View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20160_high_4 (Length: 476)
Name: NF20160_high_4
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_high_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 2 - 459
Target Start/End: Complemental strand, 11104557 - 11104100
Alignment:
| Q |
2 |
gagagtgtaactaaatctgtagtgttgagaccttgaacaagaaatgaagctttaagttgatccaatgtggagaagggtccaggaaggttttgatttgcaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11104557 |
gagagtgtaactaaatctgtagtgttgagaccttgaacaagaaatgaagctttaagttgatccaatgtggagaagggtccgggaaggttttgatttgcaa |
11104458 |
T |
|
| Q |
102 |
gagttatgttggcagttaagctatcccttcttcccaatggaattggccatgagggacctcctccctgttcatagatcaatatatattagatgattttaag |
201 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11104457 |
gagttatgttggcggttaagctatcccttcttcccaatggaattggccatgagggacctcctccctgttcatagatcaatatatattagatgattttaag |
11104358 |
T |
|
| Q |
202 |
atggatatttgagaagcaaatattactagtgaccatataaagtttatgaaattaaaaacataccagaatagaagatacttcagctgcaatagtaagaata |
301 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11104357 |
atggatatttgagaagcaaaaattactagtgaccatataaagtttatgaaattaaaaacataccagaatagaagatacttcagctgcaatagtaagaata |
11104258 |
T |
|
| Q |
302 |
tcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttctgtttggaaatgcat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11104257 |
tcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgattttattcacaacatccaaacgctttaatgagtttctgtttggaaatgcat |
11104158 |
T |
|
| Q |
402 |
cttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11104157 |
cttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg |
11104100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 256 - 459
Target Start/End: Complemental strand, 11095844 - 11095641
Alignment:
| Q |
256 |
aaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttga |
355 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |
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|
| T |
11095844 |
aaaacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaacagtggctggacattcattttcaactgctgtcttgatttgg |
11095745 |
T |
|
| Q |
356 |
ttcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagc |
455 |
Q |
| |
|
|| |||||||||||||| |||||||||||| ||||||||| ||||||||| ||||| || || |||| |||||||||||||||||||||||||||||| | |
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|
| T |
11095744 |
tttacaacatccaaaccccttaatgagtttatgtttggaagtgcatcttgctcacttactatggtattagtgttgttcaacaaaactgatccatcacaac |
11095645 |
T |
|
| Q |
456 |
cctg |
459 |
Q |
| |
|
|||| |
|
|
| T |
11095644 |
cctg |
11095641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 11097534 - 11097351
Alignment:
| Q |
2 |
gagagtgtaactaaatctgtagtgttgagaccttgaacaagaaatgaagctttaagttgatccaatgtggagaagggtccaggaaggttttgatttgcaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | ||||||||||||||||||| |
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|
| T |
11097534 |
gagagtgtaactaaatctgtagtgttgagaccttgaacaagaaatgcagctttaagttgatccaatgtgaaaaagggtgctggaaggttttgatttgcaa |
11097435 |
T |
|
| Q |
102 |
gagttatgttggcagttaagctatcccttcttcccaatggaattggccatgagggacctcctccctgttcatagatcaatatat |
185 |
Q |
| |
|
| | | ||| || ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
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|
| T |
11097434 |
gggcttggtttgctgttaaactatcccttcttcccaatggaatttgccatgagggacctcctccctgttcataaaccaatatat |
11097351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 261 - 459
Target Start/End: Complemental strand, 11145444 - 11145246
Alignment:
| Q |
261 |
ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcac |
360 |
Q |
| |
|
||||||| |||| |||| |||||| |||| || ||||||||||||||||||||| |||||||| || | | ||| |||||||| |||||||||||||| |
|
|
| T |
11145444 |
ataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcac |
11145345 |
T |
|
| Q |
361 |
aacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg |
459 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
11145344 |
aacatccaaacctctcaatgagtttctgtttggaaaagcatcttgttcactgacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctg |
11145246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 11149344 - 11149180
Alignment:
| Q |
295 |
aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttctgtttgga |
394 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| | | ||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11149344 |
aagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctcttaatgagtttctgtttgga |
11149245 |
T |
|
| Q |
395 |
aatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg |
459 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||| ||||| |
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|
| T |
11149244 |
aaagcatcttgttcactcacaacggtatcagttttgttcagtaaaactgatgcatcacaaccctg |
11149180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 11137111 - 11136947
Alignment:
| Q |
295 |
aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttctgtttgga |
394 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | | ||| |||||||| |||||||||||||||||||||||||||| || ||||| | ||||| |
|
|
| T |
11137111 |
aagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagttgatatttggg |
11137012 |
T |
|
| Q |
395 |
aatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg |
459 |
Q |
| |
|
|| || ||||||||||||||||| |||||||| |||||||| ||||||||| ||||||| ||||| |
|
|
| T |
11137011 |
aaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgatgcatcacaaccctg |
11136947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 11171372 - 11171246
Alignment:
| Q |
258 |
aacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgatt |
357 |
Q |
| |
|
|||||||||||| ||| || | |||||| |||| || ||||||||||||||||||||||||||||||||| | | ||| |||||||| ||||||||||| |
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|
| T |
11171372 |
aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgatt |
11171273 |
T |
|
| Q |
358 |
cacaacatccaaacctcttaatgagtt |
384 |
Q |
| |
|
||||||||| |||||||||| |||||| |
|
|
| T |
11171272 |
cacaacatctaaacctcttattgagtt |
11171246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 262 - 459
Target Start/End: Complemental strand, 11110292 - 11110095
Alignment:
| Q |
262 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca |
361 |
Q |
| |
|
|||||||| |||||||| | ||| |||| ||||||||||||||||||||||| | ||||| || ||| ||| ||| |||||||||||||| | | |
|
|
| T |
11110292 |
taccagaacagaagatattccagacgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgata |
11110193 |
T |
|
| Q |
362 |
acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg |
459 |
Q |
| |
|
|||||||| |||||||| ||||| | |||||||| |||||||||||||||||||| || | ||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
11110192 |
acatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctg |
11110095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 461
Target Start/End: Complemental strand, 11118296 - 11118097
Alignment:
| Q |
262 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca |
361 |
Q |
| |
|
|||||||| ||||||||| ||||||||| || |||||||||||||||||||| | |||||||| ||| ||| || | || || || ||||| | | |
|
|
| T |
11118296 |
taccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaactttattaggacaaactttttccacctcagttttaatctgattgata |
11118197 |
T |
|
| Q |
362 |
acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgat |
461 |
Q |
| |
|
|||||||| | |||||| |||||| | |||||| ||||||||||||||| |||| ||| ||| || ||||||||||||||| ||||||| ||||||| |
|
|
| T |
11118196 |
acatccaatcttcttaaggagtttatatttggaccagcatcttgttcactcgcaatagtagaagttttattcaacaaaactgatgcatcacaaccctgat |
11118097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 459
Target Start/End: Complemental strand, 11155760 - 11155563
Alignment:
| Q |
262 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca |
361 |
Q |
| |
|
|||||||| ||| ||| ||| ||| |||| || ||||||||||||||||||||| ||||||||||| | ||| | || || ||||| ||||| ||| |
|
|
| T |
11155760 |
taccagaacagaggatgcttgagcagcaagagcaagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgatttaca |
11155661 |
T |
|
| Q |
362 |
acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg |
459 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||| || | |||||| || || || ||| |||| |||||||||||||| || ||||||| ||||| |
|
|
| T |
11155660 |
acatccaaacctcttaaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctg |
11155563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 458
Target Start/End: Original strand, 11191956 - 11192067
Alignment:
| Q |
347 |
ttgatttgattcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatc |
446 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||| || || |||| |||||||| || ||||||| || |||||||| | |||| |
|
|
| T |
11191956 |
ttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcacgatagtatcagagtcattcaacaagagtgatg |
11192055 |
T |
|
| Q |
447 |
catcacagccct |
458 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11192056 |
catcacaaccct |
11192067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 11177375 - 11177309
Alignment:
| Q |
261 |
ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca |
327 |
Q |
| |
|
|||||||| |||||||| |||||| | || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
11177375 |
ataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggaca |
11177309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 377
Target Start/End: Original strand, 10794028 - 10794110
Alignment:
| Q |
295 |
aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctctta |
377 |
Q |
| |
|
||||||||||||||||||||| || ||||| || ||| ||| || |||||||||| |||||||||| | ||||||||||| |
|
|
| T |
10794028 |
aagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgattcacaacttgcaaacctctta |
10794110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 453
Target Start/End: Complemental strand, 11200217 - 11200121
Alignment:
| Q |
357 |
tcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcaca |
453 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||||| || | |||||| || || ||||| | |||||||||| |||||| ||| ||||||| |
|
|
| T |
11200217 |
tcacaacatccaaacctcttatggagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatcaca |
11200121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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