View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_high_16 (Length: 310)

Name: NF20160_high_16
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_high_16
NF20160_high_16
[»] chr7 (6 HSPs)
chr7 (9-150)||(6903717-6903860)
chr7 (265-295)||(6973547-6973577)
chr7 (266-295)||(38889538-38889567)
chr7 (267-295)||(3766808-3766836)
chr7 (267-295)||(9233807-9233835)
chr7 (267-295)||(31077948-31077976)
[»] chr3 (3 HSPs)
chr3 (265-295)||(52974098-52974128)
chr3 (267-295)||(51425837-51425865)
chr3 (267-295)||(53752745-53752773)
[»] chr8 (8 HSPs)
chr8 (266-295)||(33617968-33617997)
chr8 (266-295)||(42880944-42880973)
chr8 (267-295)||(8034457-8034485)
chr8 (263-295)||(9187268-9187300)
chr8 (267-295)||(26280829-26280857)
chr8 (267-295)||(36540284-36540312)
chr8 (267-295)||(37717360-37717388)
chr8 (267-295)||(38955239-38955267)
[»] chr6 (3 HSPs)
chr6 (266-295)||(27094852-27094881)
chr6 (267-295)||(13732809-13732837)
chr6 (267-295)||(31802050-31802078)
[»] chr5 (4 HSPs)
chr5 (266-295)||(5900288-5900317)
chr5 (267-295)||(31074172-31074200)
chr5 (267-295)||(35512001-35512029)
chr5 (267-295)||(40091474-40091502)
[»] chr4 (5 HSPs)
chr4 (266-295)||(43481084-43481113)
chr4 (266-295)||(45673648-45673677)
chr4 (267-295)||(3036100-3036128)
chr4 (267-295)||(5165854-5165882)
chr4 (267-295)||(52798275-52798303)
[»] chr2 (6 HSPs)
chr2 (266-295)||(5062293-5062322)
chr2 (266-295)||(22718106-22718135)
chr2 (265-293)||(7379647-7379675)
chr2 (267-295)||(38557268-38557296)
chr2 (267-295)||(39408735-39408763)
chr2 (267-295)||(44021071-44021099)
[»] scaffold0028 (1 HSPs)
scaffold0028 (267-295)||(112105-112133)
[»] chr1 (4 HSPs)
chr1 (266-294)||(4553592-4553620)
chr1 (265-293)||(12048178-12048206)
chr1 (267-295)||(26550491-26550519)
chr1 (267-295)||(44732630-44732658)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 6903717 - 6903860
Alignment:
Q  9 agtgagatgaataatattc--agtttgaacggtgaacctataatcatttggtaaaatatttgctctcacgagcttctaatatctttcattaacttataac 106  Q
    |||||||||||||||||||  |||||||| ||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6903717 agtgagatgaataatattcgaagtttgaatggtaaaactatagttatttggtaaaatatttgctctcacgagcttctaatatctttcattagcttataac 6903816  T
Q  107 aatttgtttgagacacttcaagttgtgtttgagcttaaacaaca 150  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  6903817 aatttgtttgagacactccaagttgtgtttgagcttaaacaaca 6903860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 6973577 - 6973547
Alignment:
Q  265 tcatccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||||    
T  6973577 tcatccccgtgagcttaactcagttggtagg 6973547  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 38889567 - 38889538
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  38889567 catccccgtgagcttaactcagttggtagg 38889538  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 3766808 - 3766836
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  3766808 atccccgtgagcttaactcagttggtagg 3766836  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 9233835 - 9233807
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  9233835 atccccgtgagcttaactcagttggtagg 9233807  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 31077976 - 31077948
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  31077976 atccccgtgagcttaactcagttggtagg 31077948  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 52974128 - 52974098
Alignment:
Q  265 tcatccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||||    
T  52974128 tcatccccgtgagcttaactcagttggtagg 52974098  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 51425837 - 51425865
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  51425837 atccccgtgagcttaactcagttggtagg 51425865  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 53752773 - 53752745
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  53752773 atccccgtgagcttaactcagttggtagg 53752745  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 33617968 - 33617997
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  33617968 catccccgtgagcttaactcagttggtagg 33617997  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 42880944 - 42880973
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  42880944 catccccgtgagcttaactcagttggtagg 42880973  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 8034485 - 8034457
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  8034485 atccccgtgagcttaactcagttggtagg 8034457  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 9187300 - 9187268
Alignment:
Q  263 actcatccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||| |||||||||||||    
T  9187300 actcatccccgtgagcttagctcagttggtagg 9187268  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 26280857 - 26280829
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  26280857 atccccgtgagcttaactcagttggtagg 26280829  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 36540284 - 36540312
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  36540284 atccccgtgagcttaactcagttggtagg 36540312  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 37717360 - 37717388
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  37717360 atccccgtgagcttaactcagttggtagg 37717388  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 38955267 - 38955239
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  38955267 atccccgtgagcttaactcagttggtagg 38955239  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 27094881 - 27094852
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  27094881 catccccgtgagcttaactcagttggtagg 27094852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 13732809 - 13732837
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  13732809 atccccgtgagcttaactcagttggtagg 13732837  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 31802050 - 31802078
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  31802050 atccccgtgagcttaactcagttggtagg 31802078  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 5900288 - 5900317
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  5900288 catccccgtgagcttaactcagttggtagg 5900317  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 31074200 - 31074172
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  31074200 atccccgtgagcttaactcagttggtagg 31074172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 35512029 - 35512001
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  35512029 atccccgtgagcttaactcagttggtagg 35512001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 40091474 - 40091502
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  40091474 atccccgtgagcttaactcagttggtagg 40091502  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 43481113 - 43481084
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  43481113 catccccgtgagcttaactcagttggtagg 43481084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 45673648 - 45673677
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  45673648 catccccgtgagcttaactcagttggtagg 45673677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 3036128 - 3036100
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  3036128 atccccgtgagcttaactcagttggtagg 3036100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 5165854 - 5165882
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  5165854 atccccgtgagcttaactcagttggtagg 5165882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 52798275 - 52798303
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  52798275 atccccgtgagcttaactcagttggtagg 52798303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 5062293 - 5062322
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  5062293 catccccgtgagcttaactcagttggtagg 5062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 22718135 - 22718106
Alignment:
Q  266 catccccgtgagcttaactcagttggtagg 295  Q
    ||||||||||||||||||||||||||||||    
T  22718135 catccccgtgagcttaactcagttggtagg 22718106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 7379675 - 7379647
Alignment:
Q  265 tcatccccgtgagcttaactcagttggta 293  Q
    |||||||||||||||||||||||||||||    
T  7379675 tcatccccgtgagcttaactcagttggta 7379647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 38557296 - 38557268
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  38557296 atccccgtgagcttaactcagttggtagg 38557268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 39408763 - 39408735
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  39408763 atccccgtgagcttaactcagttggtagg 39408735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 44021071 - 44021099
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  44021071 atccccgtgagcttaactcagttggtagg 44021099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 112105 - 112133
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  112105 atccccgtgagcttaactcagttggtagg 112133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 4553620 - 4553592
Alignment:
Q  266 catccccgtgagcttaactcagttggtag 294  Q
    |||||||||||||||||||||||||||||    
T  4553620 catccccgtgagcttaactcagttggtag 4553592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 12048206 - 12048178
Alignment:
Q  265 tcatccccgtgagcttaactcagttggta 293  Q
    |||||||||||||||||||||||||||||    
T  12048206 tcatccccgtgagcttaactcagttggta 12048178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 26550491 - 26550519
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  26550491 atccccgtgagcttaactcagttggtagg 26550519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 44732630 - 44732658
Alignment:
Q  267 atccccgtgagcttaactcagttggtagg 295  Q
    |||||||||||||||||||||||||||||    
T  44732630 atccccgtgagcttaactcagttggtagg 44732658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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