View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_high_12 (Length: 342)
Name: NF20160_high_12
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 43091101 - 43090776
Alignment:
| Q |
17 |
agaaggggaatctgatcccctcattaacgtggaaaatggaagtacaatattgaacaagagaccccctatttggaataaggaaaaagactaactctataag |
116 |
Q |
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| T |
43091101 |
agaaggggaatctgatcccctcattaacgtggaaaatggaagtacaatattgaacaagagaccccctatttggaataaggaaaaagactaactctataag |
43091002 |
T |
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| Q |
117 |
agtacattcaatctccactaagaatagtaaatccttagtggaattatatcctaagttaaaaagtttgacatactcaaaatttaaataccatggtgatttg |
216 |
Q |
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| T |
43091001 |
agtacattcaatctccactaagaatagtaaatccttagtggaattatatcctaagttaaaaagtttgacatactcaaaatttaaataccatggtgatttg |
43090902 |
T |
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| Q |
217 |
attcactcgttacaattagtttagcgttgtgtgcattagtagtcaactaacagtatattattagcggaaagaagttcatggtattattcaagtttgggcc |
316 |
Q |
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| T |
43090901 |
attcactcgttacaattagtttagtgttgtgtgcattagtagtcaactaacaatatattattagcggaaagaagttcatggtattattcaagtttgggcc |
43090802 |
T |
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| Q |
317 |
aacaaatttggctcgatttaacttgt |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43090801 |
aacaaatttggctcgatttaacttgt |
43090776 |
T |
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