View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2015_low_9 (Length: 382)
Name: NF2015_low_9
Description: NF2015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2015_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 29024243 - 29023889
Alignment:
| Q |
1 |
attaattgaattgattatcaaaccccgtgacatagaaataaagcaaacttttgtgttatatattcatctagattttaattcacattgtttgtatcttaca |
100 |
Q |
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| T |
29024243 |
attaattgaattgattatcaaaccccgtgacatagaaataaagcaaacttttgtgttatatattgatctagattttaattcacattgtttgtatcttaca |
29024144 |
T |
|
| Q |
101 |
tgcatatctactttcttaacccattggctcttctagacactttctaaaggtaaggtcctcaattatatatagtttcattacattacattagttcttaaac |
200 |
Q |
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| T |
29024143 |
tgcatatctactctttttttc---tgtctcttctagacactttcttaaggtaaggtcctcaattatatatagttt-----cattacattagttcttaaac |
29024052 |
T |
|
| Q |
201 |
ttataaatttggctacaaattaaacttcaatttccaaaaaatagtgtccannnnnnnnaagcatggaaaatgaccaaattacaagcaaggaaatgaaagt |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29024051 |
ttataaatttggctac----taaacttcaatttccaaaaaatagtgtccattttttttaagcatggaaaatgaacaaattacaagcaaggaaatgaaagt |
29023956 |
T |
|
| Q |
301 |
ggagattcaatcaagaagtgaagttatgtcaagtactataggggtagaggtacaaggaggttcaaat |
367 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29023955 |
ggagattcaatcaaggagtgaagttatgtcaagtactataggggtagaggtacaagggggttcaaat |
29023889 |
T |
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