View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_high_15 (Length: 310)
Name: NF20160_high_15
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4652142 - 4651851
Alignment:
| Q |
1 |
ttatgagtgatcaagagtgtgaccaacatttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4652142 |
ttatgagtgatcaagagtgtgaccaacatttcgaaagatcccacacctacaaggagagcacagcctcagcgagggcaagtactcaagaacattttttctc |
4652043 |
T |
|
| Q |
101 |
gaatattgtgaatccaagaccacgatcatattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652042 |
gaatattgtgaatccaagaccacgatcatattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgta |
4651943 |
T |
|
| Q |
201 |
aacatgtaatatcaaaactaaataattttagcacttagcaaaaagatgttgtttgatcatgtcttgaattttctagtaagtaaggccttcat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4651942 |
aacatgtaatatcaaaactaaataattttagcacttagcaaaaagatgttgtttgatcatgtcttgaattttctagtaagtaaggccttcat |
4651851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 27 - 289
Target Start/End: Complemental strand, 4671203 - 4670944
Alignment:
| Q |
27 |
catttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgat |
126 |
Q |
| |
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||||||| |||||||| |||||| ||||||| |||| |||||| ||| |||||||||||||||||| ||| || | |||| ||||| |||| |||||| |
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| T |
4671203 |
catttcgcaagatcccgcacctataaggagagcacaatctcagcgaggccaagtactcaagaacattctttttctgagattgggaatcaaagaacacgat |
4671104 |
T |
|
| Q |
127 |
catattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgtaaacatgtaatatcaaaactaaataat |
226 |
Q |
| |
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| |||||||||||||| |||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4671103 |
cgtattcatgtcaaaatttcaaagttaacatttagcgattaatatcgaacaccactttatatatgtatagcgta---atgtaatatcaaaactaaataat |
4671007 |
T |
|
| Q |
227 |
tttagcacttagcaaaaagatgttgtttgatcatgtcttgaattttctagtaagtaaggcctt |
289 |
Q |
| |
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|||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
4671006 |
tttagcacttggcgaaaagatgttgtttgatcatatcttgaattttctagtaagttaggcctt |
4670944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 292
Target Start/End: Complemental strand, 4642258 - 4641996
Alignment:
| Q |
27 |
catttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgat |
126 |
Q |
| |
|
||||||| ||||||||| || | ||||||| |||| |||||| ||| ||| ||| |||||||| ||||||| | ||| ||||| || | ||||| |
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| T |
4642258 |
catttcgcaagatcccagacttttaaggagagcacaatctcagcgaggtcaattacaaaagaacatcttttctctgagattaggaatcaaaaaagacgat |
4642159 |
T |
|
| Q |
127 |
catattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgtaaacatgtaatatcaaaactaaataat |
226 |
Q |
| |
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| ||||||||||||||| |||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4642158 |
cgtattcatgtcaaaacttcaaagtttatatttagcagttaatatggaacaccaccttatatatgtatagcgtaa---tgtaatatcaaaactaaataat |
4642062 |
T |
|
| Q |
227 |
tttagcacttagcaaaaagatgttgtttgatcatgtcttgaattttctagtaagtaaggccttcat |
292 |
Q |
| |
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|| || ||||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||| |
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| T |
4642061 |
ttcagtacttagcgaaaagatgttgtttgatcatatcttgaattttctagtaagttaggcattcat |
4641996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 4635317 - 4635192
Alignment:
| Q |
121 |
cacgatcatattcatgtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgtatagcgtaaacatgtaatatcaaaacta |
220 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| ||||||| |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| |
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| T |
4635317 |
cacgatcgtattcatgtcaaaacttcaaagtttatatttagcggttaacatagaacaccactt-atatatgtatagcgtaa---tgtaatatcaaaacta |
4635222 |
T |
|
| Q |
221 |
aataattttagcacttagcaaaaagatgtt |
250 |
Q |
| |
|
|||||||||||||||| | |||||||||| |
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| T |
4635221 |
aataattttagcacttggtgaaaagatgtt |
4635192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 4676583 - 4676433
Alignment:
| Q |
27 |
catttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgat |
126 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||| ||| ||||||||||| |||| |||| |||||| | | || ||| |||||| | || |
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| T |
4676583 |
catttcgcaagatcccacacctataaggagagcacagtctctacaagggcaagtcctcatgaactccctttctctgagaatggttatcaaagaccgcaat |
4676484 |
T |
|
| Q |
127 |
catattcatgtcaaaacctcaaagtttacatttagcaattaatatggaaca |
177 |
Q |
| |
|
||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
4676483 |
catgttcatatcaaaacctcaaagtttatatttagcaattaatatggaaca |
4676433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 268
Target Start/End: Complemental strand, 4665507 - 4665272
Alignment:
| Q |
36 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgatcatattcat |
135 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| ||| | |||||| |||||| |||||| |||| ||||| |||| |||| || ||||||| |
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| T |
4665507 |
agatcgcacacctacaaggagagcacagtctcagcgaggctaggtactcgagaacagcctttctctgggattgggaatcaaagaacacggtcgtattcat |
4665408 |
T |
|
| Q |
136 |
gtcaaaacctcaaagtttacatttagcaattaatatggaacaacactttatatatgta----tagcgtaaacatgta-atatcaaaactaaataatttta |
230 |
Q |
| |
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| |||||| ||||| |||| |||||||| || | |||||||| | |||||| ||||| ||| |||||||| || | |||||||||||||||| |
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| T |
4665407 |
gccaaaacttcaaaatttatatttagcagtt-acatggaacacccttttatacatgtaagtgtagtgtaaacatatatagtgtaaaactaaataattttt |
4665309 |
T |
|
| Q |
231 |
gcacttagca-aaaagatgttgtttgatcatgtcttgaa |
268 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||| |
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| T |
4665308 |
gcac--agcataaaagatgttgtttgatcatatcttgaa |
4665272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 4660373 - 4660318
Alignment:
| Q |
36 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaaca |
91 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||| |||||||||||||||| |
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|
| T |
4660373 |
agatcccacacctacaaggagagtacaatctcagcgaggccaagtactcaagaaca |
4660318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 4629481 - 4629355
Alignment:
| Q |
36 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgatcatattcat |
135 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| ||| | |||||| |||||| |||||| |||| ||||| |||| |||| || ||||||| |
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|
| T |
4629481 |
agatcgcacacctacaaggagagcacagtctcagcgaggctaggtactcgagaacagcctttctctgggattgggaatcaaagaacacggtcgtattcat |
4629382 |
T |
|
| Q |
136 |
gtcaaaacctcaaagtttacatttagc |
162 |
Q |
| |
|
| |||||| ||||| |||| ||||||| |
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|
| T |
4629381 |
gccaaaacttcaaaatttatatttagc |
4629355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 18927310 - 18927457
Alignment:
| Q |
36 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatattgtgaatccaagaccacgatcatattcat |
135 |
Q |
| |
|
||||||||||||| ||||||| || | ||| || |||||||||||||| ||||| |||||| | |||| |||| |||||||||||| ||||||| |
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|
| T |
18927310 |
agatcccacaccttgaaggagagcaatgtctcggcgagggcaagtactcatgaacaccctttctctgaaattggtaatcaaagaccacgatcgtattcat |
18927409 |
T |
|
| Q |
136 |
gtcaaaacctcaaagtttacatttagcaattaatatggaacaacactt |
183 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||||| ||||| |
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|
| T |
18927410 |
gtcaaaaccttagagtttatatttagcaattaatatggaacaccactt |
18927457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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