View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_high_7 (Length: 422)

Name: NF20160_high_7
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_high_7
NF20160_high_7
[»] chr7 (18 HSPs)
chr7 (1-404)||(11820337-11820740)
chr7 (1-394)||(11809096-11809489)
chr7 (18-257)||(11810870-11811109)
chr7 (50-404)||(27993901-27994260)
chr7 (1-404)||(11814208-11814610)
chr7 (1-118)||(11812604-11812720)
chr7 (13-137)||(11816926-11817050)
chr7 (17-257)||(11815474-11815706)
chr7 (280-402)||(11816744-11816866)
chr7 (50-256)||(9729832-9730035)
chr7 (56-237)||(48598314-48598495)
chr7 (281-361)||(32716354-32716434)
chr7 (349-394)||(11812398-11812443)
chr7 (210-248)||(11812533-11812571)
chr7 (50-192)||(32716533-32716676)
chr7 (323-404)||(44572331-44572411)
chr7 (301-404)||(11815328-11815431)
chr7 (376-404)||(27616658-27616686)
[»] chr1 (13 HSPs)
chr1 (34-239)||(3387638-3387844)
chr1 (13-254)||(16426387-16426637)
chr1 (50-257)||(50127116-50127323)
chr1 (35-256)||(3954934-3955155)
chr1 (50-216)||(48632578-48632746)
chr1 (50-150)||(9149060-9149161)
chr1 (280-399)||(16426664-16426783)
chr1 (50-99)||(125176-125225)
chr1 (283-404)||(3387883-3388003)
chr1 (50-150)||(7021634-7021735)
chr1 (51-150)||(18476506-18476607)
chr1 (50-150)||(23431866-23431967)
chr1 (159-216)||(126360-126419)
[»] chr2 (19 HSPs)
chr2 (50-256)||(17651258-17651465)
chr2 (168-402)||(41849126-41849358)
chr2 (55-212)||(44649966-44650126)
chr2 (1-99)||(41848962-41849067)
chr2 (69-254)||(4748037-4748224)
chr2 (51-150)||(9929631-9929731)
chr2 (173-257)||(18724691-18724775)
chr2 (51-150)||(26576061-26576161)
chr2 (51-150)||(32200885-32200985)
chr2 (68-150)||(13037325-13037408)
chr2 (303-404)||(38783569-38783670)
chr2 (281-404)||(17651490-17651611)
chr2 (51-147)||(34409647-34409743)
chr2 (39-99)||(16661291-16661351)
chr2 (304-396)||(34409391-34409482)
chr2 (51-148)||(27004035-27004133)
chr2 (40-149)||(38783673-38783783)
chr2 (304-404)||(26576325-26576424)
chr2 (160-216)||(34409577-34409633)
[»] chr8 (17 HSPs)
chr8 (34-239)||(18393524-18393730)
chr8 (34-404)||(13097427-13097794)
chr8 (40-224)||(27401812-27401997)
chr8 (63-254)||(2889699-2889884)
chr8 (78-251)||(1226083-1226258)
chr8 (60-254)||(2875344-2875532)
chr8 (301-404)||(2874902-2875005)
chr8 (62-254)||(3159842-3160028)
chr8 (68-150)||(3145256-3145339)
chr8 (1-99)||(28867231-28867336)
chr8 (60-150)||(2796200-2796294)
chr8 (336-401)||(2889545-2889610)
chr8 (7-99)||(28869800-28869899)
chr8 (344-404)||(18393365-18393425)
chr8 (50-150)||(15850518-15850619)
chr8 (336-392)||(2797264-2797320)
chr8 (71-150)||(28421061-28421141)
[»] scaffold0012 (1 HSPs)
scaffold0012 (34-257)||(209174-209396)
[»] scaffold1723 (2 HSPs)
scaffold1723 (1-256)||(294-555)
scaffold1723 (334-404)||(191-260)
[»] chr6 (15 HSPs)
chr6 (50-230)||(33234836-33235014)
chr6 (1-252)||(2602033-2602289)
chr6 (170-402)||(17261714-17261946)
chr6 (51-216)||(12843903-12844069)
chr6 (317-402)||(33234711-33234796)
chr6 (160-215)||(57106-57162)
chr6 (51-150)||(34708928-34709028)
chr6 (283-404)||(34013722-34013842)
chr6 (50-98)||(6821025-6821073)
chr6 (304-404)||(14494239-14494339)
chr6 (280-395)||(12844142-12844256)
chr6 (304-403)||(19294591-19294689)
chr6 (51-150)||(19294385-19294482)
chr6 (283-404)||(34011008-34011128)
chr6 (51-150)||(17540017-17540117)
[»] chr3 (5 HSPs)
chr3 (167-257)||(42718554-42718643)
chr3 (50-150)||(21408922-21409023)
chr3 (50-150)||(11410682-11410783)
chr3 (304-353)||(17715694-17715742)
chr3 (304-353)||(19016923-19016971)
[»] chr5 (4 HSPs)
chr5 (50-191)||(32676657-32676797)
chr5 (68-212)||(38989252-38989395)
chr5 (39-99)||(4112005-4112065)
chr5 (50-115)||(40837805-40837871)
[»] chr4 (10 HSPs)
chr4 (50-216)||(2641136-2641307)
chr4 (71-146)||(54305676-54305752)
chr4 (68-254)||(44507705-44507893)
chr4 (39-93)||(32593781-32593835)
chr4 (304-401)||(40288958-40289054)
chr4 (200-247)||(32593973-32594018)
chr4 (344-404)||(32595251-32595311)
chr4 (71-150)||(40289214-40289294)
chr4 (50-150)||(17732772-17732874)
chr4 (304-404)||(45612238-45612337)
[»] scaffold0325 (1 HSPs)
scaffold0325 (50-99)||(12877-12926)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 11820740 - 11820337
Alignment:
Q  1 acaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||     
T  11820740 acaccgacaccactacctatatattaatttatttatcaaaattgcgaagcaaaatacatacatatgcatctaacttgagcaatttatttcattcaaaaag 11820641  T
Q  101 ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgt 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  11820640 ttctatgacaacatacaatagcatttgagctttatttatttatctactattaaaaattttaaaaatgttgtaatcatctttaatgtctataacccttcgt 11820541  T
Q  201 tgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagagnnnnnnnntaagacannnnnnngagttgtctgacacacctcaa 300  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||        |||||||       |||||||||||||||||||||    
T  11820540 tgatcaacatttctcacacatctttaactcttgaatctactgtgtgtggaagcagagaaaaaaaataagacattattttgagttgtctgacacacctcaa 11820441  T
Q  301 ataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11820440 ataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtg 11820341  T
Q  401 tcat 404  Q
    ||||    
T  11820340 tcat 11820337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 11809489 - 11809096
Alignment:
Q  1 acaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat 100  Q
    ||||||||||  ||||||||||||||||||||||||| |||||  |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  11809489 acaccgacactgctacctatatattaatttatttatctaaatttagaagcaaaatacatacatatgcttctaacttgagcaatttatttcattaaaaaat 11809390  T
Q  101 ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgt 200  Q
    || ||| |||||||||||||| |||||  |||||||  || ||||||  |       |||||||| ||||||||||  |||||||||||| |||| || |    
T  11809389 ttatataacaagatacaatagtatttggcctttattacttcatctaccgtcaaaaaatttaaaaaggttgtaatcaaatttaatgtctatgacccctcat 11809290  T
Q  201 tgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagagnnnnnnnntaagacannnnnnngagttgtctgacacacctcaa 300  Q
    |||| || |  | ||||    ||||||||| |||||||||||||||| |||||| ||        | | |||       ||||||||||||||||||||     
T  11809289 tgataaaaaaatttcactaggctttaactcttgaatctactgtgtgtagaagcacagaaaaaaattcatacatttgtttgagttgtctgacacacctcat 11809190  T
Q  301 ataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgta 394  Q
    ||||||||||||||   || ||||||||| |||| || || ||||||||||||||||||||||| ||||  ||||||||| ||||| |||||||    
T  11809189 ataagtgttatataagcgttagacaccgaacctaggaatgtcaaagtaaagaagaaaataacttgtttatgacacttgtccgacacatgtcgta 11809096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 11811109 - 11810870
Alignment:
Q  18 tatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaagataca 117  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| | | ||||||||||    
T  11811109 tatataataatttatttatcaaaattgagaagcaaaatacatacatatgcctctaacttgagcaatttatttcattaaaaaatttatctaacaagataca 11811010  T
Q  118 atagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcac 217  Q
    |||  |||||| ||||||| ||||||||||| |       |||||||| |  || ||||| ||| |||||||||| || ||| |||||||||||||||||    
T  11811009 ataatatttgacctttattaatttatctactgtcataaaatttaaaaacgccgttatcattttttatgtctataaaccctcgctgatcaacatttctcac 11810910  T
Q  218 atatctttaactcctgaatctactgtgtgtggaagcagag 257  Q
    |   ||||||||| |||||||||| ||||||||| |||||    
T  11810909 aaggctttaactcttgaatctactttgtgtggaaacagag 11810870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 50 - 404
Target Start/End: Original strand, 27993901 - 27994260
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaa-aaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||||||||||| || ||||||||||||||||||||||| || ||| |||||| |||||||||||||||| |||| ||||||||||  ||||||     
T  27993901 caaaatacatacatatgcatttaacttgagcaatttatttcattaaataaagttctataacaagatacaatagcaattgatctttatttatccatctacc 27994000  T
Q  149 atnnnnnnntttaaaaatg---ttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgt 245  Q
    ||       ||||||||||   ||||||| | ||||||||||||||| || || ||||| || |||||||||| ||||||||||| ||||||||||||||    
T  27994001 atcgaaaaatttaaaaatgcatttgtaataaactttaatgtctataaaccctccttgataaatatttctcacacatctttaactcttgaatctactgtgt 27994100  T
Q  246 gtggaagcagagnnnnnnnnta---agacannnnnnngagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgac 342  Q
    |  |||||||||         |   ||| |        |||||||  ||| |||||| ||||||||||||||| | |||||||||| ||| || ||||      
T  27994101 g--gaagcagaggaaaaaaaaacccagatatttatctaagttgtccaacagacctcatataagtgttatataggtatcagacaccggtccaaaaagtgtt 27994198  T
Q  343 aaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtcat 404  Q
     ||||||||||||||| ||||||||||  |||||||| |||||| |||||||||||||||||    
T  27994199 gaagtaaagaagaaaacaacttatttatgacacttgtttgacacatgtcgtacgagtgtcat 27994260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 11814610 - 11814208
Alignment:
Q  1 acaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat 100  Q
    ||||||||||   |||||||||||||| | ||||||| |||||| ||||||||||||||| ||||| ||||||  |||||||||||||||||  ||| ||    
T  11814610 acaccgacactgttacctatatattaagtgatttatctaaattgagaagcaaaatacataaatatgcatctaatatgagcaatttatttcatgaaaatat 11814511  T
Q  101 ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgt 200  Q
    |||  | ||| ||||||| |  |||||| || ||||  ||||| ||||||        ||||||||| |||||||| | |||||||||||||||| ||||    
T  11814510 ttcattaacacgatacaacaatatttgacctctattattttatatactatcaaaaaaattaaaaatggtgtaatcaacattaatgtctataacccctcgt 11814411  T
Q  201 tgatcaaca-tttctcacatatctttaactcctgaatctactgtgtgtggaagcagagnnnnnnnntaagacannnnnnngagttgtctgacacacctca 299  Q
    ||||||| | ||| | ||| ||||||||||| |||||||| |||||||||||||||||        | | |||       ||||||||  ||| ||||||    
T  11814410 tgatcaatattttgttacacatctttaactcttgaatctattgtgtgtggaagcagagaaaaaaattcaaacatttctttgagttgtcctacaaacctca 11814311  T
Q  300 aataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagt 399  Q
     ||||||||||| ||  ||||| ||||||| ||||||||||   |||| |||||| ||| ||||||||||| | |||||||  ||||||||||||| |||    
T  11814310 tataagtgttatgtaagtgtcaaacaccgaacctaagagtg-ttaagtgaagaag-aaagaacttatttaggatacttgtccaacacgtgtcgtacaagt 11814213  T
Q  400 gtcat 404  Q
    |||||    
T  11814212 gtcat 11814208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 11812720 - 11812604
Alignment:
Q  1 acaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat 100  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  11812720 acaccgacacagctacctatatattaatttatttatctaaattgggaagaaaaatacatacatatgcatctaatttgagcaatttatttcatt-aaaaat 11812622  T
Q  101 ttctatgacaagatacaa 118  Q
    |||||| |||||||||||    
T  11812621 ttctataacaagatacaa 11812604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 11817050 - 11816926
Alignment:
Q  13 ctacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaag 112  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||| ||| |||||    
T  11817050 ctacctatatattaatttatttatctaaattgagaagcaaaatacatacataagcatctaacatgagcaatttatttcattaaaaaatttatataacaag 11816951  T
Q  113 atacaatagcatttgagctttattt 137  Q
    ||||||| | |||||| ||||||||    
T  11816950 atacaatcgtatttgacctttattt 11816926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 11815706 - 11815474
Alignment:
Q  17 ctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaagatac 116  Q
    |||| |||||||||||||| | |||||| |||| |||||||| ||||||| |||||      |||||||||||| || ||||| |||||| |||||||||    
T  11815706 ctatttattaatttatttacctaaattgggaaggaaaatacaaacatatgcatcta------gcaatttatttctttaaaaaagttctataacaagatac 11815613  T
Q  117 aatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctca 216  Q
    || |  ||||||  ||||||| ||||||||||||        ||||||| |||||||||| ||||||| |||||||| || |||||||||||||||||||    
T  11815612 aacaatatttgaaatttattt-tttatctactatctaaataattaaaaaagttgtaatcaactttaatatctataactct-cgttgatcaacatttctca 11815515  T
Q  217 catatctttaactcctgaatctactgtgtgtggaagcagag 257  Q
     | |||| |||||| ||||||||||| |||| |||| ||||    
T  11815514 aacatctctaactcttgaatctactgcgtgtagaagtagag 11815474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 402
Target Start/End: Complemental strand, 11816866 - 11816744
Alignment:
Q  280 gagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgt 379  Q
    |||||||| ||||||||||| |||||||| |||||  |||||||||| |||| || ||||| | || |||||||||||||||||||||||| ||||| ||    
T  11816866 gagttgtccgacacacctcatataagtgtcatataagtgtcagacacggatcttaggagtgtcgaaataaagaagaaaataacttatttaggacactcgt 11816767  T
Q  380 ctgacacgtgtcgtacgagtgtc 402  Q
    |||||||||||| || |||||||    
T  11816766 ctgacacgtgtcataagagtgtc 11816744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 9730035 - 9729832
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||| ||||| |||  ||||||||||||||||||||||||| |||||| |||||| | ||| |    ||| |||||  ||||||||||  | |||||    
T  9730035 caaaatatatacacatgcttctaacttgagcaatttatttcattaaaaaatgttctataataaggt----tagtatttggactttatttatccacctact 9729940  T
Q  149 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 248  Q
    ||       ||||||   |||||||||| |||||||||  | |||| ||||||||||||||||||||||| ||||||||||| |||||| |||  |||||    
T  9729939 atcgaaaaatttaaatgcgttgtaatcaactttaatgtaaaaaacctttcgttgatcaacatttctcacacatctttaactcttgaatccactccgtgtg 9729840  T
Q  249 gaagcaga 256  Q
     |||||||    
T  9729839 aaagcaga 9729832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 48598314 - 48598495
Alignment:
Q  56 acatacatatgaatctaacttgagcaatttatttcattgaaa-aatttctatgacaagatacaatagcatttgagctttatttatttatcta-ctatnnn 153  Q
    ||||||||||| ||||||||||| ||||| |||||||| ||| ||||| ||| ||| |||||||||| |||||| ||||||||||  | |||  |||       
T  48598314 acatacatatgcatctaacttgaacaattcatttcattaaaataatttatataacacgatacaatagtatttgacctttatttatcca-ctatatatcaa 48598412  T
Q  154 nnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatc 237  Q
        || ||||| ||||||| || ||||||| ||||| |||| || ||||||||||||||||||| ||||||||||| ||||||    
T  48598413 aaaattaaaaaacgttgtaaccaactttaatatctatgaccc-tcattgatcaacatttctcacacatctttaactcttgaatc 48598495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 32716434 - 32716354
Alignment:
Q  281 agttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataa 361  Q
    |||||||||||||| |||| || ||| |||||||| |||||||||||||| | || | || |||||||||||| |||||||    
T  32716434 agttgtctgacacaactcatatgagtattatataggtgtcagacaccgattcaaaaaatgtcaaagtaaagaaaaaaataa 32716354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 11812443 - 11812398
Alignment:
Q  349 aagaagaaaataacttatttagaacacttgtctgacacgtgtcgta 394  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||    
T  11812443 aagaagaaaataacttttttaggatacttgtctgacacgtgtcgta 11812398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 11812571 - 11812533
Alignment:
Q  210 tttctcacatatctttaactcctgaatctactgtgtgtg 248  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  11812571 tttctcacacatctttaactcttgaatctactgtgtgtg 11812533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 32716676 - 32716533
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||||| || |  |||||||||||  ||||| ||| ||| |||||  |||||  |||||||||||||| |||||| ||||||||||| ||| |||    
T  32716676 caaaatacatatatgtatatctaacttgaataatttgttttattaaaaaaagttctaaaacaagatacaatagtatttgatctttatttattcatccact 32716577  T
Q  149 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataa 192  Q
    ||        ||||||||| || |||||  ||||||||||||||    
T  32716576 atcgaaaaagttaaaaatggtgcaatcaattttaatgtctataa 32716533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 404
Target Start/End: Complemental strand, 44572411 - 44572331
Alignment:
Q  323 acaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtcat 404  Q
    ||||||||| || ||||| | |||||||||| ||||||| | |||||| ||||  ||  |||||||||||||||||||||||    
T  44572411 acaccgatcgtaggagtgtcgaagtaaagaaaaaaataagt-atttaggacaccggttcgacacgtgtcgtacgagtgtcat 44572331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 11815431 - 11815328
Alignment:
Q  301 ataagtgttatataga-tgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagt 399  Q
    ||||||||||| || | ||||||||||| | ||||| ||||   || ||||||||||| |||||||||||| | |||||||  |||| |||||||| |||    
T  11815431 ataagtgttatgtatagtgtcagacaccaaacctaatagtgttgaaataaagaagaaa-taacttatttaggatacttgtccaacacttgtcgtacaagt 11815333  T
Q  400 gtcat 404  Q
    |||||    
T  11815332 gtcat 11815328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 27616658 - 27616686
Alignment:
Q  376 ttgtctgacacgtgtcgtacgagtgtcat 404  Q
    |||||||||||||||||||||||||||||    
T  27616658 ttgtctgacacgtgtcgtacgagtgtcat 27616686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 3387638 - 3387844
Alignment:
Q  34 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 132  Q
    |||| |||||| ||| ||||||||||||||||| || |||||||| |||||||||| ||| |||||  |||||| |||||||| ||||| |||||| |||    
T  3387638 tatctaaattgagaatcaaaatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttctataacaagataaaatagtatttgacctt 3387737  T
Q  133 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 232  Q
    |||||||| |||||| ||       |||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |    
T  3387738 tatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattgatcaacatttctcacacatctttaactctt 3387837  T
Q  233 gaatcta 239  Q
    |||||||    
T  3387838 gaatcta 3387844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 16426387 - 16426637
Alignment:
Q  13 ctacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaa-aatttct 104  Q
    |||||||||||||||||||||||| |||       |||  ||| ||||||||||||||||| ||||||||||||||||||| |||||| ||| || ||||    
T  16426387 ctacctatatattaatttatttataaaagatataaattaagaatcaaaatacatacatatgcatctaacttgagcaatttacttcattaaaacaagttct 16426486  T
Q  105 atgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgat 204  Q
    || ||||  |||||||| |||||  |||||||||| |||||| |||       ||||||     |||||||| |||||||||||||||| | ||||||||    
T  16426487 ataacaaattacaatagtatttggcctttatttatctatctattattgaaaaatttaaatgcactgtaatcaactttaatgtctataactcctcgttgat 16426586  T
Q  205 caacatttctcacatatctttaactcc-tgaatctactgtgtgtggaagca 254  Q
    |||||||||||||| ||||||||| || |||||||||| ||||| ||||||    
T  16426587 caacatttctcacacatctttaaccccttgaatctactatgtgtagaagca 16426637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 50 - 257
Target Start/End: Complemental strand, 50127323 - 50127116
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaa-aaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| || ||| |||||| |||||||||||||| |||||  |||||||| || |||||||    
T  50127323 caaaatacatacatatgcatctaacttgaacaatttatttcattaaataaagttctataacaagatacaatagtatttggcctttattt-ttcatctact 50127225  T
Q  149 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 248  Q
    ||       ||||||   | || | ||| |||||||||||||||||| ||||| ||||| |||||||| | ||||||||||| |||||||||| || |||    
T  50127224 atcgaaaaatttaaatgcgctgcattcaactttaatgtctataacccctcgttaatcaatatttctcatacatctttaactcttgaatctactctgcgtg 50127125  T
Q  249 gaagcagag 257  Q
    |||||||||    
T  50127124 gaagcagag 50127116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 35 - 256
Target Start/End: Original strand, 3954934 - 3955155
Alignment:
Q  35 atcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagcttt 133  Q
    |||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||  ||||| |||||  | ||||||| || | |||||| ||||    
T  3954934 atcaaaattgagaatcagaatacatacatgtgcatctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcgtatttgaccttt 3955033  T
Q  134 atttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctc-acatatctttaactcct 232  Q
    ||||||  |||||||||         |||||| |||||||||| ||||||| ||| |||||| | ||||||||||||||||| | | |||||||| || |    
T  3955034 atttatccatctactatcgaaaaagctaaaaacgttgtaatcaactttaatctctgtaaccccttgttgatcaacatttctcaagagatctttaa-tctt 3955132  T
Q  233 gaatctactgtgtgtggaagcaga 256  Q
    | |||||| |||||||||||||||    
T  3955133 g-atctaccgtgtgtggaagcaga 3955155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 48632746 - 48632578
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattga-aaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    |||||| |||||||| |||| ||||||||||| ||||||||||||| |||| |||||  ||||||||| |||| |||||| |||||||||||  ||||||    
T  48632746 caaaattcatacataagaatttaacttgagcagtttatttcattgaaaaaagttctaaaacaagataccatagtatttgacctttatttattcttctact 48632647  T
Q  149 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataa-cccttcgttgatcaacatttctca 216  Q
    ||         |||||| |||||||||| ||||||| ||||||| ||| |  |||||||||||||||||    
T  48632646 atcaaaaaagctaaaaacgttgtaatcaactttaatttctataaccccgtaattgatcaacatttctca 48632578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 9149161 - 9149060
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||| ||||||  | ||  ||||||||  |||| |||| | |||||||||||||||||||    
T  9149161 caaaatacatatataagaatctaacttgagaaatttatttcattagaaaaaagtttaaaacaagatatcatagtattttacctttatttatttatctact 9149062  T
Q  149 at 150  Q
    ||    
T  9149061 at 9149060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 16426664 - 16426783
Alignment:
Q  280 gagttgtctgacacacctcaaataagtgttatata-gatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttg 378  Q
    ||||||||  |||| ||||| |||||||||||||| | ||||  |||| | ||| ||||||| |||||||||||| |||| ||||||||||  |||||||    
T  16426664 gagttgtccaacacgcctcatataagtgttatataaggtgtcgaacacgg-tccaaagagtgtcaaagtaaagaaaaaaaaaacttatttatgacacttg 16426762  T
Q  379 tctgacacgtgtcgtacgagt 399  Q
    |  ||||| ||||||||||||    
T  16426763 ttcgacacatgtcgtacgagt 16426783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 125176 - 125225
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 99  Q
    ||||||||||||| | | |||||||||||||||||||||||||| |||||    
T  125176 caaaatacatacacaagtatctaacttgagcaatttatttcattaaaaaa 125225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 404
Target Start/End: Original strand, 3387883 - 3388003
Alignment:
Q  283 ttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctg 382  Q
    ||||| |||||  |||| || |||||||||||| |||  |||||||| ||   ||||| | ||||||||| ||||| || |||||||  ||||| ||| |    
T  3387883 ttgtcggacacgtctcatatgagtgttatataggtgttggacaccga-ccagggagtgtcgaagtaaagatgaaaacaaattatttaagacactagtccg 3387981  T
Q  383 acacgtgtcgtacgagtgtcat 404  Q
    ||||||||||||||||||||||    
T  3387982 acacgtgtcgtacgagtgtcat 3388003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 7021735 - 7021634
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||| |||||||   |||||||||| ||||||||||| |||||||||  |||||  |||| |||| | |  |||||| |||||||||||||||||||    
T  7021735 caaaatatatacataaacatctaacttgcgcaatttattttattgaaaaaagttctaaaacaaaataccacaagatttgacctttatttatttatctact 7021636  T
Q  149 at 150  Q
    ||    
T  7021635 at 7021634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 18476506 - 18476607
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagc-tttatttatttatctact 148  Q
    |||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||   |||||||   ||| |||||| | |||||||||| |||||||    
T  18476506 aaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctact 18476605  T
Q  149 at 150  Q
    ||    
T  18476606 at 18476607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 23431866 - 23431967
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||  |||| |||   ||| ||||||  || ||||||| |||||||    
T  23431866 caaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaaacaaaatatcgtagtatttgacattcatttattcatctact 23431965  T
Q  149 at 150  Q
    ||    
T  23431966 at 23431967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 126360 - 126419
Alignment:
Q  159 ttaaaaatgttgtaatcatctttaatgtctataacccttcg--ttgatcaacatttctca 216  Q
    ||||||||||| |||||| ||||||||||||||||||  |   |||||||||||||||||    
T  126360 ttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctca 126419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 256
Target Start/End: Original strand, 17651258 - 17651465
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaa-aatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  || || |||||| ||||| |||||||  |||||  ||||||||||  |||||||    
T  17651258 caaaatacatacatatgcatctaacttgagcaatttatttcattacaagaagttctataacaagttacaataatatttggcctttatttatccatctact 17651357  T
Q  149 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 248  Q
    ||        ||||| | |||||||||| |||||||||||||||||  |||||||||||||||| ||||| | ||||||||| |||||||| ||||||||    
T  17651358 attgaaaaacttaaatacgttgtaatcaactttaatgtctataacctctcgttgatcaacatttttcacacacctttaactcttgaatctattgtgtgtg 17651457  T
Q  249 gaagcaga 256  Q
     |||||||    
T  17651458 aaagcaga 17651465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 402
Target Start/End: Original strand, 41849126 - 41849358
Alignment:
Q  168 ttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagagnnnnnnnnta 267  Q
    ||||||||| |||||||||| | ||  | |||||| ||||| ||||||||| |||||||| || |||||||||| ||||  |||||||||        |     
T  41849126 ttgtaatcaactttaatgtccagaatgcctcgttgctcaacttttctcacacatctttaattcttgaatctactatgtg--gaagcagagaaaaaaattc 41849223  T
Q  268 agacannnnnnngagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatt 367  Q
    |||||       |||||||| ||||| ||||| ||||||||||||||| |||| ||||||  ||| | ||||| | || |||| ||||||||||||||||    
T  41849224 agacatttgtttgagttgtccgacacgcctcatataagtgttatataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaataacttatt 41849323  T
Q  368 tagaacacttgtctgacacgtgtcgtacgagtgtc 402  Q
    ||| ||||||||  || ||||||| || |||||||    
T  41849324 taggacacttgttcgatacgtgtcataggagtgtc 41849358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 44650126 - 44649966
Alignment:
Q  55 tacatacatatgaatctaacttgagcaatttatttcattgaaaaat--ttctatgacaagatacaatagcatttgagctttatttatttatctactatnn 152  Q
    |||||||||| | || ||| |||||||||||||||||||||||||   || ||  ||||||||| |||| |||||| ||||||||||| |||||||||      
T  44650126 tacatacataagcatataaattgagcaatttatttcattgaaaaaaaattataaaacaagataccatagaatttgacctttatttattcatctactatca 44650027  T
Q  153 nnnnntttaaaaatgttgtaatcatctttaatgtctataa-cccttcgttgatcaacattt 212  Q
          |||||||||||||||||| ||||||| ||||||| ||| |  |||||||||||||    
T  44650026 aaaaagttaaaaatgttgtaatcaactttaatttctataagcccctaattgatcaacattt 44649966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 41848962 - 41849067
Alignment:
Q  1 acaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt 93  Q
    ||||||||||  ||| |||||||||||||||||||| |||       |||| ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  41848962 acaccgacaccgctatctatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgaatctaacttgagcactttatttcatt 41849061  T
Q  94 gaaaaa 99  Q
     |||||    
T  41849062 aaaaaa 41849067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 254
Target Start/End: Complemental strand, 4748224 - 4748037
Alignment:
Q  69 tctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatg 167  Q
    ||||||||||||||||||||||||| |||||| |||||  ||||| ||| |||| |||||| ||||||||||| |||| ||||         ||||||||    
T  4748224 tctaacttgagcaatttatttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatg 4748125  T
Q  168 ttgtaatcatctttaatg--tctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 254  Q
     |||||||| ||||||||  |||||||||| ||  ||||||||||||| || | |  | |||||| || |||||| |||||||||||||    
T  4748124 ctgtaatcaactttaatgtctctataacccctcagtgatcaacatttcaca-acacatgtaactcttggatctacggtgtgtggaagca 4748037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 9929631 - 9929731
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 149  Q
    |||||||||| |||   |||||| ||||||||||||||||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  9929631 aaaatacatatataaacatctaatttgagcaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 9929730  T
Q  150 t 150  Q
    |    
T  9929731 t 9929731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 18724775 - 18724691
Alignment:
Q  173 atcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 257  Q
    |||| |||| ||||||||||  | |||||||||| ||||||||||| ||||||||||| |||||||||| |||| ||||| ||||    
T  18724775 atcaactttgatgtctataattcctcgttgatcagcatttctcacacatctttaactcttgaatctactatgtgcggaagtagag 18724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 26576061 - 26576161
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 149  Q
    |||||||||| |||   |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  26576061 aaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 26576160  T
Q  150 t 150  Q
    |    
T  26576161 t 26576161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 32200985 - 32200885
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 149  Q
    |||||||||| |||   |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  32200985 aaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 32200886  T
Q  150 t 150  Q
    |    
T  32200885 t 32200885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 13037325 - 13037408
Alignment:
Q  68 atctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 150  Q
    |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| |||||||||    
T  13037325 atctaacttgagcaatttatgtcatttgaaaaagttctacaacaagatatcatagtatttgatctttatttattcatctactat 13037408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 404
Target Start/End: Complemental strand, 38783670 - 38783569
Alignment:
Q  303 aagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtc 402  Q
    |||||||||| || |||| ||||||| ||| | ||||| | ||||| | ||||||||||||||||||  |||||||||| |||| |||| |||| |||||    
T  38783670 aagtgttatacaggtgtcggacaccggtccaaggagtgtcgaagtagaaaagaaaataacttatttaagacacttgtctcacacatgtcatacgggtgtc 38783571  T
Q  403 at 404  Q
    ||    
T  38783570 at 38783569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 404
Target Start/End: Original strand, 17651490 - 17651611
Alignment:
Q  281 agttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtc 380  Q
    ||||||| ||||| ||||| ||||||||||||||  |||| ||||||| ||  | ||||| | ||||||||||||||| ||| ||||||| ||||||||     
T  17651490 agttgtccgacacgcctcatataagtgttatataagtgtcggacaccggtcaaaggagtgtcgaagtaaagaagaaaacaac-tatttaggacacttgtt 17651588  T
Q  381 tgacacgtgtcgtacgagtgtcat 404  Q
     |||| |||| |||| ||||||||    
T  17651589 cgaca-gtgttgtacaagtgtcat 17651611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 34409743 - 34409647
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctac 147  Q
    |||||||||| |||   ||||||||||||||||||| | |||| |||||| |||||  ||||||||  |||| |||||| ||||||||||||||||||    
T  34409743 aaaatacatatataaacatctaacttgagcaatttagt-cattagaaaaagttctacaacaagatattatagtatttgacctttatttatttatctac 34409647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 16661351 - 16661291
Alignment:
Q  39 aaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 99  Q
    |||||| ||| || ||||||||||| || |||||||||||||||||||||| ||| |||||    
T  16661351 aaattgagaatcagaatacatacatgtgtatctaacttgagcaatttattttattaaaaaa 16661291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 396
Target Start/End: Complemental strand, 34409482 - 34409391
Alignment:
Q  304 agtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacg 396  Q
    |||||||||||| |||| |||||||||| || | ||| | |||||||||| |||| || |||||||| ||||  || ||||||||||||||||    
T  34409482 agtgttatataggtgtcggacaccgatcataggcgtgtcgaagtaaagaaaaaaacaa-ttatttaggacaccggtttgacacgtgtcgtacg 34409391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 27004035 - 27004133
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    |||||||||| |||   |||||||||||| |||||||||||||  ||||| ||||   ||||||||  |||| |||||| ||||||||||| |||||||    
T  27004035 aaaatacatatataaacatctaacttgagaaatttatttcattaaaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctact 27004133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 38783783 - 38783673
Alignment:
Q  40 aattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttattta 138  Q
    ||||| ||| ||||||||||||||||  ||||| || | |||||||||||||||  ||||| || ||| ||||||||||| |  ||||||  ||||||||    
T  38783783 aattgagaatcaaaatacatacatatacatctatctagggcaatttatttcattaaaaaaagttttataacaagatacaacaatatttgacatttattta 38783684  T
Q  139 tttatctacta 149  Q
    |  ||||||||    
T  38783683 tccatctacta 38783673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 26576325 - 26576424
Alignment:
Q  304 agtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtca 403  Q
    |||||||||||| |||  || ||||||| || ||||| |||||||||||| ||||| | |||||||  ||||  ||  ||||||||||||||| ||||||    
T  26576325 agtgttatataggtgttggagaccgatcgtaggagtgtcaaagtaaagaa-aaaatcaattatttaagacaccggttcgacacgtgtcgtacgggtgtca 26576423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 34409633 - 34409577
Alignment:
Q  160 taaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctca 216  Q
    |||||||| | |||||| || ||||||||||||||| |  |||||||||||||||||    
T  34409633 taaaaatgatataatcaactataatgtctataacccctaattgatcaacatttctca 34409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 18393730 - 18393524
Alignment:
Q  34 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 132  Q
    |||| |||||| ||| || |||||||||||||| || |||||||| |||||||||| ||| |||||  || ||| |||||||| ||||| |||||| |||    
T  18393730 tatctaaattgagaatcataatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttttataacaagataaaatagtatttgacctt 18393631  T
Q  133 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 232  Q
    |||||||  |||||||||       |||||||| |||||||||| ||||||||||||||||||||  |||||||||||||||| || ||||||||||| |    
T  18393630 tatttatccatctactatcaaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattgatcaacatttctcgcacatctttaactctt 18393531  T
Q  233 gaatcta 239  Q
    |||||||    
T  18393530 gaatcta 18393524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 34 - 404
Target Start/End: Original strand, 13097427 - 13097794
Alignment:
Q  34 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 132  Q
    |||| |||||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| |||||  ||| || |||| ||   || | ||||     |    
T  13097427 tatctaaattgagaatcaaaatacatacatatgcatctaactcaagcaatttatttcattaaaaaaagttccataacaatatttgatcg-attt-----t 13097520  T
Q  133 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 232  Q
    |||||||| |||||||||       || ||||||||| |||||| |||||||||| ||||||  | |||||||||||||||||||| ||||||||||| |    
T  13097521 tatttattcatctactattgaaaaattaaaaaatgttttaatcaactttaatgtccataacctcttgttgatcaacatttctcacacatctttaactctt 13097620  T
Q  233 gaatctactgtgtgtggaagcagag--nnnnnnnntaagacannnnnnngagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgat 330  Q
    |||||||||||||||||||||||||          | | |||       || ||||| ||||| | ||| ||||||||||||||| ||||  |||||| |    
T  13097621 gaatctactgtgtgtggaagcagagacaaaaaaaatcaaacatttgtttgaattgtccgacacgcttcatataagtgttatataggtgtcgcacaccggt 13097720  T
Q  331 cctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtcat 404  Q
    |  | ||||| || |||||||||||||||| ||||||||| | |||| || ||| |||||||||||||||||||    
T  13097721 ctaaggagtgtcacagtaaagaagaaaatatcttatttaggatacttatccgactcgtgtcgtacgagtgtcat 13097794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 27401812 - 27401997
Alignment:
Q  40 aattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttattta 138  Q
    ||||| ||| ||||||| |||||| || ||||||||||||||||||||||||||  ||||| || ||| |||||||||||||| |||||  |||||||||    
T  27401812 aattgagaatcaaaatatatacatctgcatctaacttgagcaatttatttcattaaaaaaagttatataacaagatacaatagaatttggcctttattta 27401911  T
Q  139 tttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctt 224  Q
    |  |||||||||          ||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||    
T  27401912 tccatctactattgaaagaaaaaaaaacgttgtaatcaactttaatgtctataacccctcgttgatcaacatttttcacacatctt 27401997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 254
Target Start/End: Complemental strand, 2889884 - 2889699
Alignment:
Q  63 tatgaatctaacttgagcaatttatttcattgaaaaatt-tctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnttta 161  Q
    |||| |||| ||||||||||||||||||||| |||||   ||||| |||||||||||||| |||||  ||||||||||  |||||||||       ||||    
T  2889884 tatgtatcttacttgagcaatttatttcattaaaaaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaattta 2889785  T
Q  162 aaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 254  Q
    |||| |||||| ||| |||       |||| ||||||||||||||||||||  | ||  |||||||||| ||||| |||| ||||||||||||    
T  2889784 aaaacgttgtattcaactt-------tatagcccttcgttgatcaacattttccgcacgtctttaactcttgaatatactatgtgtggaagca 2889699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 251
Target Start/End: Original strand, 1226083 - 1226258
Alignment:
Q  78 agcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatca 176  Q
    ||||||||||||||||||||||  || ||  ||||||||| | || |||||| ||||||||||| |||||||||       |||||||||||||||||||    
T  1226083 agcaatttatttcattgaaaaaagttataaaacaagataccagagtatttgatctttatttattcatctactatcaaaaa-tttaaaaatgttgtaatca 1226181  T
Q  177 tctttaatgtctataaccct-tcgttgatcaacatttctc-acatatctttaactcctgaatctactgtgtgtggaa 251  Q
     ||||||| ||||||| ||| |  ||||| |||||||||| ||| || |||||||| || ||||||  |||||||||    
T  1226182 actttaatttctataaacctctaattgattaacatttctcaacacatatttaactcttgtatctacgatgtgtggaa 1226258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 254
Target Start/End: Complemental strand, 2875532 - 2875344
Alignment:
Q  60 acatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnt 158  Q
    ||||||| ||||||||||||||||||| ||||||  |||||  | ||| |||||||||||||| |||||  ||||||||||  |||||||||       |    
T  2875532 acatatgtatctaacttgagcaatttagttcattaaaaaaaggtttataacaagatacaatagtatttggcctttatttatccatctactattgaaaaat 2875433  T
Q  159 ttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 254  Q
    ||||| | |||||||||| |||       |||| ||||||||||||||||||||  | ||  |||| ||||| ||||| |||| ||||||||||||    
T  2875432 ttaaacacgttgtaatcaactt-------tatagcccttcgttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagca 2875344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 2875005 - 2874902
Alignment:
Q  301 ataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtg 400  Q
    |||||| |||||||| |||  ||||||  ||| | ||||| |||| ||||||||||||  | |||||||| ||||||||||||||||||| ||| |||||    
T  2875005 ataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaagaagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtg 2874906  T
Q  401 tcat 404  Q
    ||||    
T  2874905 tcat 2874902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 254
Target Start/End: Original strand, 3159842 - 3160028
Alignment:
Q  62 atatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnttt 160  Q
    ||||| ||||||||||||||||||||||||||  |||||  ||||| ||||| |||||||| |||||  ||||||||||  ||||| |||       |||    
T  3159842 atatgtatctaacttgagcaatttatttcattaaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatctaatatcgaaaaattt 3159941  T
Q  161 aaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 254  Q
    ||| | |||||||||| |||       |||| ||||||||||||||||||||  | ||  |||||||||| ||||| |||| |||||| |||||    
T  3159942 aaacacgttgtaatcaactt-------tatagcccttcgttgatcaacattttccgcacgtctttaactcttgaatatactatgtgtgtaagca 3160028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 3145256 - 3145339
Alignment:
Q  68 atctaacttgagcaatttatttcattgaaaaatt-tctatgacaagatacaatagcatttgagctttatttatttatctactat 150  Q
    |||| ||||||||||||||||||||| |||||   ||||| |||||||||||||| |||||  ||||||||||  |||||||||    
T  3145256 atcttacttgagcaatttatttcattaaaaaaaggtctataacaagatacaatagtatttggcctttatttatccatctactat 3145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28867231 - 28867336
Alignment:
Q  1 acaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt 93  Q
    ||||| |||| |||| |||||||||||||||||||| |||       |||| ||| ||||||||||| ||||| ||||||||| || |||||||||||||    
T  28867231 acaccaacactactatctatatattaatttatttataaaacatttaaattgagaatcaaaatacatatatatgcatctaacttaagtaatttatttcatt 28867330  T
Q  94 gaaaaa 99  Q
     |||||    
T  28867331 aaaaaa 28867336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 2796200 - 2796294
Alignment:
Q  60 acatatgaatctaacttgagcaatttatttcatt----gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 150  Q
    ||||||| ||||||||||||||||||||||||||     |||||  ||||| ||||| |||||||| |||||  ||||||||||  |||||||||    
T  2796200 acatatgcatctaacttgagcaatttatttcattaaaaaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatctactat 2796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 2889610 - 2889545
Alignment:
Q  336 gagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgt 401  Q
    ||||| |||| ||||| ||||||  | |||||||| |||||||||||||| |||||||||||||||    
T  2889610 gagtgtcaaaataaaggagaaaaatatttatttagtacacttgtctgacaagtgtcgtacgagtgt 2889545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 28869800 - 28869899
Alignment:
Q  7 acacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 99  Q
    |||| |||| |||||||||||||||||||| |||       |||| ||| ||||||||||||||||| ||||||||| |  ||||||||||||| |||||    
T  28869800 acactactatctatatattaatttatttataaaatatttaaattgagaatcaaaatacatacatatgcatctaacttaaataatttatttcattaaaaaa 28869899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 18393425 - 18393365
Alignment:
Q  344 aagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtcat 404  Q
    ||||||||| ||||| || |||||||| ||||| ||  |||||||||||||||||||||||    
T  18393425 aagtaaagatgaaaacaaattatttaggacactagttcgacacgtgtcgtacgagtgtcat 18393365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 15850619 - 15850518
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||||| ||| | |||||| |||||||| |||||||||| |||||| || ||  ||||||||  | || ||||||  |||||||||| |||||||    
T  15850619 caaaatacatatataagtatctaatttgagcaaattatttcattagaaaaagttataaaacaagatatcacagtatttgacatttatttattcatctact 15850520  T
Q  149 at 150  Q
    ||    
T  15850519 at 15850518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 2797264 - 2797320
Alignment:
Q  336 gagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcg 392  Q
    ||||| |||| ||||| ||||||  | |||||||| |||||||||||||||||||||    
T  2797264 gagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgtcg 2797320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 28421061 - 28421141
Alignment:
Q  71 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 150  Q
    ||||||||||||||||| ||||| |||||| || ||  ||||||||  |||  |||||| ||||||||||| |||||||||    
T  28421061 taacttgagcaatttatgtcattagaaaaagttttacaacaagatatcatatgatttgacctttatttattcatctactat 28421141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 209174 - 209396
Alignment:
Q  34 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 132  Q
    |||| |||||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| |||||  |||||| |||| |||||| |  |||||  |||    
T  209174 tatctaaattgagaatcaaaatacatacatatgcatctaact--agcaatttatttcattaaaaaaagttctataacaaaatacaacaatatttggcctt 209271  T
Q  133 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 232  Q
    |||||||  |||||| ||       |||||||| |||||||| | |||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |    
T  209272 tatttatccatctacaatcgaaaaatttaaaaacgttgtaataaactttaatgtcgataacccctcgttgatcaacatttctcacaaatctttaactctt 209371  T
Q  233 gaatctactgtgtgtggaagcagag 257  Q
    ||||||||  |||||| ||||||||    
T  209372 gaatctaccatgtgtgaaagcagag 209396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 555 - 294
Alignment:
Q  1 acaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt 93  Q
    ||||||||||  ||| |||||||||||||||||||| |||       |||  ||| ||||||||||| ||||| ||||||||||||||| ||||||||||    
T  555 acaccgacaccgctatctatatattaatttatttataaaagatcttaattaagaatcaaaatacata-atatgcatctaacttgagcaaattatttcatt 457  T
Q  94 gaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataa 192  Q
     |||||  |||||| |||||||||||||| |||||| ||||||||||  |||| ||||       || ||| | |||| ||||| |||| ||||| ||||    
T  456 aaaaaaaattctataacaagatacaatagtatttgacctttatttatccatctgctatcgaaaa-ttgaaatacgttggaatcaactttgatgtccataa 358  T
Q  193 cccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcaga 256  Q
    ||| | |||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||    
T  357 cccattgttgatcaacatttctcacacatctttaacccttgaatctactgtgtgtagaagcaga 294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 260 - 191
Alignment:
Q  334 aagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtcat 404  Q
    ||||||| | |||||||||| ||||| |||||||||| ||||||||| ||||| |||||||||||| ||||    
T  260 aagagtgtcgaagtaaagaa-aaaatgacttatttaggacacttgtccgacacatgtcgtacgagtctcat 191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 33235014 - 33234836
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 149  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||||| || ||| |||||||||||||| |||||| | ||||||||  ||||||||    
T  33235014 caaaatacatacat--gcatctaacttgagcaatttatttcattaaaaaagttttataacaagatacaatagtatttga-ccttatttatccatctacta 33234918  T
Q  150 tnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatc--aacatttctcacatatctttaactc 230  Q
    |       ||| ||||||||||||||| |||||||||||||||||| |  ||||||  ||||||||||||  |||||||||||    
T  33234917 t-cgaaaatttcaaaatgttgtaatcaactttaatgtctataaccccttcttgatcaaaacatttctcacgcatctttaactc 33234836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2602033 - 2602289
Alignment:
Q  1 acaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt 93  Q
    ||||||||||  |||||||||||||||||||||||| |||       |||  ||| ||||||||| ||||||| ||||||||| ||||  ||| ||||||    
T  2602033 acaccgacacctctacctatatattaatttatttataaaagatctaaattaagaatcaaaatacaaacatatgcatctaactt-agcagattacttcatt 2602131  T
Q  94 -gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataa 192  Q
     ||||||  | ||| |||||||||||||| ||||   ||||||||||  || ||||||       ||||||  ||||||||||| ||||||||| |||||    
T  2602132 agaaaaaggtatataacaagatacaatagtatttaccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 2602231  T
Q  193 cccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaag 252  Q
     || | |||||||||||||||||||| |  |||||||| |||||||  ||||||||||||    
T  2602232 accctagttgatcaacatttctcacaga--tttaactcttgaatctgttgtgtgtggaag 2602289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 402
Target Start/End: Original strand, 17261714 - 17261946
Alignment:
Q  170 gtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagagnnnnnnnntaag 269  Q
    ||||||| |||||||||  ||||||| || ||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||        | |     
T  17261714 gtaatcaactttaatgtacataacccctcattgatcaacatttctcacacatctttaactcttaaatctaatgtgtgtggaagcagagaaaaaaattcat 17261813  T
Q  270 acannnnnnngagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaag-agtgacaaagtaaagaagaaaataacttattt 368  Q
    |||       || ||||| ||||||| ||| ||||||||||   || |||| ||||||| | ||||| |||| | || |||||||||||| | |||||||    
T  17261814 acatatgtttgaattgtccgacacacttcatataagtgttaagcaggtgtcggacaccggt-ctaagaagtgtcgaaataaagaagaaaacaccttattt 17261912  T
Q  369 agaacacttgtctgacacgtgtcgtacgagtgtc 402  Q
    || |  |||||| |||||||||||||||||||||    
T  17261913 aggaatcttgtcggacacgtgtcgtacgagtgtc 17261946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 12843903 - 12844069
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 149  Q
    |||||||||| |||   |||||||||||||||| ||||||||| ||| || |||||  | ||||||  |||| |||||| ||||||||||| ||||||||    
T  12843903 aaaatacatatataaacatctaacttgagcaatatatttcattagaacaagttctacaataagatatcatagtatttgacctttatttattcatctacta 12844002  T
Q  150 tnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctca 216  Q
    |         |||||||| | |||||| || |||||| |||||||| |  |||||||||||||||||    
T  12844003 tcaaaaaagctaaaaatgatataatcaactataatgtgtataacccctaattgatcaacatttctca 12844069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 33234796 - 33234711
Alignment:
Q  317 tgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtc 402  Q
    |||| ||||||| ||| ||||||  | ||||||||| ||||| ||||||||||  |||||||||  ||||||||||||||||||||    
T  33234796 tgtcggacaccggtccaaagagtatcgaagtaaagatgaaaacaacttatttatgacacttgtccaacacgtgtcgtacgagtgtc 33234711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 57106 - 57162
Alignment:
Q  160 taaaaatgttgtaatcatctttaatgtctataaccct-tcgttgatcaacatttctc 215  Q
    |||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||    
T  57106 taaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctc 57162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 34708928 - 34709028
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 149  Q
    |||||||||| |||   |||||||||||| ||||||||||||| |||||| ||||   ||||||||  |||| |||||| ||||||||||| ||||||||    
T  34708928 aaaatacatatataaacatctaacttgagaaatttatttcattagaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctacta 34709027  T
Q  150 t 150  Q
    |    
T  34709028 t 34709028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 404
Target Start/End: Original strand, 34013722 - 34013842
Alignment:
Q  283 ttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctg 382  Q
    |||||||||||  |||  || |||||||||||| |||| |||||| ||| || ||||| | |||||||||| |||| || |||||||| ||||  ||  |    
T  34013722 ttgtctgacacggctcgtatgagtgttatataggtgtcggacaccaatcgtaggagtgtcgaagtaaagaaaaaaacaa-ttatttaggacaccggttcg 34013820  T
Q  383 acacgtgtcgtacgagtgtcat 404  Q
    ||||||||||||| ||||||||    
T  34013821 acacgtgtcgtacaagtgtcat 34013842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 6821025 - 6821073
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaa 98  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||| ||||    
T  6821025 caaaatatatacatatgcatctatcttgagcaatttatttcattaaaaa 6821073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 14494339 - 14494239
Alignment:
Q  304 agtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtca 403  Q
    |||||||||||| |||| |||||||||  || ||||| | |||||||||| ||||  | |||||||  ||||| ||  ||||||||||||||| ||||||    
T  14494339 agtgttatataggtgtcggacaccgattgtaggagtgtcgaagtaaagaaaaaaaacaattatttaagacactggttcgacacgtgtcgtacgggtgtca 14494240  T
Q  404 t 404  Q
    |    
T  14494239 t 14494239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 395
Target Start/End: Original strand, 12844142 - 12844256
Alignment:
Q  280 gagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgt 379  Q
    ||||||||||||||| |||  || |||||||||||  ||||||||| ||||| || ||||| | |||||||||| ||||  | |||||||| ||||  ||    
T  12844142 gagttgtctgacacagctcgtatgagtgttatataagtgtcagacatcgatcttaggagtgtcgaagtaaagaa-aaaaccaattatttaggacaccggt 12844240  T
Q  380 ctgacacgtgtcgtac 395  Q
      ||||||||||||||    
T  12844241 tcgacacgtgtcgtac 12844256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 19294591 - 19294689
Alignment:
Q  304 agtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtca 403  Q
    ||||||||| || |||| |||||||||| |||||||| | |||||||||| |||| || |||||| | ||||  ||  ||||||||||||||| ||||||    
T  19294591 agtgttatacaggtgtcggacaccgatcgtaagagtgtcgaagtaaagaaaaaaacaa-ttattttggacaccggttcgacacgtgtcgtacgggtgtca 19294689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 19294385 - 19294482
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 149  Q
    |||||||||| |||   ||||||||| |||||||||||||||| |||||| |||    ||||||||  |||| |||||| ||||||||||| ||||||||    
T  19294385 aaaatacatatataaacatctaacttaagcaatttatttcattagaaaaagttc---aacaagatatcatagtatttgacctttatttattcatctacta 19294481  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 404
Target Start/End: Complemental strand, 34011128 - 34011008
Alignment:
Q  283 ttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctg 382  Q
    |||||||||||  |||  || |||||||||||| |||| |||||| ||| || ||||| | |||||||||| |||| || |||||||| ||||  ||  |    
T  34011128 ttgtctgacacggctcgtatgagtgttatataggtgtcggacaccaatcgtaggagtgtcgaagtaaagaaaaaaacaa-ttatttaggacaccggttcg 34011030  T
Q  383 acacgtgtcgtacgagtgtcat 404  Q
    |||||||||| || ||||||||    
T  34011029 acacgtgtcgcacaagtgtcat 34011008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 17540017 - 17540117
Alignment:
Q  51 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 149  Q
    |||||||||| |||   |||||||||| |||||||||  |||| |||||| ||||   | ||||||  |||| |||||| ||||||||||||||||||||    
T  17540017 aaaatacatatataaacatctaacttgggcaatttatgacattagaaaaagttctgcaataagatatcatagtatttgacctttatttatttatctacta 17540116  T
Q  150 t 150  Q
    |    
T  17540117 t 17540117  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 42718643 - 42718554
Alignment:
Q  167 gttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 257  Q
    |||| ||||| ||||||||| ||||| || |||||| |||||||||||||||  | |||||||| | |||||| |||||||||||||||||    
T  42718643 gttggaatcaactttaatgtttataatccctcgttgttcaacatttctcacacgt-tttaactcttaaatctattgtgtgtggaagcagag 42718554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 21409023 - 21408922
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||| | ||| |||||||| |||||||| |||||||||| |||||| |||||  | ||||||   ||| |||||| ||||||||||| |||||||    
T  21409023 caaaatacaaatataagaatctaatttgagcaagttatttcattagaaaaaattctaaaataagatatcgtagtatttgacctttatttattcatctact 21408924  T
Q  149 at 150  Q
    ||    
T  21408923 at 21408922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 11410682 - 11410783
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    |||||||||||  || | ||||||||||||||| |||||||||| |||||| |||||  | ||||||   ||| |||| | ||||||||||| |||||||    
T  11410682 caaaatacatatttaagcatctaacttgagcaagttatttcattagaaaaagttctaaaagaagatatcgtagtatttaacctttatttattcatctact 11410781  T
Q  149 at 150  Q
    ||    
T  11410782 at 11410783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 17715742 - 17715694
Alignment:
Q  304 agtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaa 353  Q
    |||||||||||| |||||||||||||| ||| ||||| ||||||||||||    
T  17715742 agtgttatataggtgtcagacaccgat-ctaggagtgtcaaagtaaagaa 17715694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 19016971 - 19016923
Alignment:
Q  304 agtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaa 353  Q
    |||||||||||| |||||||||||||| ||| ||||| ||||||||||||    
T  19016971 agtgttatataggtgtcagacaccgat-ctaggagtgtcaaagtaaagaa 19016923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 32676797 - 32676657
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 148  Q
    ||||||||||||||| | |||||| ||||||||||||||||||| |||||| || ||  ||||||||  |||  |||||| | ||||||||| |||||||    
T  32676797 caaaatacatacataagcatctaa-ttgagcaatttatttcattagaaaaagttataaaacaagatatcatattatttgatc-ttatttattcatctact 32676700  T
Q  149 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctata 191  Q
    ||        ||||||||||| |||||| ||||||||||||||    
T  32676699 atcaaaaaagttaaaaatgttataatcaactttaatgtctata 32676657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 38989395 - 38989252
Alignment:
Q  68 atctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaat 166  Q
    |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| ||||||  |||||||||| |||||||||       |||||||||    
T  38989395 atctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaaat 38989296  T
Q  167 gttgtaatcatctttaatgtctataacccttcgttgatcaacattt 212  Q
    | | ||||||    ||||||||||||||| |  |||||||||||||    
T  38989295 gatataatca--aataatgtctataacccctaattgatcaacattt 38989252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 4112005 - 4112065
Alignment:
Q  39 aaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 99  Q
    |||||| ||| ||||||||||||||||| |||||||  |||| |||||||||||| |||||    
T  4112005 aaattgagaatcaaaatacatacatatgcatctaaccggagccatttatttcattaaaaaa 4112065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 40837805 - 40837871
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagata 115  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||  ||||||||    
T  40837805 caaaatacatatataagcatctaacttgagcaaattatttcattagaaaaagttctaaaacaagata 40837871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 2641136 - 2641307
Alignment:
Q  50 caaaatacataca---tatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatct 145  Q
    |||||||||||||   || |||| ||| |||||||| ||||||||||||||||  |||||  |||| |||| || | |||||| ||||||||||||||||    
T  2641136 caaaatacatacacaataagaatttaatttgagcaacttatttcattgaaaaaagttctaaaacaaaatactatggtatttgacctttatttatttatct 2641235  T
Q  146 actatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataac-ccttcgttgatcaacatttctca 216  Q
    |||||        | |||||  ||||||||| ||||||| |||||||| || |  |||||||||||||||||    
T  2641236 actataaaaaaagtcaaaaacattgtaatcaactttaatttctataactccatgattgatcaacatttctca 2641307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 54305676 - 54305752
Alignment:
Q  71 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatcta 146  Q
    ||||||||||||||||||| ||| |||||| ||||| |||||||||  |||| |||||| ||||||||||| |||||    
T  54305676 taacttgagcaatttatttaattagaaaaagttctacgacaagatatcatagtatttgacctttatttattcatcta 54305752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 44507705 - 44507893
Alignment:
Q  68 atctaacttgagcaatttatttcattgaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatg 167  Q
    |||||| ||||| ||||||||||||| ||||| |||||  |||| |||  ||  ||||||| ||||||||||  |||| ||||         ||||||||    
T  44507705 atctaatttgagaaatttatttcattaaaaaaattctaaaacaaaatatgatgacatttgacctttatttatccatcttctataaaaaaagataaaaatg 44507804  T
Q  168 ttgtaatcatctttaatgtctataacccttcgttgatc-aacatttctc-acatatctttaactcctgaatctactgtgtgtggaagca 254  Q
    |||||||   ||||||||||||||| || || |||||| |||||||||| |||||| |||||||| ||  ||||  |||||||||||||    
T  44507805 ttgtaattgactttaatgtctataatccctcattgatctaacatttctcaacatatatttaactcatgtgtctatggtgtgtggaagca 44507893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 32593781 - 32593835
Alignment:
Q  39 aaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt 93  Q
    ||||| |||| ||||||||| ||||||| ||||||||| ||||||||||||||||    
T  32593781 aaattatgaatcaaaatacacacatatgcatctaacttaagcaatttatttcatt 32593835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 401
Target Start/End: Complemental strand, 40289054 - 40288958
Alignment:
Q  304 agtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgt 401  Q
    |||||||||||| |||| |||||||||| || ||||| | |||||||||| || | || |||||||||||||  ||  ||||||| ||||||||||||    
T  40289054 agtgttatataggtgtcggacaccgatcgtaggagtgtcgaagtaaagaaaaacacaa-ttatttagaacaccggttcgacacgtatcgtacgagtgt 40288958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 32593973 - 32594018
Alignment:
Q  200 ttgatcaacatttctcacatatctttaactcctgaatctactgtgtgt 247  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  32593973 ttgatcaacatttctcacat--ctttaactcttgaatctactgtgtgt 32594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 32595251 - 32595311
Alignment:
Q  344 aagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtcat 404  Q
    |||| ||||||| || ||||||||||  ||||||||  |||||||||||||||||||||||    
T  32595251 aagtgaagaagataacaacttatttaagacacttgttggacacgtgtcgtacgagtgtcat 32595311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 40289294 - 40289214
Alignment:
Q  71 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 150  Q
    |||||||  |||||||||||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| |||||||||    
T  40289294 taacttggacaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactat 40289214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 17732772 - 17732874
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagc-tttatttatttatctac 147  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||   |||||||   ||| |||||| | |||||||||| ||||||    
T  17732772 caaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctac 17732871  T
Q  148 tat 150  Q
    |||    
T  17732872 tat 17732874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 45612337 - 45612238
Alignment:
Q  304 agtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtca 403  Q
    ||||||||| || |||| |||| ||||| || ||||| | | |||||||| |||| || |||||||| ||||  || |||||||||||||||| ||||||    
T  45612337 agtgttatacaggtgtcggacatcgatcgtaggagtgtcgacgtaaagaaaaaaacaa-ttatttaggacaccggtttgacacgtgtcgtacgggtgtca 45612239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 12877 - 12926
Alignment:
Q  50 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 99  Q
    ||||||||| ||||| |||| |||||||||||||||||||||| ||||||    
T  12877 caaaatacaaacataagaatttaacttgagcaatttatttcatcgaaaaa 12926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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