View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2015_low_2 (Length: 669)
Name: NF2015_low_2
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2015_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Complemental strand, 32653231 - 32652568
Alignment:
| Q |
1 |
gatcggcaagcacagactcggcaacaaacccaagaatatgagtcatatccatcatnnnnnnngcacctacttcatctgctatctttccttgcataaaaga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32653231 |
gatcggcaagcacagactcggcaacaaacccaagaatatgagtcatatccatcataaaaaaagcacctacttcatctgctatctttccttgcataaaaga |
32653132 |
T |
|
| Q |
101 |
tgcaattagtttatcgcaaggaataaaatcacattgtatatagaagcagatgatgaagattaaaataaacatacttttctaatgcgagaataatcgacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32653131 |
tgcaattagtttatcgcaaggaataaaatcacattgtatacagaagcagatgatgaagattaaaataaacatacttttctaatgcgagaataattgacgt |
32653032 |
T |
|
| Q |
201 |
ctggaggatacacactaacagcaatgagctttggtcggaattcagcagcagttttctccagcccaataagatctgttgtaattcaaaagcaagtatgtta |
300 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32653031 |
ctggaggatacacactagcaacaatgagctttggtcggaattcagcagcagttttctccagcccaataagatctgttgtaattcaaaagcaagtatgtta |
32652932 |
T |
|
| Q |
301 |
ttccacaaataagccaatatatctaaaaacaattttaatgaaaatacaaacacctgttgattcatcaagttggtacggcataatttcaaaatattgcgag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32652931 |
ttccacaaataagccaatatatctaaaaacaattttaatgaaaatacaaacacctgttgattcatcaagtcggtacggcataatttcaaaatattgcgag |
32652832 |
T |
|
| Q |
401 |
gcgaaattatgagatagatgtcccttgtgagtcaaattcaaatactggtaacatataagtactgacattagaacaacaatgtaatg-------------- |
486 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
32652831 |
gcgaaattatgagataaatgtcccttgtgagtcaaattcaaatactggtaacatataatcactgacattagaaaaacaatgtaatggatttccactttgg |
32652732 |
T |
|
| Q |
487 |
gattggaaaaactaaacaaacttttaagtgaaagaaagatagtttaccattattcgatcacctagcttaagaattgaaaggtacactgcaaaattaatca |
586 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32652731 |
gattggaaaaattaaacaaac-tttaagtgaaagaaagatagtttaccattattcgatcacctagcttaagaattgaaatgtacactgcaaaattaatca |
32652633 |
T |
|
| Q |
587 |
cgctaccagctaatggtttaacatttacaccccacttgttacaatctagatggaatgcggcaagt |
651 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32652632 |
cgctaccagctaatggtttaacacttacaccccacttattacaatctagatggaatgcggcaagt |
32652568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 606 - 652
Target Start/End: Complemental strand, 23239444 - 23239398
Alignment:
| Q |
606 |
aacatttacaccccacttgttacaatctagatggaatgcggcaagtg |
652 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23239444 |
aacatttacaccccacttgttacaatctagatggaatgcggcaagtg |
23239398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 591 - 651
Target Start/End: Original strand, 34824251 - 34824311
Alignment:
| Q |
591 |
accagctaatggtttaacatttacaccccacttgttacaatctagatggaatgcggcaagt |
651 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
34824251 |
accagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagt |
34824311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 652
Target Start/End: Original strand, 44147637 - 44147891
Alignment:
| Q |
409 |
atgagatagatgtcccttgtgagtcaaattcaaatactggtaacatataagtactgacattagaacaacaatgtaatggatt---------------gga |
493 |
Q |
| |
|
|||||||| ||||||| |||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |
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| T |
44147637 |
atgagataaatgtcccccatgagccaaatccaaatactggtaacatataatta--gacattagaacaacaatgtaatggatttccactttggaatttgga |
44147734 |
T |
|
| Q |
494 |
aaaactaaacaaacttttaagtgaaagaaagatagtttaccattattcgatcacctagcttaagaattgaaaggtacactgcaaaattaatcacgctacc |
593 |
Q |
| |
|
||||| |||||| || |||||| ||||||| |||||||||||||||||||| | | | |||||||| | ||| |||||| |||| | | ||| |
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| T |
44147735 |
aaaaccaaacaacgtt--aagtgagagaaagacagtttaccattattcgatcatgtggttcaagaattgcatcgtatactgcagaattcgccggggaacc |
44147832 |
T |
|
| Q |
594 |
agctaatggtttaacatttacaccccacttgttacaatctagatggaatgcggcaagtg |
652 |
Q |
| |
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|| ||| |||| ||||||||||||||||||||||| ||| ||||||| ||| ||||||| |
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|
| T |
44147833 |
agataacggttgaacatttacaccccacttgttactatccagatggattgcagcaagtg |
44147891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 644
Target Start/End: Original strand, 5751692 - 5751817
Alignment:
| Q |
519 |
agaaagatagtttaccattattcgatcacctagcttaagaattgaaaggtacactgcaaaattaatcacgctaccagctaatggtttaacatttacaccc |
618 |
Q |
| |
|
||||| ||||||||||||||| |||||| | | |||||||||| ||| |||||||||||| | | ||||| |||||||| ||||||||||||| |
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| T |
5751692 |
agaaaaatagtttaccattatacgatcatgtggtttaagaattgcggtgtatactgcaaaattagccggggaaccagataatggttgaacatttacaccc |
5751791 |
T |
|
| Q |
619 |
cacttgttacaatctagatggaatgc |
644 |
Q |
| |
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||||||| || ||||||||| ||||| |
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| T |
5751792 |
cacttgtcaccatctagatgaaatgc |
5751817 |
T |
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