View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2015_low_8 (Length: 415)

Name: NF2015_low_8
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2015_low_8
NF2015_low_8
[»] chr1 (5 HSPs)
chr1 (18-392)||(31338104-31338478)
chr1 (29-94)||(31370754-31370819)
chr1 (23-91)||(33901511-33901579)
chr1 (23-86)||(35974572-35974635)
chr1 (29-91)||(15064582-15064644)
[»] chr8 (2 HSPs)
chr8 (32-93)||(28201653-28201714)
chr8 (35-87)||(43392104-43392156)
[»] chr7 (2 HSPs)
chr7 (23-90)||(38529582-38529649)
chr7 (308-380)||(38532388-38532460)
[»] chr5 (2 HSPs)
chr5 (32-89)||(13124028-13124085)
chr5 (32-92)||(28452459-28452519)
[»] chr4 (1 HSPs)
chr4 (34-90)||(3038859-3038915)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 31338478 - 31338104
Alignment:
Q  18 ccgactatgtcccaacttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagttttcaattcattcttccactcaattaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338478 ccgactatgtcccaacttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagttttcaattcattcttccactcaattaa 31338379  T
Q  118 ttggtactgaccctattttatttattttagtactaatttcaatcataattattnnnnnnntattatattttttggtacaaaagaacacatttattgttaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  31338378 ttggtactgaccctattttatttattttagtactaatttcaatcataattattaaaaaaatattatattttttggtacaaaagaacacatttattgttaa 31338279  T
Q  218 tttatagaacaatatcgatccatgatgagacagagaaaccacaaccacaatatatagctaacgaaaacatttttattttctttgtgtcgacaggatgttt 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31338278 tttatagaataatatcgatccatgatgagacagagaaaccacaaccacaatatatagctaacgaaaacatttttattttctctgtgtcgacaggatgttt 31338179  T
Q  318 attgattcatgcaagcgtctacgtatcatgaaaggaaaggaagccattggactcggttagtatgatctttattta 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338178 attgattcatgcaagcgtctacgtatcatgaaaggaaaggaagccattggactcggttagtatgatctttattta 31338104  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 31370754 - 31370819
Alignment:
Q  29 ccaacttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagttttc 94  Q
    ||||||||||||||||||||||| || ||||||||||| || ||||| || |||||||||||||||    
T  31370754 ccaacttatgaagacaaagatggtgattggatgcttgttggagatgttccttgggagtaagttttc 31370819  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 33901579 - 33901511
Alignment:
Q  23 tatgtcccaacttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagtt 91  Q
    ||||| ||||| |||||||| || ||||||||||||||||| || || ||||| |||||||||||||||    
T  33901579 tatgtgccaacctatgaagataaggatggcgactggatgctcgtgggagatgtcccatgggagtaagtt 33901511  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 35974635 - 35974572
Alignment:
Q  23 tatgtcccaacttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagt 86  Q
    ||||| ||||| ||||||||||||||||| || ||||||||||| |||||||| || |||||||    
T  35974635 tatgtaccaacatatgaagacaaagatggtgattggatgcttgttggtgatgttccttgggagt 35974572  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 15064582 - 15064644
Alignment:
Q  29 ccaacttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagtt 91  Q
    ||||| ||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||    
T  15064582 ccaacctatgaagacaaggatggtgactggatgctagttggagatgttccatgggagtaagtt 15064644  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 28201714 - 28201653
Alignment:
Q  32 acttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagtttt 93  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||    
T  28201714 acttatgaagataaagatggtgactggatgcttgtaggagatgtaccatgggagtaagtttt 28201653  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 43392156 - 43392104
Alignment:
Q  35 tatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagta 87  Q
    ||||||||||| ||||| || |||||||| || |||||||| |||||||||||    
T  43392156 tatgaagacaaggatggtgattggatgctagttggtgatgttccatgggagta 43392104  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 38529582 - 38529649
Alignment:
Q  23 tatgtcccaacttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagt 90  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||    
T  38529582 tatgttccaacctatgaagacaaggatggtgactggatgcttgtcggtgacgtcccatgggagtaagt 38529649  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 38532388 - 38532460
Alignment:
Q  308 caggatgtttattgattcatgcaagcgtctacgtatcatgaaaggaaaggaagccattggactcggttagtat 380  Q
    |||||||||| |||| |||||||| ||| | |||||||||||||||||||| || |||||  | |||||||||    
T  38532388 caggatgtttgttgaatcatgcaaacgtttgcgtatcatgaaaggaaaggaggctattggtataggttagtat 38532460  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 13124085 - 13124028
Alignment:
Q  32 acttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaag 89  Q
    ||||||||||| |||||||| |||||||||||||| || || ||||||||||||||||    
T  13124085 acttatgaagataaagatggagactggatgcttgtaggggacgtaccatgggagtaag 13124028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 28452459 - 28452519
Alignment:
Q  32 acttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagttt 92  Q
    |||||||| || |||||||| || |||||||||||||||||||| || |||||||||||||    
T  28452459 acttatgaggataaagatggtgattggatgcttgtcggtgatgttccctgggagtaagttt 28452519  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 3038915 - 3038859
Alignment:
Q  34 ttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagt 90  Q
    |||||| ||||||||||| ||||||||||| || || ||||| || |||||||||||    
T  3038915 ttatgaggacaaagatggtgactggatgctggttggagatgtcccttgggagtaagt 3038859  T

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