttgggaaaacgtgacacgattt 16651067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 16407734 - 16407798
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| ||||| || ||||||||||||| |||| |||||    
T  16407734 tggtttgcagggtgccaaatcgtgacacgatcttgaggaatcgtgacacgatttgcaaacttgct 16407798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 18442140 - 18442076
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| ||||||| || |||| ||||||||||||| |||| |||||    
T  18442140 tggtttgcagggtgccaaatcgtgacacgattgtgggaaatcgtgacacgatttgcaaacttgct 18442076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 3282285 - 3282163
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||| ||| |||| || ||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||    
T  3282285 cgtgacacgatttcatcaacgtgtcacgaattt-caggcagggagtatggtttttcaaggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 3282187  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||||||||||||    
T  3282186 tttcaaacttgctgggtacgtttt 3282163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 37070346 - 37070224
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| |||| || ||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||    
T  37070346 cgtgacacgatttcatcaacgtgtcacgatttt-caggcagggagcatggtttctcaaggtgctcaatcgtgtcacgattttgggaaaacgtgacacgat 37070248  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||| ||||||||||||    
T  37070247 tttcaaacttgttgggtacgtttt 37070224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 29652393 - 29652271
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgatttt-gagaaaacgtgacacgat 226  Q
    ||||| |||||||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||| | |||||    
T  29652393 cgtgatacgatttcatcaacgtgtcacgatttt-caggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaaacgttatacgat 29652295  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||| ||||||||||||    
T  29652294 tttcaaatttgttgggtacgtttt 29652271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 13598979 - 13598857
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| ||||||||| | ||| || ||||||||||| | | |||  |||||||||||| ||||||| ||||| ||||||||||    
T  13598979 cgtgacacgatttcatcaacgtgtcacgatttct-aggcagcgagcatggtttttcaaggtattcaatcgtgtcatgattttgggaaaatgtgacacgat 13598881  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||||||||||||    
T  13598880 tttcaaacttgctgggtacgtttt 13598857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 26644483 - 26644541
Alignment:
Q  192 aatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||| ||||    
T  26644483 aatcgtggcacgattttgtgaaaacgtgacacgattttcaaacttgttgggtacctttt 26644541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 28220722 - 28220670
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| ||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  28220722 tttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacgattttc 28220670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 28223917 - 28223865
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| ||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  28223917 tttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacgattttc 28223865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 16124245 - 16124300
Alignment:
Q  195 cgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||||||||||  ||||||||||||||||||||||| ||  ||||||||||||    
T  16124245 cgtgtcacgattttcggaaaacgtgacacgattttcaaactttttgggtacgtttt 16124300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 37879604 - 37879551
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    |||| |||||||||||||||| ||||||||||  |||| |||||||||||||||    
T  37879604 tttgcagggtgctcaatcgtgacacgattttggaaaaatgtgacacgattttca 37879551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 19361005 - 19361069
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| ||| |||| |||||||||||||||||| |||||    
T  19361005 tggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttcaaacttgct 19361069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 19365861 - 19365925
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| ||| |||| |||||||||||||||||| |||||    
T  19365861 tggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttcaaacttgct 19365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 21536175 - 21536211
Alignment:
Q  214 aacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||||||||||||||| ||||||||||||||||    
T  21536175 aacgtgacacgattttcaaacttgctgggtacgtttt 21536211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 31658911 - 31658962
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    |||| ||||||| |||||||| |||||||||| ||||||||||||| |||||    
T  31658911 tttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacaatttt 31658962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 37033833 - 37033730
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcag-gtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||||||||||||   ||| |||||||||| ||  || ||||||||| |||| ||||||  |||||||| |||||||||  | |||| |||||||||    
T  37033833 cgtgacacgatttcataggcgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatcgtgacacgattttcgggaaacatgacacgat 37033734  T
Q  227 tttc 230  Q
    ||||    
T  37033733 tttc 37033730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 22923664 - 22923612
Alignment:
Q  68 aaatgctattctcacaacatgatttgttcactctctaccaaacttttgaaaat 120  Q
    ||||||||||||| ||||| | |||||||| |||| |||||||||| ||||||    
T  22923664 aaatgctattctcccaacaagttttgttcattctcaaccaaactttcgaaaat 22923612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 49918022 - 49918093
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||| ||||||| |||||||| |||||||||   ||||||||||||||||||  || |||||||| |||||||    
T  49918022 tttgcagggtgcccaatcgtgacacgattttcgaaaaacgtgacacgatttt-taacttgctgggcacgtttt 49918093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 51765083 - 51765147
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| ||||| || ||||||||||||| |||| |||||    
T  51765083 tggtttgcagggtgccaaatcgtgacacgatcttgaggaatcgtgacacgatttgcaaacttgct 51765147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 79967 - 79847
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||| ||||| |||||||||  |||| ||||||||||||||| ||| |||||||||||||||||||||||  |||| |||||| ||||    
T  79967 cgtgacacgatttcattaacgtgtcacgatttc-caggcagtgagcatggtttgcagg-tgctcaatcgtgtcacgattttggaaaaatgtgacaagatt 79870  T
Q  228 ttcaaaattgctgggtacgtttt 250  Q
    |||||| ||||||||||||||||    
T  79869 ttcaaacttgctgggtacgtttt 79847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 33331968 - 33332073
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||| |||||||||||||| ||||||||||| ||| |||||||||||||| | |||||||||||| ||||||||||||||  |||||||||||||||    
T  33331968 cgtgacatgatttcatcaacgtgtcacgattttttaggcagtgagcatggttttttagggtgctcaattgtgtcacgattttggaaaaacgtgacacgat 33332067  T
Q  227 tttcaa 232  Q
    ||||||    
T  33332068 tttcaa 33332073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 49092240 - 49092148
Alignment:
Q  158 ttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||    
T  49092240 ttttcagacagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaatgtgacacgattttcgaacttgctgggtacgtttt 49092148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 2647220 - 2647337
Alignment:
Q  132 acacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||||||||||||| ||| |||||| |||| || ||||||||||| | |||||||| |||||||||||||||||| |||||||||||| |||||||    
T  2647220 acacgatttcatcaacgtgtcaggatttt-caggcagcgagcatggtttttgagggtgcttaatcgtgtcacgattttgggaaaacgtgacatgattttc 2647318  T
Q  231 aaaattgctgggtacgtttt 250  Q
     || |||||||| |||||||    
T  2647319 -aacttgctgggcacgtttt 2647337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 21983821 - 21983699
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcag-gtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||| |||  ||||||||| ||  || |||||| ||||||| ||||||  |||||| | || ||||||| ||||||||||||||||    
T  21983821 cgtgacacgatttcatcatcgtgacacgattttgcaatgtcgtgagc-tggtttgcagggtgaccaatcgcggcatgattttgtgaaaacgtgacacgat 21983723  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||| ||||||||||||    
T  21983722 tttcaaacttgttgggtacgtttt 21983699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 14070355 - 14070277
Alignment:
Q  152 cacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||||  ||| ||||||||||||||  |||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  14070355 cacgattttcaaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttc 14070277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 14380383 - 14380305
Alignment:
Q  152 cacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||||  ||| ||||||||||||||  |||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  14380383 cacgattttcaaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttc 14380305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 46515848 - 46515928
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgatttt 208  Q
    |||||||||||||||| ||||| |||||||||| |||| || ||||||||||| | ||||||||||||||||||||||||||    
T  46515848 cgtgacacgatttcattaacgtgtcacgatttt-caggcagcgagcatggtttttcagggtgctcaatcgtgtcacgatttt 46515928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 2389736 - 2389800
Alignment:
Q  167 agtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||| |||||||||||||||    
T  2389736 agtgagcatggtttttagggtgtccaatcgtgacacgattttgagaaaatgtgacacgattttca 2389800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 47674466 - 47674386
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||||| |||| |||||||||||||| | ||||||  |||||||| |||||||||| ||||||||||||||||||||    
T  47674466 tcacgattttccaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttc 47674386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 4796187 - 4796292
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttt--tcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacga 225  Q
    |||||||||||||||||||||| ||||||||||  | | || | |||  || |||| |||||||||||||||| ||||||||||  ||||||||||||||    
T  4796187 cgtgacacgatttcatcaacgtgtcacgattttggtaatgtcgagagt-tgttttgcagggtgctcaatcgtgacacgattttggaaaaacgtgacacga 4796285  T
Q  226 ttttcaa 232  Q
    |||||||    
T  4796286 ttttcaa 4796292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 47676659 - 47676579
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||||  ||| |||||||||||||| | ||||||  |||||||| |||||||||| ||||||||||||||||||||    
T  47676659 tcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttc 47676579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 25767453 - 25767389
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||||||| |||| |||||||||||||||||| |||||    
T  25767453 tggtttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgattttcaaacttgct 25767389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 21989485 - 21989364
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcag-gtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||| |||||||||| |||  ||||||||| ||  || |||||| ||||||| |||| |  |||||||| |||||||||| |||| |||||||||||    
T  21989485 cgtgacaagatttcatcatcgtgacacgattttgcaatgtcgtgagc-tggtttgcagggcgaccaatcgtggcacgattttgtgaaa-cgtgacacgat 21989388  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    |||| || ||| ||||||||||||    
T  21989387 tttccaacttgatgggtacgtttt 21989364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 4585807 - 4585885
Alignment:
Q  151 tcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    ||||||||||  ||| |||||||||| |||| ||||||  |||||||| ||| |||||| |||||||||||| ||||||    
T  4585807 tcacgattttctaggcagtgagcatgttttgcagggtgtccaatcgtgacactattttgggaaaacgtgacaagatttt 4585885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 4539046 - 4538994
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| |||||||  ||||||| |||||||||| ||||||||||||||||||||    
T  4539046 tttgaagggtgcctaatcgtgacacgattttgggaaaacgtgacacgattttc 4538994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 48408491 - 48408555
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| |||||||| ||||||||||||| |||| |||||    
T  48408491 tggtttgcagggtgccaaatcgtgacacgatcttgagaaatcgtgacacgatttgcaaacttgct 48408555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 2479867 - 2479792
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||   |||||||||||||||||| |||| ||| |||||||||||||| ||| ||| || |||||    
T  2479867 tggtttgcagggtgtcaaatcgtgtcacgattttgtgaaatcgttacacgattttcaaacttgttggttaagtttt 2479792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 23554725 - 23554764
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  23554725 caatcgtgacacgattttgggaaaacgtgacacgattttc 23554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 32358575 - 32358496
Alignment:
Q  152 cacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    |||||||||  ||| ||||||||||||||  |||||   ||||||||  ||||||||| ||||||||||||| |||||||    
T  32358575 cacgattttctaggcagtgagcatggttttcagggtatccaatcgtgatacgattttgggaaaacgtgacacaattttca 32358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 43863947 - 43863986
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  43863947 caatcgtgacacgattttgggaaaacgtgacacgattttc 43863986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 47264174 - 47264099
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||||||||||   ||||||| ||| ||| || |||| |||||||||||||||||| ||||||| || |||||    
T  47264174 tggtttgtagggtgtcaaatcgtggcacaattgtgtgaaatcgtgacacgattttcaaacttgctggttaagtttt 47264099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 35961503 - 35961457
Alignment:
Q  170 gagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaac 216  Q
    ||||||| |||  ||||||||||||||||||||||||||| ||||||    
T  35961503 gagcatgtttttcagggtgctcaatcgtgtcacgattttgggaaaac 35961457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 6360625 - 6360573
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| ||||||| |||| ||| |||||||||| | ||||||||||||||||||    
T  6360625 tttgcagggtgcccaattgtgacacgattttggggaaacgtgacacgattttc 6360573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 18409306 - 18409242
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  |||| || |||||| |||||||| |||||||||||| ||||| |||||    
T  18409306 tggtttgcagggtgccaaatcatgacacgatcttgagaaatcgtgacacgattctcaaacttgct 18409242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 21646550 - 21646486
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| |||  ||| |||||||||||||||||| |||||    
T  21646550 tggtttgcagggtgccaaatcgtgacacgatcttggaaaatcgtgacacgattttcaaacttgct 21646486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 34311365 - 34311285
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgatttt 208  Q
    |||||||||||||    ||||| ||||||||||  ||| ||||||||||||||| ||||||  ||||| || |||||||||    
T  34311365 cgtgacacgatttggcaaacgtgtcacgattttctaggcagtgagcatggtttgcagggtgtccaatcatgacacgatttt 34311285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 39731026 - 39731090
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| |||||||  ||||||| |||||| ||||| || ||||||||||||| |||| |||||    
T  39731026 tggtttgcagggtgccaaatcgtgacacgatcttgaggaatcgtgacacgatttgcaaacttgct 39731090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 48599991 - 48599939
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| ||||||| |||||||| ||||||| || | ||||||||||||||||||    
T  48599991 tttgcagggtgcacaatcgtgacacgattatggggaaacgtgacacgattttc 48599939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 4456587 - 4456465
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| |||||||||| |||| || ||||||||||| | |||||||||||||||||||||| |||| |||||||||||  |||    
T  4456587 cgtgacacgatttcatcaacgtgtcacgatttt-caggcagggagcatggtttctcagggtgctcaatcgtgtcacgaatttgggaaaacgtgacgtgat 4456489  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||  ||||||||    
T  4456488 tttcaaacttgctgaatacgtttt 4456465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 5701997 - 5702120
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| ||  ||||||  ||   ||||||||||||| | |||||||||||||||||||||||||||  |||||||||||||||    
T  5701997 cgtgacacgatttcatcaacgtgtcttgattttctagacggtgagcatggttttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacacgat 5702096  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||||||| ||||    
T  5702097 tttcaaacttgctgggtacatttt 5702120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 19175280 - 19175373
Alignment:
Q  158 ttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    |||||||| || ||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  19175280 ttttcaggcagggagcatggtttctcagggtgctcaatcgtgtcacgattttgggaaaacgtgacatgattttcaaacttgctgggtacgtttt 19175373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 22975963 - 22976042
Alignment:
Q  152 cacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    |||||||||| ||| |||| |||||||||  ||||||  |||||||| |||||||||| |||||||||||||||||||||    
T  22975963 cacgattttttaggcagtgggcatggttttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttca 22976042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 15212425 - 15212511
Alignment:
Q  145 aacgtttcacgatttttcaggtagtgagcatggttt-gtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||| ||||||||||  ||| |||||||||||||| | ||||||  |||||||| |||||||||| ||||||||||||||||||||    
T  15212425 aacgtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttc 15212511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 11383450 - 11383514
Alignment:
Q  167 agtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    |||||||||||||| |||||||  |||| ||| |||||||||| |||||||||||||||||||||    
T  11383450 agtgagcatggtttttagggtgtccaattgtgacacgattttgggaaaacgtgacacgattttca 11383514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 4743699 - 4743637
Alignment:
Q  168 gtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||| |||| ||||||  |||||||| |||||||||||| ||||||||||||||||||    
T  4743699 gtgagcatgttttgaagggtgtccaatcgtgacacgattttgaggaaacgtgacacgattttc 4743637  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 40221232 - 40221272
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  40221232 caatcgtgtcacgattttgggaaaacgtgacacgattttca 40221272  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 4733503 - 4733550
Alignment:
Q  183 agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  4733503 agggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttc 4733550  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 30143005 - 30143067
Alignment:
Q  168 gtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||| |||| ||||||  |||||||| |||||||||| ||||| ||||||||||||||    
T  30143005 gtgagcatgttttgcagggtgtccaatcgtgacacgattttgggaaaatgtgacacgattttc 30143067  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 42435714 - 42435652
Alignment:
Q  168 gtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||| |||| ||||||  |||||||| |||||||||| | ||||||||||||||||||    
T  42435714 gtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaacgtgacacgattttc 42435652  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 43036086 - 43036148
Alignment:
Q  168 gtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||| |||| ||||||  |||||||| ||||||||||  |||||||||||||||||||    
T  43036086 gtgagcatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgtgacacgattttc 43036148  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 23799141 - 23799217
Alignment:
Q  132 acacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgatttt 208  Q
    |||||||||||||||||| |||| | |||||||| || ||||||||||| | | ||||||||||||||||||| ||||    
T  23799141 acacgatttcatcaacgtgtcac-aattttcaggcagcgagcatggtttctcaaggtgctcaatcgtgtcacgttttt 23799217  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 12703121 - 12703081
Alignment:
Q  191 caatcgtgtcacgattttgagaaaacgtgacacgattttca 231  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  12703121 caatcgtgacacgattttgggaaaacgtgacacgattttca 12703081  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 27810971 - 27811023
Alignment:
Q  178 tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    |||| ||||||  |||||||| |||||||||||||||| ||||||||||||||    
T  27810971 tttgcagggtgtccaatcgtgacacgattttgagaaaatgtgacacgattttc 27811023  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 1261509 - 1261571
Alignment:
Q  177 gtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||| |||||||  ||||||| |||||| ||| |||| |||||||||||||||||| |||||    
T  1261509 gtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttcaaacttgct 1261571  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 2627411 - 2627475
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||||| | |||||  ||||||| |||||||||| |||| ||||||||||||| |||| |||||    
T  2627411 tggtttgcatggtgccaaatcgtgacacgattttgggaaatcgtgacacgatttgcaaacttgct 2627475  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 33351816 - 33351888
Alignment:
Q  151 tcacgatttttcaggtagtgagcatgg-tttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgaca 222  Q
    ||||||||||| ||| ||||| ||||| |||| ||||||  |||||||| |||||||||| |||||| |||||    
T  33351816 tcacgattttttaggcagtgaacatggttttgcagggtgtccaatcgtgacacgattttgggaaaacatgaca 33351888  T

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Target: scaffold0006 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 3070 - 2950
Alignment:
Q  130 tgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattt 228  Q
    |||||||||||||||||||| | |||||||  |||| || ||||||||||| | ||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  3070 tgacacgatttcatcaacgtgtaacgatttc-caggcagcgagcatggttttttagggtactcaatcgtgtcacgattttgggaaaacgtgacccgattt 2972  T
Q  229 tcaaaattgctgggtacgtttt 250  Q
    ||||| |||||||||| |||||    
T  2971 tcaaacttgctgggtatgtttt 2950  T

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Target: scaffold0006; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 6264 - 6142
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgt-agggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    |||||||||||||||||||||| ||||||||| | ||| || ||||||||||| | | |||  |||||||||||| ||||||| ||||| ||||||||||    
T  6264 cgtgacacgatttcatcaacgtgtcacgatttct-aggcagcgagcatggtttttcaaggtattcaatcgtgtcatgattttgggaaaatgtgacacgat 6166  T
Q  227 tttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||||||||||||    
T  6165 tttcaaacttgctgggtacgtttt 6142  T

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Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 86165 - 86066
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatt 227  Q
    |||||||||||||||||||||| |||||| ||| |||| || |||||||||||| ||||||||||||| || |||||||||| |||||||||||||||||    
T  86165 cgtgacacgatttcatcaacgtgtcacga-tttccaggcagggagcatggtttgcagggtgctcaatcatg-cacgattttgggaaaacgtgacacgatt 86068  T

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Target: scaffold0087 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 36398 - 36473
Alignment:
Q  175 tggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||   ||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  36398 tggtttgcagggtgtcaaatcgtggcacgattttgtgaaaacgtgacacaattttcaaacttgctgggtacgtttt 36473  T

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Target: scaffold0066 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 20920 - 20858
Alignment:
Q  168 gtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttc 230  Q
    ||||||||| |||| ||||||  ||||| || |||||||||| ||||||||||||||||||||    
T  20920 gtgagcatgttttgcagggtgtccaatcatgacacgattttgggaaaacgtgacacgattttc 20858  T

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Target: scaffold0286 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 10962 - 11065
Alignment:
Q  128 cgtgacacgatttcatcaacgtttcacgatttttcag-gtagtgagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgat 226  Q
    ||||||||||||||||   ||| |||||||||| ||  |  ||||||||| |||| ||||||  |||||||| |||||||||| | ||| ||||||||||    
T  10962 cgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacacgat 11061  T
Q  227 tttc 230  Q
    ||||    
T  11062 tttc 11065  T

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Target: scaffold0176 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 17767 - 17708
Alignment:
Q  170 gagcatggtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 229  Q
    ||||||| |||| ||||||  ||| |||| |||||||||| |||||||||||||||||||    
T  17767 gagcatgttttgcagggtgtccaaccgtgacacgattttgggaaaacgtgacacgatttt 17708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 577 - 639
Alignment:
Q  177 gtttgtagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgct 239  Q
    ||||| |||||||  ||||||| |||||| ||||| || |||||||||||||||||| |||||    
T  577 gtttgcagggtgccaaatcgtgacacgatcttgaggaatcgtgacacgattttcaaatttgct 639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 45713 - 45655
Alignment:
Q  192 aatcgtgtcacgattttgagaaaacgtgacacgattttcaaaattgctgggtacgtttt 250  Q
    ||||||| ||||||| || |||| |||||||||||||||||| ||||||| || |||||    
T  45713 aatcgtggcacgattctgtgaaatcgtgacacgattttcaaacttgctggctaagtttt 45655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 6777 - 6833
Alignment:
Q  152 cacgatttttcaggtagtgagcatggtttgtagggtgctcaatcgtgtcacgatttt 208  Q
    |||||||||  ||| ||||||||||||||| ||||||  |||||||| |||||||||    
T  6777 cacgattttctaggcagtgagcatggtttgcagggtgtccaatcgtgacacgatttt 6833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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