View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_high_17 (Length: 286)

Name: NF20160_high_17
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_high_17
NF20160_high_17
[»] chr2 (9 HSPs)
chr2 (165-270)||(41670766-41670871)
chr2 (105-138)||(546313-546346)
chr2 (105-138)||(6666130-6666163)
chr2 (105-160)||(25994211-25994267)
chr2 (107-138)||(7497919-7497950)
chr2 (105-167)||(34261910-34261973)
chr2 (129-174)||(546264-546310)
chr2 (106-134)||(7687863-7687891)
chr2 (106-142)||(25997654-25997690)
[»] scaffold0504 (1 HSPs)
scaffold0504 (106-160)||(10640-10695)
[»] chr3 (6 HSPs)
chr3 (105-166)||(3484867-3484929)
chr3 (105-138)||(622387-622420)
chr3 (105-165)||(24748709-24748770)
chr3 (106-141)||(28300571-28300606)
chr3 (105-138)||(44334729-44334762)
chr3 (107-151)||(39932255-39932299)
[»] scaffold0111 (1 HSPs)
scaffold0111 (105-151)||(36783-36829)
[»] chr8 (7 HSPs)
chr8 (105-138)||(41304910-41304943)
chr8 (107-151)||(29910127-29910171)
chr8 (105-138)||(5642318-5642351)
chr8 (105-138)||(5644259-5644292)
chr8 (107-148)||(21273628-21273669)
chr8 (105-134)||(41005874-41005903)
chr8 (116-144)||(27055284-27055312)
[»] chr5 (6 HSPs)
chr5 (105-138)||(42825224-42825257)
chr5 (105-134)||(9277543-9277572)
chr5 (105-138)||(34952333-34952366)
chr5 (105-138)||(39840631-39840664)
chr5 (106-138)||(6865715-6865747)
chr5 (106-138)||(20125501-20125533)
[»] chr1 (5 HSPs)
chr1 (105-138)||(33422147-33422180)
chr1 (105-138)||(44112564-44112597)
chr1 (105-138)||(44641831-44641864)
chr1 (106-138)||(49589900-49589932)
chr1 (105-151)||(24775085-24775131)
[»] chr4 (2 HSPs)
chr4 (105-136)||(1688358-1688389)
chr4 (105-138)||(31147341-31147374)
[»] scaffold0238 (1 HSPs)
scaffold0238 (105-138)||(16501-16534)
[»] chr7 (4 HSPs)
chr7 (105-138)||(5724148-5724181)
chr7 (105-138)||(30391256-30391289)
chr7 (105-138)||(49089092-49089125)
chr7 (105-160)||(44817800-44817856)
[»] chr6 (1 HSPs)
chr6 (105-138)||(3800704-3800737)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 41670766 - 41670871
Alignment:
Q  165 taacttataataattaattgactgcatttctggacaccttaaaattttacaaccacactctgaatttgtgttgtactaagagggacaagcatcacaattt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41670766 taacttataataattaattgactgcatttctggacaccttaaaattttacaaccatactctgaatttgtgttgtactaagagggacaagcatcacaattt 41670865  T
Q  265 acacag 270  Q
    ||||||    
T  41670866 acacag 41670871  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 546346 - 546313
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||||    
T  546346 ggaccaatgagaagagagaaaataaaagttgtca 546313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 6666130 - 6666163
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||||    
T  6666130 ggaccaatgagaagagagaaaataaaagttgtca 6666163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 25994211 - 25994267
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtcacaaat-gttgtcaatatatcact 160  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||  ||||||||||    
T  25994211 ggaccaataagaagagagaaaatgaaagttgtcacaaatagttgtacatatatcact 25994267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 7497950 - 7497919
Alignment:
Q  107 accaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||    
T  7497950 accaatgagaagagagaaaataaaagttgtca 7497919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 34261973 - 34261910
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtcacaaat-gttgtcaatatatcactgctctaa 167  Q
    |||||||| | ||||||||||||| |||||||||||||| |||||  |||||||||| ||||||    
T  34261973 ggaccaataaaaagagagaaaatacaagttgtcacaaatggttgtacatatatcactactctaa 34261910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 546310 - 546264
Alignment:
Q  129 aaagttgtcacaaatg-ttgtcaatatatcactgctctaacttataa 174  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||    
T  546310 aaagttgtcacaaatggttgtcaatatatcactactctaagttataa 546264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 7687863 - 7687891
Alignment:
Q  106 gaccaatgagaagagagaaaataaaagtt 134  Q
    |||||||||||||||||||||||||||||    
T  7687863 gaccaatgagaagagagaaaataaaagtt 7687891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 25997690 - 25997654
Alignment:
Q  106 gaccaatgagaagagagaaaataaaagttgtcacaaa 142  Q
    ||||||| | |||||||||||||||||||||||||||    
T  25997690 gaccaataaaaagagagaaaataaaagttgtcacaaa 25997654  T

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Target: scaffold0504 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 10695 - 10640
Alignment:
Q  106 gaccaatgagaagagagaaaataaaagttgtcacaaat-gttgtcaatatatcact 160  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  10695 gaccaatgagaagagagaaaataaaagttgtcaaaaatggttgtcaatatatcact 10640  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 3484867 - 3484929
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtcacaaat-gttgtcaatatatcactgctcta 166  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||  |||||||||| |||||    
T  3484867 ggaccaatgagaagagagaaaatgaaagttgtcacaaatggttgtacatatatcactactcta 3484929  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 622420 - 622387
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||||    
T  622420 ggaccaatgagaagagagaaaataaaagttgtca 622387  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 24748709 - 24748770
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtcacaaat-gttgtcaatatatcactgctct 165  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||||  |||||||||| ||||    
T  24748709 ggaccaatgagaagagagaaaatgaaagttgtctcaaatagttgtacatatatcactactct 24748770  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 28300606 - 28300571
Alignment:
Q  106 gaccaatgagaagagagaaaataaaagttgtcacaa 141  Q
    ||||||||| ||||||||||||||||||||||||||    
T  28300606 gaccaatgaaaagagagaaaataaaagttgtcacaa 28300571  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 44334762 - 44334729
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||| ||||||    
T  44334762 ggaccaatgagaagagagaaaataaaaattgtca 44334729  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 39932255 - 39932299
Alignment:
Q  107 accaatgagaagagagaaaataaaagttgtcacaaatgttgtcaa 151  Q
    ||||||||||| ||||||||||||||||||||  || ||||||||    
T  39932255 accaatgagaaaagagaaaataaaagttgtcaacaaagttgtcaa 39932299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 36829 - 36783
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtcacaaatgttgtcaa 151  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||    
T  36829 ggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcaa 36783  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 41304943 - 41304910
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||||    
T  41304943 ggaccaatgagaagagagaaaataaaagttgtca 41304910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 29910171 - 29910127
Alignment:
Q  107 accaatgagaagagagaaaataaaagttgtcacaaatgttgtcaa 151  Q
    ||||||||||||||||||||||||||||||||  || ||||||||    
T  29910171 accaatgagaagagagaaaataaaagttgtcaacaaagttgtcaa 29910127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 5642351 - 5642318
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||| |||||||||||||||||||||||||    
T  5642351 ggaccaataagaagagagaaaataaaagttgtca 5642318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 5644292 - 5644259
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||| |||||||||||||||||||||||||    
T  5644292 ggaccaataagaagagagaaaataaaagttgtca 5644259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 21273669 - 21273628
Alignment:
Q  107 accaatgagaagagagaaaataaaagttgtcacaaatgttgt 148  Q
    |||||||| ||||||||||| ||||||||||||||| |||||    
T  21273669 accaatgaaaagagagaaaagaaaagttgtcacaaaagttgt 21273628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 41005874 - 41005903
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagtt 134  Q
    ||||||||||||||||||||||||||||||    
T  41005874 ggaccaatgagaagagagaaaataaaagtt 41005903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 27055312 - 27055284
Alignment:
Q  116 aagagagaaaataaaagttgtcacaaatg 144  Q
    |||||||||||||||||||||||||||||    
T  27055312 aagagagaaaataaaagttgtcacaaatg 27055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 42825224 - 42825257
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||||    
T  42825224 ggaccaatgagaagagagaaaataaaagttgtca 42825257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 9277572 - 9277543
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagtt 134  Q
    ||||||||||||||||||||||||||||||    
T  9277572 ggaccaatgagaagagagaaaataaaagtt 9277543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 34952366 - 34952333
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||| |||||||||||||||||||||||||    
T  34952366 ggaccaataagaagagagaaaataaaagttgtca 34952333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 39840664 - 39840631
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||||||||||| |||||||||||||||||    
T  39840664 ggaccaatgagaagagggaaaataaaagttgtca 39840631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 6865747 - 6865715
Alignment:
Q  106 gaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||| |||||||||||||||||||||||    
T  6865747 gaccaatgaaaagagagaaaataaaagttgtca 6865715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 20125501 - 20125533
Alignment:
Q  106 gaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||||||||||||||||| ||||||||||    
T  20125501 gaccaatgagaagagagaaaatgaaagttgtca 20125533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 33422180 - 33422147
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||||    
T  33422180 ggaccaatgagaagagagaaaataaaagttgtca 33422147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 44112564 - 44112597
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||||    
T  44112564 ggaccaatgagaagagagaaaataaaagttgtca 44112597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 44641864 - 44641831
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||||||||||||||    
T  44641864 ggaccaatgagaagagagaaaataaaagttgtca 44641831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 49589932 - 49589900
Alignment:
Q  106 gaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||||||||||||||||||||||||||||    
T  49589932 gaccaatgagaagagagaaaataaaagttgtca 49589900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 24775085 - 24775131
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtcacaaatgttgtcaa 151  Q
    ||||||||||||||||||||||||||| ||||||  || ||||||||    
T  24775085 ggaccaatgagaagagagaaaataaaaattgtcaacaaagttgtcaa 24775131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 136
Target Start/End: Complemental strand, 1688389 - 1688358
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgt 136  Q
    ||||||||||||||||||||||||||||||||    
T  1688389 ggaccaatgagaagagagaaaataaaagttgt 1688358  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 31147341 - 31147374
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||| |||||||||||||||||||||||||    
T  31147341 ggaccaataagaagagagaaaataaaagttgtca 31147374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 16501 - 16534
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||| ||||||||||||||||||||    
T  16501 ggaccaatgagaatagagaaaataaaagttgtca 16534  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 5724148 - 5724181
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||||| |||||||||||||||||||||||    
T  5724148 ggaccaatgaaaagagagaaaataaaagttgtca 5724181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 30391256 - 30391289
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    |||||||||||||||||| |||||||||||||||    
T  30391256 ggaccaatgagaagagagtaaataaaagttgtca 30391289  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 49089125 - 49089092
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||| ||||||||||    
T  49089125 ggaccaatgagaagagagaaaatgaaagttgtca 49089092  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 44817800 - 44817856
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtcacaaatg-ttgtcaatatatcact 160  Q
    |||||||||||||||| |||||| ||||||||| |||||| ||||  ||||||||||    
T  44817800 ggaccaatgagaagagcgaaaatgaaagttgtctcaaatgattgtgtatatatcact 44817856  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 3800704 - 3800737
Alignment:
Q  105 ggaccaatgagaagagagaaaataaaagttgtca 138  Q
    ||||||||||||||||||||||| ||||||||||    
T  3800704 ggaccaatgagaagagagaaaatgaaagttgtca 3800737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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