View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_high_14 (Length: 315)

Name: NF20160_high_14
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_high_14
NF20160_high_14
[»] chr8 (9 HSPs)
chr8 (136-297)||(14295064-14295225)
chr8 (11-112)||(14295245-14295346)
chr8 (54-112)||(27786554-27786612)
chr8 (57-112)||(3072281-3072336)
chr8 (66-107)||(36206252-36206293)
chr8 (66-105)||(399518-399557)
chr8 (57-112)||(8831017-8831072)
chr8 (66-112)||(29369409-29369455)
chr8 (66-102)||(3801298-3801334)
[»] chr5 (5 HSPs)
chr5 (54-105)||(36868587-36868638)
chr5 (55-102)||(32278461-32278507)
chr5 (66-102)||(788032-788068)
chr5 (55-107)||(15188263-15188315)
chr5 (66-102)||(19215714-19215750)
[»] chr2 (1 HSPs)
chr2 (66-112)||(18811481-18811527)
[»] chr1 (5 HSPs)
chr1 (54-112)||(41034786-41034844)
chr1 (66-112)||(3374580-3374626)
chr1 (66-112)||(19393908-19393954)
chr1 (57-107)||(39332624-39332674)
chr1 (65-102)||(13061716-13061753)
[»] chr7 (3 HSPs)
chr7 (66-107)||(7543852-7543893)
chr7 (66-102)||(19407645-19407681)
chr7 (56-112)||(29132189-29132245)
[»] chr4 (1 HSPs)
chr4 (55-112)||(18522040-18522097)
[»] chr3 (4 HSPs)
chr3 (66-107)||(29347131-29347172)
chr3 (66-107)||(51525164-51525205)
chr3 (53-112)||(26796582-26796640)
chr3 (66-112)||(35526303-35526348)
[»] chr6 (1 HSPs)
chr6 (54-104)||(10990310-10990360)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 136 - 297
Target Start/End: Complemental strand, 14295225 - 14295064
Alignment:
Q  136 tacatcatggttagtaaatgtcattttctttgatgagagtctgccaatatattttgaatcttccaagcaatacagttaaaagatatggtgtgaaaagtca 235  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14295225 tacatcatggttagtaaatgtcattttctttgatgagagtcagccaatatattttgaatcttccaagcaatacagtcaaaagatatggtgtgaaaagtca 14295126  T
Q  236 tgagtggtaatgaatgaatgatgggtgctgagaaaattcatggtgggttgttgggacattgt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14295125 tgagtggtaatgaatgaatgatgggtgctgagaaaattcatggtgggttgttgggacattgt 14295064  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 14295346 - 14295245
Alignment:
Q  11 taatactaattagcaattttgttaatgatgacttgcaatacatttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  14295346 taatactaattagcaattttgttaatgatgacttgcaatacatttgtgactgtgctgtattggttcaggcctctcctgtcttttatattttagtgctttg 14295247  T
Q  111 at 112  Q
    ||    
T  14295246 at 14295245  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 27786612 - 27786554
Alignment:
Q  54 ttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    |||||||| || ||||||||||||||||||| |||| ||||||||||||||||| ||||    
T  27786612 ttgtgactttgttgtattggttcaggcctctcctgtattttatattttagtgctttgat 27786554  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 3072336 - 3072281
Alignment:
Q  57 tgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||| || ||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  3072336 tgactttgttgtattggttcaggcatctcctgtcttttatattttagtgctttgat 3072281  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 36206293 - 36206252
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  36206293 tgtattgattcaggcctctcctgtcttttatattttagtgct 36206252  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 399557 - 399518
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtg 105  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  399557 tgtattggttcaggcatctcctgtcttttatattttagtg 399518  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 8831072 - 8831017
Alignment:
Q  57 tgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||| || ||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  8831072 tgactttgttgtattggttcagacatctcctgtcttttatattttagtgctttgat 8831017  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 29369409 - 29369455
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||| ||||||||| ||||||||||||||||| |||| ||||    
T  29369409 tgtattggtccaggcctctcctgtcttttatattttattgctttgat 29369455  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 3801298 - 3801334
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  3801298 tgtattggttcagacctctcctgtcttttatatttta 3801334  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 36868587 - 36868638
Alignment:
Q  54 ttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtg 105  Q
    ||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  36868587 ttgtgactgtgttgtattggttcaggcctctcctatcttttatattttagtg 36868638  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 32278507 - 32278461
Alignment:
Q  55 tgtgactgtgctgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||| || ||||||||||||||||||||||| |||||||||||||    
T  32278507 tgtgactctgatgtattggttcaggcctcttctg-cttttatatttta 32278461  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 788068 - 788032
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  788068 tgtattggttcaggcttctcctgtcttttatatttta 788032  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 15188263 - 15188315
Alignment:
Q  55 tgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||||| || |||||| |||||||| |||  |||||||||||||||||||||    
T  15188263 tgtgactctgttgtattcgttcaggcatctcttgtcttttatattttagtgct 15188315  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 19215714 - 19215750
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||||||||||||||| || ||||||||||||||    
T  19215714 tgtattggttcaggcctctcctatcttttatatttta 19215750  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 18811527 - 18811481
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  18811527 tgtattggttcaggcctctcctgtcttttatattttagtgctttgat 18811481  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 41034844 - 41034786
Alignment:
Q  54 ttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    |||||||| || ||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  41034844 ttgtgactctggtgtattggttcagacctctcctgtcttttatattttagtgctttgat 41034786  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 3374580 - 3374626
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  3374580 tgtattggttcaggcatcttatgtcttttatattttagtgctttgat 3374626  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 19393954 - 19393908
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  19393954 tgtattggttcagacatctcctgtcttttatattttagtgctttgat 19393908  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 39332624 - 39332674
Alignment:
Q  57 tgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||| || ||||||| ||||||| ||| ||||||||||||||||||||||    
T  39332624 tgactctgttgtattgattcaggcatctcctgtcttttatattttagtgct 39332674  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 13061753 - 13061716
Alignment:
Q  65 ctgtattggttcaggcctcttctgtcttttatatttta 102  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  13061753 ctgtattggttcgggcctctgctgtcttttatatttta 13061716  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 7543893 - 7543852
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  7543893 tgtattggttcaggcctctcctgtcttttatattttattgct 7543852  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 19407681 - 19407645
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19407681 tgtattggttcaggcctctcctgtcttttatatttta 19407645  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 29132245 - 29132189
Alignment:
Q  56 gtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    |||||| | ||||||||||||| | |||||||||||||||||| ||| |||| ||||    
T  29132245 gtgactctactgtattggttcatgtctcttctgtcttttatatgttattgctttgat 29132189  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 18522097 - 18522040
Alignment:
Q  55 tgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||| || | ||||||||||||||||| ||||||||||||||||| |||| ||||    
T  18522097 tgtgactctgatatattggttcaggcctctcctgtcttttatattttattgctttgat 18522040  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 29347131 - 29347172
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  29347131 tgtattggttcaggcctctcctgtcttttatattttattgct 29347172  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 51525164 - 51525205
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  51525164 tgtattggctcaggcctctcctgtcttttatattttagtgct 51525205  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 26796640 - 26796582
Alignment:
Q  53 tttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||| || |||||||||||| || ||||||||||||||| |||||||||| ||||    
T  26796640 tttgtgactctgttgtattggttcaagcatcttctgtcttttat-ttttagtgctttgat 26796582  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 35526348 - 35526303
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  35526348 tgtattggttcaggcctct-ctgtcttttatattttattgctttgat 35526303  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 10990310 - 10990360
Alignment:
Q  54 ttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagt 104  Q
    |||||||| |||||||||||||||| ||||| | |||||| ||||||||||    
T  10990310 ttgtgactctgctgtattggttcagacctctcccgtctttaatattttagt 10990360  T

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