View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_high_20 (Length: 253)

Name: NF20160_high_20
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_high_20
NF20160_high_20
[»] chr7 (15 HSPs)
chr7 (10-253)||(4652280-4652523)
chr7 (21-253)||(4665695-4665927)
chr7 (21-253)||(4629669-4629901)
chr7 (18-238)||(4671415-4671635)
chr7 (18-247)||(4660567-4660796)
chr7 (18-226)||(4635644-4635852)
chr7 (18-226)||(4642491-4642699)
chr7 (18-155)||(4784956-4785093)
chr7 (18-155)||(4817385-4817522)
chr7 (108-246)||(4676792-4676930)
chr7 (57-143)||(4713226-4713312)
chr7 (18-73)||(4676945-4677000)
chr7 (48-131)||(4862771-4862854)
chr7 (72-194)||(4698365-4698487)
chr7 (57-126)||(4854596-4854665)
[»] chr4 (1 HSPs)
chr4 (18-239)||(18926860-18927081)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 4652523 - 4652280
Alignment:
Q  10 gtagcatagggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4652523 gtagcctagggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtg 4652424  T
Q  110 tgctagaccacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaata 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4652423 tgctagaccacctttggttcgtgatttggataagaatacagcaagtctagtttgttggtttaaaaaatgctacgatgaaggtgtggcaattgaacaaata 4652324  T
Q  210 gtggatccattcctaaggggttctatcacagaggagtgcttgaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4652323 gtggatccattcctaaggggttctatcacagaggagtgcttgaa 4652280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 4665927 - 4665695
Alignment:
Q  21 tatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccac 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4665927 tatttggatcccgaatattatatgctccaaaggctaactctaaaatctgatgtgtactcgttcggtgtggtgcttcttgaggtgttgtgtgctagaccac 4665828  T
Q  121 ctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccatt 220  Q
    |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  4665827 ctttggttcgtgatttggataagaatactgctagtctagtttgttggtttaaaaaatgttacgatgaaggtgtggcaattgaacaaatagttgatccatt 4665728  T
Q  221 cctaaggggttctatcacagaggagtgcttgaa 253  Q
    | |||||| |||||||||||| |||| ||||||    
T  4665727 cgtaagggattctatcacagatgagtacttgaa 4665695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 4629901 - 4629669
Alignment:
Q  21 tatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccac 120  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||    
T  4629901 tatttggatcccgaatactatatgctccaaaggctaactctaaaatctgacgtgtactcgtttggtgtggtgcttcttgaggtgttgtgtgctagaccac 4629802  T
Q  121 ctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatccatt 220  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| |  ||||||||||||| |||||||||||||| ||||||||    
T  4629801 ctttggttcgtgatttggataagaatacagctagtctagtttgttggtttcaaaaatgccataatgaaggtgtggcgattgaacaaatagtcgatccatt 4629702  T
Q  221 cctaaggggttctatcacagaggagtgcttgaa 253  Q
    | |||||| |||||||||||  |||||||||||    
T  4629701 cttaagggattctatcacagttgagtgcttgaa 4629669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4671635 - 4671415
Alignment:
Q  18 gggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagac 117  Q
    |||||||| ||||| || || |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |    
T  4671635 gggtatttagatcctgagtactatatgttccaaaggctaactctaaaatcagatgtgtactcattcggtgtggtacttcttgaagtgttgtgtgctaggc 4671536  T
Q  118 cacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatcc 217  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||| |    
T  4671535 cacctttggttcgcgatttggataagaatacagctagtctagtttgttggtttaaaagatgctacgatgaaggtgtggcgattgaacaaatactggattc 4671436  T
Q  218 attcctaaggggttctatcac 238  Q
    ||||||||||| |||||||||    
T  4671435 attcctaagggattctatcac 4671415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 4660796 - 4660567
Alignment:
Q  18 gggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagac 117  Q
    ||||||||||||||  |||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |    
T  4660796 gggtatttggatccccaatactatatgctccaaaggttaactctaaaatctgaagtgtactcgttcggtgtggtgcttcttgaggtgttgtgtgctaggc 4660697  T
Q  118 cacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatcc 217  Q
    |||| |||||||| |||||||||||||||||| | ||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  4660696 caccattggttcgcgatttggataagaatacaactagtctagtttgttggtttaaaagatgctatgatgaaggtgtggcgattgaacaaatagtggatcc 4660597  T
Q  218 attcctaaggggttctatcacagaggagtg 247  Q
    || |||||  | ||||||||| || |||||    
T  4660596 atccctaaaagattctatcacggatgagtg 4660567  T

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Target: chr7; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 4635852 - 4635644
Alignment:
Q  18 gggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagac 117  Q
    |||||||| ||||| || || |||||| |||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |    
T  4635852 gggtatttagatcctgagtactatatgttccaaaggcttactcttaaatcagacgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctaggc 4635753  T
Q  118 cacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatcc 217  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |||| ||||||||| ||||||||||| ||||||||||| ||||||||    
T  4635752 cacctttggttcgcgatttggataagaatacagctagtctagtttgttggttcaaaagatgctacgaagaaggtgtggcgattgaacaaatggtggatcc 4635653  T
Q  218 attcctaag 226  Q
    |||||||||    
T  4635652 attcctaag 4635644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 4642699 - 4642491
Alignment:
Q  18 gggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagac 117  Q
    |||||||| ||||| || || |||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| |    
T  4642699 gggtatttagatcctgagtactatatgttccaaaggctaactctaaaatcagatgtgtactcgttcggtgtggtacttcttgaagtgttgtgtgctaggc 4642600  T
Q  118 cacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatcc 217  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||| ||| |||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  4642599 cacctttggttcgtaatttggataagaatactgctagtctagtttgttggttcaaaagatgctacgaagaaggtgtggcgattgaacaaatagtggatcc 4642500  T
Q  218 attcctaag 226  Q
    |||||||||    
T  4642499 attcctaag 4642491  T

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Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 4784956 - 4785093
Alignment:
Q  18 gggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagac 117  Q
    |||||||||||||||||||| || ||||  |||||| | |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  4784956 gggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtgttgtgcttcttgaggtgttgtgtgcgagac 4785055  T
Q  118 cacctttggttcgtgatttggataagaatacagcaagt 155  Q
    | || |||||||||  |||||||||||| | |||||||    
T  4785056 ccccgttggttcgttctttggataagaaaaaagcaagt 4785093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 4817385 - 4817522
Alignment:
Q  18 gggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagac 117  Q
    |||||||||||||||||||| || ||||  |||||  | |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  4817385 gggtatttggatccagaatactacatgcgacaaagattgactctaaagtctgatgtgtactctttcggtgttgtgcttcttgaggtgttgtgtgcgagac 4817484  T
Q  118 cacctttggttcgtgatttggataagaatacagcaagt 155  Q
    | || ||||||||   |||||||||||| | |||||||    
T  4817485 ccccgttggttcggtctttggataagaaaaaagcaagt 4817522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 4676930 - 4676792
Alignment:
Q  108 tgtgctagaccacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaa 207  Q
    |||||||| || ||||||||||| ||||| || ||||| ||  | ||| ||||||||| |||| ||| ||| || | ||||  |||||||||| ||||||    
T  4676930 tgtgctaggccgcctttggttcgcgatttagacaagaagacgactagtttagtttgttggtttcaaagatgttagggtgaatatgtggcaattaaacaaa 4676831  T
Q  208 tagtggatccattcctaaggggttctatcacagaggagt 246  Q
    ||||||||||||||||||||  |||||||| ||||||||    
T  4676830 tagtggatccattcctaaggaattctatcatagaggagt 4676792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 4713226 - 4713312
Alignment:
Q  57 actctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag 143  Q
    ||||| || ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| || |  ||||||||||    
T  4713226 actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag 4713312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 4677000 - 4676945
Alignment:
Q  18 gggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgt 73  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  4677000 gggtatttggatcctgaatattacatgctccaaaggctaactctaaaatcggatgt 4676945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 4862854 - 4862771
Alignment:
Q  48 caaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgt 131  Q
    |||||| | ||||||||||| || ||||| || |||||||| || |||||||||||||||||||| |||||||| |||||||||    
T  4862854 caaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgt 4862771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 4698365 - 4698487
Alignment:
Q  72 gtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgttta 171  Q
    |||||||| || ||||| |||||||||||||| |||||||| ||||||||||||||||||  |||||| ||||| | ||| ||| |||| | || |||      
T  4698365 gtgtactcttttggtgttgtgcttcttgaggtattgtgtgcgagaccacctttggttcgttctttggaaaagaaaaaagcgagtttagtcttttggttcc 4698464  T
Q  172 aaaaatgctacgatgaaggtgtg 194  Q
    ||| ||| ||| |||||||||||    
T  4698465 aaagatgttacaatgaaggtgtg 4698487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 4854596 - 4854665
Alignment:
Q  57 actctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttgg 126  Q
    |||||||| |||||||||||||| |||||||  || ||||||||| |||||||||| |||||||||||||    
T  4854596 actctaaagtctgatgtgtactctttcggtgatgtacttcttgagatgttgtgtgcgagaccacctttgg 4854665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 18926860 - 18927081
Alignment:
Q  18 gggtatttggatccagaatattatatgctccaaaggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagac 117  Q
    |||||||| ||||| || || ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |    
T  18926860 gggtatttagatcctgagtactatatgctccaaaggcttaccctaaaatctgacgtgtactcattcggtgtggtgcttcttgaggtattgtgtgcaaggc 18926959  T
Q  118 cacctttggttcgtgatttggataagaatacagcaagtctagtttgtttgtttaaaaaatgctacgatgaaggtgtggcaattgaacaaatagtggatcc 217  Q
    ||||||||||||| ||||| |||||||| || || ||||||||||||| |||| ||| ||| ||||||||||||||  ||||| |||| || || |||||    
T  18926960 cacctttggttcgcgatttagataagaagacggctagtctagtttgttggtttcaaagatgttacgatgaaggtgttccaattaaacagatcgtagatcc 18927059  T
Q  218 attcctaaggggttctatcaca 239  Q
    |||||| |||| ||||||||||    
T  18927060 attcctgagggattctatcaca 18927081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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