View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_high_27 (Length: 229)
Name: NF20160_high_27
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 3674789 - 3674999
Alignment:
| Q |
4 |
aataatatagcaaatgattttagaattttgtaaaactttatatagacgagctacatgaacttaacatctaatggtcaaatttttcttnnnnnnnnnnnnn |
103 |
Q |
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| T |
3674789 |
aataaaatagcaaatgattttagaattttgtaaaactttatatagacgagctacatgaacttaacaactaatggtcaaatttttctttcaaaaaaaa--- |
3674885 |
T |
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| Q |
104 |
ntctaatgatcgagttttaaaaatatgcatcgagtgaaacgatattgaacgatataacattgttgcaac---attatattagtgtaatttgatacctcct |
200 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
3674886 |
-tctaatgatcaagttttaaaaatatgcatcgggtgaaacgatattgagcgatataacattgttgcaacattattatattagtgtaatttgattcctcct |
3674984 |
T |
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| Q |
201 |
tatatactaacattg |
215 |
Q |
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|||||||| |||||| |
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| T |
3674985 |
tatatactgacattg |
3674999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 2961725 - 2961809
Alignment:
| Q |
122 |
aaaaatatgcatcgagtgaaacgatattgaacgatataacattgttgcaacattatattagtgtaatttgatacctccttatata |
206 |
Q |
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| T |
2961725 |
aaaaatatgtatcgagtaaaacgatattaagcggtgtaaaattggtgtaatattacattagtgtaatttgatccctccttttata |
2961809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 15293160 - 15293214
Alignment:
| Q |
122 |
aaaaatatgcatcgagtgaaacgatattgaacgatataacattgttgcaacatta |
176 |
Q |
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| T |
15293160 |
aaaaatatgcatcgagtaaaacgatattgagcggtgtaacattggtgtaacatta |
15293214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 37517119 - 37517077
Alignment:
| Q |
122 |
aaaaatatgcatcgagtgaaacgatattgaacgatataacatt |
164 |
Q |
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| T |
37517119 |
aaaaatatgcatcgagtaaaacgatattgaacggtgtaacatt |
37517077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 13837259 - 13837202
Alignment:
| Q |
108 |
aatgatcgagttttaaaaatatgcatcgagtgaaacgatattgaacgatataacattg |
165 |
Q |
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| T |
13837259 |
aatgatcaaatttgaaaaatatgcatcgagtaaaatgatattgaacggtgtaacattg |
13837202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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