View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2015_low_17 (Length: 245)
Name: NF2015_low_17
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2015_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 35738687 - 35738901
Alignment:
| Q |
8 |
gagagagaagaatgctgggctaatttatattaaccactgctgcttttatttgtcagtctatgtagtttgaacttgtgtttatgtgtaattttgcaggcaa |
107 |
Q |
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| T |
35738687 |
gagagagaagaatgctgggctaatttatattaaccactgctgcttttatttgtcagtctatgtagtttgaacttgtgtttatgtgtaattttgcaggcaa |
35738786 |
T |
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| Q |
108 |
ttttttgttactggattacatcaaatttgttttcattgacgtatggaatgggtaaggaaacaaatgaatttgtttttatctgcactatcccaatgtcatt |
207 |
Q |
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| T |
35738787 |
ttttttgttactggattacatcaaatttgttttcattgacgtatggaatgggtaaggaaacaaatgaatttgtttttatctgcactatcccaatgtcatt |
35738886 |
T |
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| Q |
208 |
atttttcatttcagt |
222 |
Q |
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||||||||||||||| |
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| T |
35738887 |
atttttcatttcagt |
35738901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 44363704 - 44363832
Alignment:
| Q |
38 |
taaccactgctgcttttatttgtcagtctatgtagtttgaacttgtgtttatgtgtaattttgcaggcaattttttgttactggattacatcaaatttgt |
137 |
Q |
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||||||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||| ||||||| |
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| T |
44363704 |
taaccactgctgcttttatctgtcattctatgtggtttgaacttgtgtttatgtataattttgcaggcgctattttgttactggcttacatcgaatttgt |
44363803 |
T |
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| Q |
138 |
tttcattgacgtatggaatgggtaaggaa |
166 |
Q |
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||||||| || |||||||||||||||||| |
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| T |
44363804 |
tttcatttacatatggaatgggtaaggaa |
44363832 |
T |
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