View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2015_low_7 (Length: 416)
Name: NF2015_low_7
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2015_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 41102999 - 41103391
Alignment:
| Q |
12 |
atgaagtgttttgcattctgcaggggacactgctgcgctgtcagaatgcagcttctgtttttgacatagtggcagaagggaataataagcaccgagcttc |
111 |
Q |
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| T |
41102999 |
atgaagtgttttgcattctgcaggggacactgctgcgctgtcagaatgcagcttctgtttttgacacagtggcagaagggaataataagcaccgagcttc |
41103098 |
T |
|
| Q |
112 |
catgttctttccggagctgatggggtttggtcttaaaattggattgtgc----aggcttaaattttttcaagaagtggcatttttgtgagacttgtaatt |
207 |
Q |
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| T |
41103099 |
catgttcaatccggagctgatggggtttggtcttaaaattggattgtgcgtgcaggcttaaattttttcaagaagtggcatttttgtgagacttgtaatt |
41103198 |
T |
|
| Q |
208 |
cgtagcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttccaatgaagggttattcagtggatatcatggtggcaagtagattt |
307 |
Q |
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| T |
41103199 |
cgtagcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttccaatgaagggttattcagtggatatcatggtgacaagtagattt |
41103298 |
T |
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| Q |
308 |
gtggagtctctttctcgtgccaattcacagtaatatgctagtttggcgtaggcgtgcagatatggatgcaatctagatattttgaggcatctg |
400 |
Q |
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| T |
41103299 |
gtggagtctctttctcgtgccaattcacagtaatatgctagtttggcgtaggcgtgcagatatggatgtaatctagatattttgaggcatctg |
41103391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 180 - 396
Target Start/End: Original strand, 41088743 - 41088957
Alignment:
| Q |
180 |
aagtggcatttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttccaatgaagggttattc |
279 |
Q |
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| T |
41088743 |
aagtagcattttttagaggcttgcaattcgtagcagtttgtatttcattcttttatcaagtgattgtaagcaggtagatggttccaatgaagtgttattc |
41088842 |
T |
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| Q |
280 |
agtggatatcatggtggcaagtagatttgtggagtctctttctcgtgccaattcacagtaatatgctagtttggcgtaggcgtgcagatatggatgcaat |
379 |
Q |
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|| |||||||||||||| ||| |||||| ||| |||||||||| |||||||||| ||||| ||||||||||||| |||||||||| ||| || || ||| |
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| T |
41088843 |
agaggatatcatggtggtaaggagatttatggggtctctttcttgtgccaattcgcagtattatgctagtttggggtaggcgtgcggatgtg--tgtaat |
41088940 |
T |
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| Q |
380 |
ctagatattttgaggca |
396 |
Q |
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| T |
41088941 |
ctgcatattttgaggca |
41088957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 41080600 - 41080894
Alignment:
| Q |
12 |
atgaagtgttttgcattctgcaggggacactgctgcgctgtcagaatgcagcttctgtttttgacatagtggcagaagggaataataagcaccgagcttc |
111 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| |||||||| | || |
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| T |
41080600 |
atgacgtgttttgcattctgcaggggacaatgctgcagcgtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatgagcaccgatcctc |
41080699 |
T |
|
| Q |
112 |
catgttctttccggagctgatggggtttggtcttaaaattggattgtgcaggcttaaattttttcaagaagtggcatttttgtgagacttgtaattcgta |
211 |
Q |
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||| | || ||| |||| |||| ||||||| | ||| ||||| || |||||||||||||||||||| |||||||| |||| |||||||||| || |
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| T |
41080700 |
cattctgaatctggaactgaaggggaccggtcttagatttgtattgtacatgcttaaattttttcaagaagcagcatttttatgaggcttgtaattcata |
41080799 |
T |
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| Q |
212 |
gcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttccaatgaagggttattcagtggatatcatggtggcaagtagatttgtgg |
311 |
Q |
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| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||||| |
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| T |
41080800 |
gaagtttgcatttcattctttagtcaattgattgtgagcaaggagat-------------ggttattcagaggatatcatggtggcaatgagatttgtgg |
41080886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 188 - 351
Target Start/End: Original strand, 1216545 - 1216709
Alignment:
| Q |
188 |
tttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttcc-aatgaagggttattcagtggat |
286 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
1216545 |
tttttgtgaggattgtaattcgtagcaatttgcatttaattctttactcaagtgattgtgagcagggagaaggttccaaatgaagggttattcaacggat |
1216644 |
T |
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| Q |
287 |
atcatggtggcaagtagatttgtggagtctctttctcgtgccaattcacagtaatatgctagttt |
351 |
Q |
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|| ||||||||||| ||||||||||||||||||||| |||||||||| | ||| || |||||||| |
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| T |
1216645 |
ataatggtggcaaggagatttgtggagtctctttcttgtgccaattctcggtattaagctagttt |
1216709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 1216372 - 1216456
Alignment:
| Q |
13 |
tgaagtgttttgcattctgcaggggacactgctgcgctgtcagaatgcagcttctgtttttgacatagtggcagaagggaataat |
97 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| |||||||| ||| ||||||| ||||||| |
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| T |
1216372 |
tgaagtgttttgcattttgcaggggacactactgcggtgtcagaatggagcttctatttttgacgcagtagcagaagagaataat |
1216456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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