View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_high_3 (Length: 478)
Name: NF20160_high_3
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 40483435 - 40483002
Alignment:
| Q |
1 |
ttttgctactatcgttttcctatggtcgtgtacgcattaatatatatgttatatatgagggagtcttttgtgatggattgtccacaaaagattttctttt |
100 |
Q |
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| T |
40483435 |
ttttgctactatcgttttcctatggtcgtgtacgcattaatatatatgttatatatgagggagtcttttgtgatggattgtcaacaaaagattttttttt |
40483336 |
T |
|
| Q |
101 |
gtatctgttagtgtgatgtttgtttggctttgagtatggaacattaactgtggtattcagtggttcactgttctatggtgtgttgcacgtgggggcaaag |
200 |
Q |
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| T |
40483335 |
gtatctgttagtgtgatgtttgtttggctttgagtatggaacattaactgtggtattcagtggttcgctgttctatggtgtgttgcacgtgggggtaaag |
40483236 |
T |
|
| Q |
201 |
aaagacattttagtgtgaattggaaataacaagagggtctatgtccc---tactctctatgataagagcattggtggctagtttagttataaacttataa |
297 |
Q |
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| T |
40483235 |
aaagacattttagtgtgaattggaaataacaagagggtccatgtccctactactctatatgataagagcattggtggctagtttagttataaacttataa |
40483136 |
T |
|
| Q |
298 |
tagtagttagttaggtttggtgtgtaagattgtgtttttccatactttttgtacttgtcgttatttctattttgattctttaccattccttatgcttatt |
397 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40483135 |
tag----tagttaggtttggtgtgtaagattgtgtttttccatactctttgtacttgtcgttatttctatcttgattcttgaccattcctta-------- |
40483048 |
T |
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| Q |
398 |
tatatactacttcggtttgccttttcaactagcagcaatgcatgtgacg |
446 |
Q |
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| T |
40483047 |
tatatactacttcggtttgccttttcaac---gagcaatgcatgtgacg |
40483002 |
T |
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