View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_high_18 (Length: 274)
Name: NF20160_high_18
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_high_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 38 - 274
Target Start/End: Complemental strand, 41671082 - 41670848
Alignment:
| Q |
38 |
ctttagttttgaagattatttgactggtcaaaaatataaactttgcaatcacatgcgtgtaagtaacattatcattggtaaacagaattagtgtaaatag |
137 |
Q |
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| T |
41671082 |
ctttagttttgaagattatttgactggtcaaaaatataaactttgcaatcacatgcgtgtaagtaacattatcattggtaaacaaaattagtgtaaatag |
41670983 |
T |
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| Q |
138 |
tagtacatatatattcatcaattgtttttgcttagttgggcacataaatttgagtcaatgtgaaacaatctttttgagggcttgactagcttggacgtaa |
237 |
Q |
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| T |
41670982 |
tagtacatatat--tcatcaattgtttttgcttagttgggcacataaatttgagtcaatgtgaaacaatctttttgagggcttgactagcttggacgtaa |
41670885 |
T |
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| Q |
238 |
gtaaaatgcgaaactgtgtaaattgtgatgcttgtcc |
274 |
Q |
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| T |
41670884 |
gtaaaatgcgaaactgtgtaaattgtgatgcttgtcc |
41670848 |
T |
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