View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_high_11 (Length: 343)
Name: NF20160_high_11
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 6879379 - 6879057
Alignment:
| Q |
1 |
ttagctccaaccaactctactagccaaaatcaaccaaaaggcacacagtagcaacaatttagacacaactagaaaactacaaagcatagacacaaatata |
100 |
Q |
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| T |
6879379 |
ttagctccaaccaactctactagccaaaatcaaacaaaaggcacacagtagcaacaatttagacacaacta-----ctgcaaagcatagacacaaatata |
6879285 |
T |
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| Q |
101 |
gtaagttgccaaaggtgacaaaaa------------gctaaaacagaacatcctcctttattaatcaaaaggaacaacaattaagccccaaaagaccata |
188 |
Q |
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| T |
6879284 |
gtaagttgccaagggtgacaaaaaactatacaaaaagctaaaacagaacatcctcctttattaatcaaaaggaacaacaattaag---------accata |
6879194 |
T |
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| Q |
189 |
taaatcaaagatttagattaatattatgatcattatgcaattatcttgaaattacttgcaaaaacctcaaatattgttattaactgtaatttcaagattg |
288 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6879193 |
caaatcaaagatttagattaatattgtgatcattatgcaattatcttgaaattacttgcaaaaacctcaaatattgttattaactgtaatttcaagattg |
6879094 |
T |
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| Q |
289 |
ctacatcaactaccttaatatatatattgcttcaact |
325 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||| |
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| T |
6879093 |
ctacatcaactagcttaatagatatattgcttcaact |
6879057 |
T |
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