View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2015_low_3 (Length: 585)

Name: NF2015_low_3
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2015_low_3
NF2015_low_3
[»] chr1 (3 HSPs)
chr1 (22-449)||(5032090-5032517)
chr1 (489-575)||(5032557-5032643)
chr1 (177-218)||(6650678-6650719)
[»] chr5 (5 HSPs)
chr5 (406-449)||(28663554-28663597)
chr5 (406-449)||(25590159-25590202)
chr5 (404-449)||(29948338-29948383)
chr5 (406-449)||(21154214-21154257)
chr5 (406-449)||(21161349-21161392)
[»] chr3 (2 HSPs)
chr3 (399-447)||(10937488-10937536)
chr3 (177-217)||(49397493-49397533)
[»] chr8 (4 HSPs)
chr8 (406-449)||(28350494-28350537)
chr8 (405-449)||(12642364-12642408)
chr8 (406-443)||(29185462-29185499)
chr8 (174-214)||(13129755-13129795)
[»] chr7 (1 HSPs)
chr7 (406-449)||(7578740-7578783)
[»] chr6 (1 HSPs)
chr6 (405-449)||(17190874-17190918)
[»] chr2 (5 HSPs)
chr2 (405-449)||(23453737-23453781)
chr2 (406-449)||(19084686-19084729)
chr2 (408-449)||(17830674-17830715)
chr2 (405-449)||(16443195-16443239)
chr2 (406-446)||(18557456-18557496)
[»] chr4 (2 HSPs)
chr4 (406-443)||(8563638-8563675)
chr4 (177-218)||(13015510-13015551)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 22 - 449
Target Start/End: Original strand, 5032090 - 5032517
Alignment:
Q  22 caatgtttacgaattaaaatgctgccaaactgacatttttatgttattattatggtgtgtttctaacatttatctataattttggtgaaattcgtgagaa 121  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5032090 caatgtttacgaattaaaatgttgccaaactgacgtttttatgttattattatggtgtgtttctaatatttatctataattttggtgaaattcgtgagaa 5032189  T
Q  122 ttttagtcaataaaaaagaatgtgttatgatgtgtattagaaagtgtttacaacatttttgtttgaataagctaaattaatccacctaaattgacactct 221  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||||    
T  5032190 ttttagtcaataaaaaagaatgtgttatgatgtgtatttaaaagtgtttacaacatttttgtttgaagaagttaaattaatacatctaaattgacactct 5032289  T
Q  222 caattctcaagtcaataccaccaaaccaactcatgtgggtttaaagtgttcacaacattattatgttattatacattaaatttgggagtcattgagtcat 321  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5032290 caattctcaagtcaataccaccaaaccaacccatgtagatttaaagtgttcacaacattaatatgttattatacattaaatttgggagtcattgagtcat 5032389  T
Q  322 tgtgagacaaaggaaatatatttacatagctaaattgaatattttttagacatattttaccctaaaagtttaaaatctaataattgttatgaaattaatc 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5032390 tgtgagacaaaggaaatatatttacatagctaaattgaatattttttagacatattttaccctaaaagtttaaaatctaatagttgttatgaaattaatc 5032489  T
Q  422 taaaatattgcaagatattgtacaacat 449  Q
    |||| |||||||||||||||||||||||    
T  5032490 taaagtattgcaagatattgtacaacat 5032517  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 489 - 575
Target Start/End: Original strand, 5032557 - 5032643
Alignment:
Q  489 tatattgcattacttcacaagtgtgttctagggacatccacatcatattttcataacgaaaatctagttttggttgtttagcctttg 575  Q
    ||||||||||||||| |||||| | ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  5032557 tatattgcattactttacaagtatattctaggaacatctacatcatattttcataacgataatctagttttggttgtttggcctttg 5032643  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 6650719 - 6650678
Alignment:
Q  177 tttttgtttgaataagctaaattaatccacctaaattgacac 218  Q
    ||||| |||||| |||||||| ||||||||||||||||||||    
T  6650719 tttttttttgaagaagctaaactaatccacctaaattgacac 6650678  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 28663554 - 28663597
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28663554 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 28663597  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 25590202 - 25590159
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  25590202 tgttatgaaattaatctaaagtattgcatgatattgtacaacat 25590159  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 29948338 - 29948383
Alignment:
Q  404 attgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||    
T  29948338 attgttatgaaattaatctaaagtatggcaagatattgtgcaacat 29948383  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 21154257 - 21154214
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  21154257 tgttatgaaattaatttaatgtattgcaagatattgtacaacat 21154214  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 21161392 - 21161349
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  21161392 tgttatgaaattaatttaatgtattgcaagatattgtacaacat 21161349  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 10937536 - 10937488
Alignment:
Q  399 taataattgttatgaaattaatctaaaatattgcaagatattgtacaac 447  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  10937536 taattattgttatgaaattaatctaaaatattgtaagatattttacaac 10937488  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 49397493 - 49397533
Alignment:
Q  177 tttttgtttgaataagctaaattaatccacctaaattgaca 217  Q
    ||||| |||||| ||||||||||| ||||||||||||||||    
T  49397493 tttttttttgaagaagctaaattagtccacctaaattgaca 49397533  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 28350494 - 28350537
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    |||||||||||||||| ||| |||||||||||||||||||||||    
T  28350494 tgttatgaaattaatccaaagtattgcaagatattgtacaacat 28350537  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 12642364 - 12642408
Alignment:
Q  405 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||    
T  12642364 ttgttatgaaattaatcaaaagcattgcaagatattgtacaacat 12642408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 29185462 - 29185499
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgta 443  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  29185462 tgttatgaaattaatccaaaatattgcaatatattgta 29185499  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 13129795 - 13129755
Alignment:
Q  174 acatttttgtttgaataagctaaattaatccacctaaattg 214  Q
    |||||||| ||||||||||||||||||||||| | ||||||    
T  13129795 acatttttttttgaataagctaaattaatccatccaaattg 13129755  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 7578783 - 7578740
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    |||||||||||||||||||| ||||| |||||||||||||||||    
T  7578783 tgttatgaaattaatctaaagtattgtaagatattgtacaacat 7578740  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 17190918 - 17190874
Alignment:
Q  405 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||    
T  17190918 ttgttatgaaaataatctaaagaattgcaagatattgtacaacat 17190874  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 23453781 - 23453737
Alignment:
Q  405 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||    
T  23453781 ttgttatgaaattaatccaaagtattgtaagatattgtacaacat 23453737  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 19084729 - 19084686
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||    
T  19084729 tgttatgaaattgatcaaaagtattgcaagatattgtacaacat 19084686  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 17830674 - 17830715
Alignment:
Q  408 ttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    |||| ||||||||||||| ||||| |||||||||||||||||    
T  17830674 ttataaaattaatctaaagtattgtaagatattgtacaacat 17830715  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 16443195 - 16443239
Alignment:
Q  405 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 449  Q
    ||||||| ||||||||| |||  ||||||||||||||||||||||    
T  16443195 ttgttataaaattaatccaaagcattgcaagatattgtacaacat 16443239  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 18557456 - 18557496
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgtacaa 446  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  18557456 tgttatgaaattaatcaaaagtattgtaagatattgtacaa 18557496  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 8563638 - 8563675
Alignment:
Q  406 tgttatgaaattaatctaaaatattgcaagatattgta 443  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  8563638 tgttatgaaattgatctaaagtattgcaagatattgta 8563675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 13015551 - 13015510
Alignment:
Q  177 tttttgtttgaataagctaaattaatccacctaaattgacac 218  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  13015551 ttttttttttaataagctaaattaacccacctaaattgacac 13015510  T

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