View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_high_8 (Length: 405)

Name: NF20160_high_8
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_high_8
NF20160_high_8
[»] chr7 (27 HSPs)
chr7 (1-222)||(32538400-32538616)
chr7 (1-186)||(37632634-37632818)
chr7 (13-193)||(3407401-3407575)
chr7 (18-193)||(28363241-28363412)
chr7 (90-221)||(3937272-3937403)
chr7 (100-193)||(16279754-16279847)
chr7 (301-389)||(32538687-32538770)
chr7 (13-190)||(44959660-44959832)
chr7 (9-61)||(44959607-44959659)
chr7 (11-61)||(3407576-3407626)
chr7 (3-77)||(25981384-25981458)
chr7 (12-58)||(36107489-36107535)
chr7 (9-61)||(16279582-16279634)
chr7 (12-58)||(24954676-24954722)
chr7 (19-58)||(41987150-41987189)
chr7 (9-55)||(3936964-3937010)
chr7 (13-75)||(16279635-16279697)
chr7 (12-58)||(40210276-40210322)
chr7 (106-152)||(41987205-41987251)
chr7 (1-60)||(33130712-33130771)
chr7 (106-152)||(36107551-36107597)
chr7 (156-210)||(37451923-37451977)
chr7 (106-152)||(40210214-40210260)
chr7 (305-342)||(37632488-37632525)
chr7 (13-73)||(3937197-3937256)
chr7 (6-70)||(12342268-12342332)
chr7 (154-210)||(25981488-25981544)
[»] chr5 (26 HSPs)
chr5 (1-218)||(14634415-14634632)
chr5 (1-208)||(40484653-40484867)
chr5 (90-193)||(10540577-10540680)
chr5 (14-196)||(35667379-35667553)
chr5 (17-193)||(26363119-26363283)
chr5 (91-218)||(34696842-34696962)
chr5 (1-63)||(35667553-35667615)
chr5 (1-58)||(9888916-9888973)
chr5 (9-61)||(10540452-10540504)
chr5 (9-61)||(26363062-26363114)
chr5 (116-208)||(41359370-41359462)
chr5 (12-61)||(41359224-41359273)
chr5 (12-58)||(16049104-16049150)
chr5 (1-70)||(7871454-7871523)
chr5 (13-76)||(34696764-34696825)
chr5 (13-77)||(41359274-41359338)
chr5 (17-72)||(10540509-10540564)
chr5 (12-58)||(23928073-23928119)
chr5 (155-208)||(6010591-6010644)
chr5 (17-58)||(29289613-29289654)
chr5 (106-152)||(9888854-9888900)
chr5 (106-152)||(29289551-29289597)
chr5 (12-61)||(34696711-34696763)
chr5 (155-196)||(4421711-4421752)
chr5 (9-70)||(38437477-38437538)
chr5 (99-147)||(6457727-6457775)
[»] chr4 (17 HSPs)
chr4 (14-215)||(890390-890587)
chr4 (17-189)||(43342543-43342709)
chr4 (90-193)||(28043988-28044085)
chr4 (1-63)||(890587-890649)
chr4 (1-58)||(23723250-23723307)
chr4 (9-61)||(28043862-28043914)
chr4 (9-61)||(43342714-43342766)
chr4 (12-58)||(32951424-32951470)
chr4 (12-58)||(42547429-42547475)
chr4 (106-152)||(27925362-27925408)
chr4 (12-58)||(27925424-27925470)
chr4 (247-288)||(54578358-54578399)
chr4 (106-152)||(23723323-23723369)
chr4 (106-152)||(32951362-32951408)
chr4 (106-152)||(42547491-42547537)
chr4 (17-75)||(28043919-28043979)
chr4 (155-195)||(50142255-50142295)
[»] chr6 (19 HSPs)
chr6 (13-191)||(11172522-11172705)
chr6 (14-218)||(18999325-18999523)
chr6 (9-152)||(31834131-31834272)
chr6 (91-193)||(17436675-17436779)
chr6 (9-61)||(17436862-17436914)
chr6 (9-70)||(6940370-6940431)
chr6 (1-63)||(18999523-18999585)
chr6 (12-58)||(3100962-3101008)
chr6 (12-58)||(8770354-8770400)
chr6 (12-58)||(30125461-30125507)
chr6 (104-196)||(31135820-31135912)
chr6 (13-76)||(17436796-17436861)
chr6 (140-196)||(23770639-23770695)
chr6 (141-208)||(6940463-6940530)
chr6 (247-286)||(6941462-6941501)
chr6 (106-152)||(8770416-8770462)
chr6 (1-38)||(11172466-11172503)
chr6 (9-77)||(23770549-23770615)
chr6 (106-146)||(30125405-30125445)
[»] chr2 (19 HSPs)
chr2 (13-196)||(27451176-27451358)
chr2 (90-196)||(8423338-8423442)
chr2 (99-196)||(8371480-8371575)
chr2 (99-196)||(17474105-17474198)
chr2 (1-63)||(8423513-8423575)
chr2 (1-70)||(16749696-16749765)
chr2 (9-76)||(17474047-17474114)
chr2 (9-61)||(27451359-27451411)
chr2 (12-58)||(22416875-22416921)
chr2 (12-58)||(34899596-34899642)
chr2 (134-189)||(16749791-16749846)
chr2 (12-58)||(30357103-30357149)
chr2 (12-58)||(37575726-37575772)
chr2 (9-77)||(5708503-5708571)
chr2 (106-152)||(22416937-22416983)
chr2 (106-152)||(30357041-30357087)
chr2 (106-152)||(34899658-34899704)
chr2 (106-152)||(37575664-37575710)
chr2 (14-75)||(8423452-8423513)
[»] chr3 (20 HSPs)
chr3 (17-191)||(52498428-52498596)
chr3 (90-193)||(53592763-53592866)
chr3 (9-77)||(45222748-45222816)
chr3 (9-61)||(52498601-52498653)
chr3 (10-61)||(53592639-53592690)
chr3 (12-58)||(12025993-12026039)
chr3 (12-58)||(39085156-39085202)
chr3 (17-58)||(48432973-48433014)
chr3 (9-77)||(15042265-15042333)
chr3 (12-58)||(4774255-4774301)
chr3 (106-152)||(26829486-26829532)
chr3 (17-74)||(53592695-53592752)
chr3 (140-199)||(21515035-21515094)
chr3 (106-152)||(4774317-4774363)
chr3 (94-148)||(14609479-14609533)
chr3 (106-152)||(39085218-39085264)
chr3 (106-152)||(48433030-48433076)
chr3 (169-197)||(7042900-7042928)
chr3 (104-152)||(15042222-15042270)
chr3 (9-77)||(21810733-21810801)
[»] chr8 (19 HSPs)
chr8 (13-186)||(37781276-37781450)
chr8 (9-189)||(37674856-37675033)
chr8 (13-161)||(39919046-39919196)
chr8 (1-58)||(232250-232307)
chr8 (1-58)||(708661-708718)
chr8 (1-58)||(745873-745930)
chr8 (1-58)||(869768-869825)
chr8 (9-61)||(37781223-37781275)
chr8 (9-61)||(39918993-39919045)
chr8 (12-58)||(2834-2880)
chr8 (12-58)||(31627816-31627862)
chr8 (1-77)||(21469150-21469226)
chr8 (9-77)||(36700894-36700962)
chr8 (166-208)||(36701007-36701049)
chr8 (155-208)||(13248536-13248589)
chr8 (12-77)||(14050698-14050763)
chr8 (106-152)||(2772-2818)
chr8 (106-152)||(31627754-31627800)
chr8 (12-58)||(33365265-33365311)
[»] chr1 (29 HSPs)
chr1 (90-196)||(39330669-39330775)
chr1 (90-190)||(38035979-38036079)
chr1 (13-128)||(14293508-14293619)
chr1 (9-58)||(39330853-39330902)
chr1 (134-222)||(15837043-15837131)
chr1 (12-58)||(8059279-8059325)
chr1 (12-58)||(14795702-14795748)
chr1 (12-58)||(14804576-14804622)
chr1 (12-58)||(21968992-21969038)
chr1 (106-152)||(29030881-29030927)
chr1 (12-58)||(40709820-40709866)
chr1 (12-58)||(51251044-51251090)
chr1 (17-58)||(19584852-19584893)
chr1 (1-58)||(29030808-29030865)
chr1 (18-58)||(50050075-50050115)
chr1 (14-77)||(15573244-15573307)
chr1 (9-76)||(15836918-15836985)
chr1 (12-58)||(31200364-31200410)
chr1 (9-61)||(38036160-38036212)
chr1 (106-152)||(14795640-14795686)
chr1 (106-152)||(14804514-14804560)
chr1 (106-152)||(19584909-19584955)
chr1 (106-152)||(31200426-31200472)
chr1 (114-152)||(40709758-40709796)
chr1 (106-152)||(51251106-51251152)
chr1 (9-70)||(13488904-13488965)
chr1 (155-208)||(19263686-19263739)
chr1 (1-50)||(19864544-19864593)
chr1 (140-196)||(10788952-10789007)
[»] scaffold0123 (2 HSPs)
scaffold0123 (13-193)||(26857-27040)
scaffold0123 (9-61)||(26804-26856)
[»] scaffold0017 (3 HSPs)
scaffold0017 (13-149)||(28239-28374)
scaffold0017 (9-61)||(28375-28427)
scaffold0017 (154-191)||(28209-28246)
[»] scaffold0001 (2 HSPs)
scaffold0001 (12-58)||(397266-397312)
scaffold0001 (106-152)||(397328-397374)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32538400 - 32538616
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||              |||||||||||    
T  32538400 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattatacatgatttataacca-----tttttttttaaagaaagatt 32538494  T
Q  101 ataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  32538495 ataaccaaaacctttgttattctccttcctccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgggtc 32538594  T
Q  201 tcgttttatcaaaaatccatta 222  Q
    |  ||||| |||||| ||||||    
T  32538595 tgattttaccaaaaacccatta 32538616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 37632818 - 37632634
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagatt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||            | |||||||||    
T  37632818 actctaacatgttttgattttcaatatagaggatgtgttatgtcaattttaaaaattagacatgatttataaccaaa-actttttttttatagaaagatt 37632720  T
Q  101 ataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagttt 186  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||||| || |||||||| ||||    
T  37632719 ataaccaaaacctttgttcttctccttcctccctatgaaaatgtaaataaaaataaaaatatgaatattttttggtaagtgggttt 37632634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 3407575 - 3407401
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 112  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||||||||              ||||||||||||||||||||||     
T  3407575 tttgattttcaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataacca------ttatttttaaagaaagattataaccaaaacg 3407482  T
Q  113 tttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 193  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| | |||||| |||||||||||    
T  3407481 tttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaaaattattcgataagtgggtttattgggt 3407401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 28363241 - 28363412
Alignment:
Q  18 ttttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttgt 117  Q
    |||| |||||||||||| |||| |||||||||| |||||||||| ||||||||||||||             |||||||||||||||||| ||||||||     
T  28363241 tttttaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataaccaa----tttttttttaaagaaagattataaccataacctttga 28363336  T
Q  118 tattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 193  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||    
T  28363337 tattctccttcgtccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttattgggt 28363412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 3937272 - 3937403
Alignment:
Q  90 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||    
T  3937272 aaagaaagattataactaaaacatttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatt 3937371  T
Q  190 gggtttgaatctcgttttatcaaaaatccatt 221  Q
    |||| ||| ||| |||||| | |||| |||||    
T  3937372 gggtatgagtcttgttttacccaaaacccatt 3937403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 16279754 - 16279847
Alignment:
Q  100 tataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 193  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||  ||| |||||||||||| |||||||| |||||| ||||| |||||    
T  16279754 tataaccaaaacctttgttattctccttcctccctgtgaaaatgaaaacgaaaataaaaatatgaacattattggataagtgggtttaatgggt 16279847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 32538687 - 32538770
Alignment:
Q  301 ataggtttgacggattttttgagttgacccaacccatttacatctctaccctaccctgaactttataatttagtatccccaacaacaac 389  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||      ||||||||||||||||||||||||||||||||    
T  32538687 ataggtttgacgggttttttgagttgacccaacccatatacatctctacccc-----gaactttataatttagtatccccaacaacaac 32538770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 44959660 - 44959832
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 112  Q
    |||||||||||||||||||||| | |  |||||||||| |||||||||| ||||||||||||||             |||||||||||||||||||||||    
T  44959660 tttgattttcaatatagaggatctatg-tgtcaatttttgaaattagacttgatttataaccaa--tttttttttttaaagaaagattataaccaaaacc 44959756  T
Q  113 tttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattg 190  Q
    |||||||||||||||| ||  | |||||||||||||  || ||||||||  || | |||| |||||||| ||||||||    
T  44959757 tttgttattctccttcctctttgtgaaaatgaaaat--aattaaaaatagaaacaatatttggtaagtgggtttattg 44959832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 44959607 - 44959659
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44959607 atgttttgattttcaatatagaggatgtgttgtgtcaattttagaaattagac 44959659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 3407626 - 3407576
Alignment:
Q  11 gttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3407626 gttttgattttcaatatagaggatgtgttgtgtcaattttagaaattagac 3407576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 25981384 - 25981458
Alignment:
Q  3 tctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    ||||| ||||||||||||||||||||||| |||  || ||||||||||| ||||||||| |||||||| ||||||    
T  25981384 tctaacatgttttgattttcaatatagagaatgctttttgtcaattttaaaaattagacttgatttatgaccaaa 25981458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 36107489 - 36107535
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  36107489 ttttaattttcaatatagaggatgtgttatgtcaattttagaaatta 36107535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 16279582 - 16279634
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||||||||    
T  16279582 atgttttgattttcaatatagatgatgtgttgtatcaattttagaaattagac 16279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 24954676 - 24954722
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  24954676 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 24954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 41987150 - 41987189
Alignment:
Q  19 tttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  41987150 tttcaatatagaggatgtgttgtgtcaattttagaaatta 41987189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 3936964 - 3937010
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaa 55  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||    
T  3936964 atgttttgattttcaatatagaggatgtattgtgtcaactttagaaa 3937010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 16279635 - 16279697
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataacca 75  Q
    ||||||||||||| | |||||| |||| |||||||||| | |||||||| |||||||||||||    
T  16279635 tttgattttcaatgtcgaggatttgttgtgtcaatttttgtaattagacttgatttataacca 16279697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 40210322 - 40210276
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||||    
T  40210322 tttttattttcaatatagaggatatgttgtgtcaattttagaaatta 40210276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 41987205 - 41987251
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||    
T  41987205 caaaacatttgttattcttcttcttccctatgaaaatgaaattaaaa 41987251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33130712 - 33130771
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattaga 60  Q
    ||||||| ||||| |||||||||||||||| ||||| || || ||||||| |||||||||    
T  33130712 actctaacatgttatgattttcaatatagatgatgtcttgtgccaatttttgaaattaga 33130771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 36107551 - 36107597
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  36107551 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 36107597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 37451977 - 37451923
Alignment:
Q  156 aaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatc 210  Q
    ||||||| || ||||||| ||||||| |||| |||||||||||||| ||||||||    
T  37451977 aaaatattaacattattgagtaagtgggttttttgggtttgaatctggttttatc 37451923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 40210260 - 40210214
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  40210260 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 40210214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 37632525 - 37632488
Alignment:
Q  305 gtttgacggattttttgagttgacccaacccatttaca 342  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  37632525 gtttgacggattttttgggttgacccaacccatataca 37632488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 3937197 - 3937256
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataac 73  Q
    |||||||||||| ||| || || |||| |||||||||| |||||||||| |||||||||||    
T  3937197 tttgattttcaaaata-agaatttgttgtgtcaatttttgaaattagacttgatttataac 3937256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 12342268 - 12342332
Alignment:
Q  6 aatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 70  Q
    |||||||||||||||| |||||| || |||  || ||||||||||| |||||| || ||||||||    
T  12342268 aatatgttttgattttgaatataaagaatgccttttgtcaattttaaaaattaaacttgatttat 12342332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 25981488 - 25981544
Alignment:
Q  154 taaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatc 210  Q
    |||||||||  | |||||||| |||||||||||||| ||||||| ||| ||||||||    
T  25981488 taaaaatattgacattattggataagtgagtttatttggtttgagtctggttttatc 25981544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14634415 - 14634632
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagatt 100  Q
    ||||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||            |||||||||||    
T  14634415 actctaacatattttgattttcaatataaatgatgtgttatgtcaattttagaaattagacttgatttataaccaaaactttttttttaaaagaaagatt 14634514  T
Q  101 ataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatc 200  Q
    ||||| |||||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  14634515 ataactaaaacctttgttcttctccttcctccccatgaaaatgaaaataaaaataaaaatatgaatattgttgggtaagtgggtttattgggtttgagtc 14634614  T
Q  201 tcgttttatcaaaaatcc 218  Q
    | |||||| | |||||||    
T  14634615 tagttttacccaaaatcc 14634632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 40484653 - 40484867
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataacc-aaacnnnnnnnnnnnaaagaaagat 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||           ||||||||||    
T  40484653 actctaagatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacttgatttataaccaaaactttttttttttaaagaaagat 40484752  T
Q  100 tataaccaaaacctttgttattctccttcttccctatgaaaatg------aaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 193  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||      ||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  40484753 tataaccaaaacctttgttcttctccttccttcctatgaaaatgaaaataaaaataaaaataaaaatatgaatattattgggtaagtaggtttattgggt 40484852  T
Q  194 ttgaatctcgtttta 208  Q
    |||| ||| ||||||    
T  40484853 ttgagtctagtttta 40484867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 10540577 - 10540680
Alignment:
Q  90 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||    
T  10540577 aaagaaagattataaccaaaatctttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatt 10540676  T
Q  190 gggt 193  Q
    ||||    
T  10540677 gggt 10540680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 35667553 - 35667379
Alignment:
Q  14 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacct 113  Q
    ||||||||||||||||||||| | || |||||| |||||||||||||| |||||||||||||              ||||||||||||||||||||| ||    
T  35667553 ttgattttcaatatagaggatttattgtgtcaaatttagaaattagacttgatttataacca-----ttttattttaaagaaagattataaccaaaagct 35667459  T
Q  114 ttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 196  Q
    ||||||||||||||| |||||||| |||||||||| ||   ||||| ||||| ||||||||||||||| ||||||||||||||    
T  35667458 ttgttattctccttcctccctatgtaaatgaaaatgaa---aaaaaaatgaacattattgggtaagtgggtttattgggtttg 35667379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 26363119 - 26363283
Alignment:
Q  17 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttg 116  Q
    |||||||||||||||||| |||| ||| |||||| |||||||||| |||||||||||||              |||||||||||||||||||||  ||||    
T  26363119 attttcaatatagaggatttgttgtgttaatttttgaaattagacttgatttataacca------ttttatttaaagaaagattataaccaaaatttttg 26363212  T
Q  117 ttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 193  Q
    |||||||||||| ||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||    
T  26363213 ttattctccttcctccctatgaaaatgaaaa------taaaaatatgaacattattgggtaagtgagtttattgggt 26363283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 34696842 - 34696962
Alignment:
Q  91 aagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattg 190  Q
    |||||||||||||||||||||||||||||||||||||| | | | ||||||||||||      ||||||||| || ||||||||||||||||||||||||    
T  34696842 aagaaagattataaccaaaacctttgttattctccttcct-cttgtgaaaatgaaaa------taaaaatattaacattattgggtaagtgagtttattg 34696934  T
Q  191 ggtttgaatctcgttttatcaaaaatcc 218  Q
    | |||| |||| |||||| | |||||||    
T  34696935 gatttggatctggttttacccaaaatcc 34696962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35667615 - 35667553
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacat 63  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  35667615 actctaacatgtttttattttcaatatagaggatgtgttgtgtcaattttagaaattagacat 35667553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9888973 - 9888916
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9888973 actctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 9888916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 10540452 - 10540504
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  10540452 atgttttgattttcaatatagaggatgtgttgtgtcaattttaaaaattagac 10540504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 26363062 - 26363114
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  26363062 atgttttgattttcaatatagaggatgtgttttgtcaatttaagaaattagac 26363114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 41359370 - 41359462
Alignment:
Q  116 gttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 208  Q
    ||||||||| ||| ||||||||||||||||||||||| |  ||||||||||||||| ||| || || ||||||||||| ||| ||| ||||||    
T  41359370 gttattctctttcctccctatgaaaatgaaaataaaaatgtaaatatgaatattatcgggaaaatgggtttattgggtatgagtctggtttta 41359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 41359224 - 41359273
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  41359224 ttttgattttcaatatagaggatgtgttttgtctattttagaaattagac 41359273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 16049104 - 16049150
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  16049104 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 16049150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7871454 - 7871523
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 70  Q
    |||||| |||||||||| ||||||||||| | |||| || ||||||||||| ||||||||| ||||||||    
T  7871454 actctagtatgttttgaatttcaatatagcgaatgtcttttgtcaattttaaaaattagacttgatttat 7871523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 34696764 - 34696825
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaa 76  Q
    |||||||||||||||||  ||| |||| |||||||||| |||||||||| ||||||||||||||    
T  34696764 tttgattttcaatatag--gatttgttgtgtcaatttttgaaattagacttgatttataaccaa 34696825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 41359274 - 41359338
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    |||||||||||||||||| ||| | || ||||||||||  ||||||||| |||||||||||||||    
T  41359274 tttgattttcaatatagatgatttattgtgtcaattttttaaattagacttgatttataaccaaa 41359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 10540509 - 10540564
Alignment:
Q  17 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataa 72  Q
    |||||||||||||||||| |||| ||||||||||  ||||||||| ||||||||||    
T  10540509 attttcaatatagaggatttgttgtgtcaatttttaaaattagacttgatttataa 10540564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 23928119 - 23928073
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  23928119 tttttattttcaatatagaggatgtggtgtgtcaattttagaaatta 23928073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 6010644 - 6010591
Alignment:
Q  155 aaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 208  Q
    |||||||| || ||||||||||||||| |||| |||||||||||||| ||||||    
T  6010644 aaaaatattaacattattgggtaagtgggttttttgggtttgaatctggtttta 6010591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 29289654 - 29289613
Alignment:
Q  17 attttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  29289654 attttcaatatagaggatgtgttgtgttaattttagaaatta 29289613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 9888900 - 9888854
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  9888900 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 9888854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 29289597 - 29289551
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  29289597 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 29289551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 34696711 - 34696763
Alignment:
Q  12 ttttgattttcaatatagagga---tgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||| ||   |||||| |||||||||||||||||||||    
T  34696711 ttttgattttcaatatagaagaagatgtgttgtgtcaattttagaaattagac 34696763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 4421711 - 4421752
Alignment:
Q  155 aaaaatatgaatattattgggtaagtgagtttattgggtttg 196  Q
    |||||||| || |||||||||||||||||||| |||||||||    
T  4421711 aaaaatattaacattattgggtaagtgagttttttgggtttg 4421752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 38437538 - 38437477
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 70  Q
    |||||||||||||||||||| | ||||| || |||||||||| ||||| |||| | ||||||    
T  38437538 atgttttgattttcaatatataagatgttttgtgtcaattttggaaatgagacttaatttat 38437477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 6457727 - 6457775
Alignment:
Q  99 ttataaccaaaacctttgttattctccttcttccctatgaaaatgaaaa 147  Q
    |||| |||||||||||||  ||||||||| |||||||||||||| ||||    
T  6457727 ttatgaccaaaacctttggcattctccttattccctatgaaaataaaaa 6457775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 890587 - 890390
Alignment:
Q  14 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacct 113  Q
    ||||||||||||||||||||| | |  |||||| |||||||||||||| |||||||||||||              ||||||||||||||||||||| ||    
T  890587 ttgattttcaatatagaggatttatagtgtcaaatttagaaattagacttgatttataacca-----ttttttttaaaagaaagattataaccaaaagct 890493  T
Q  114 ttgttattctccttcttccctatgaaaatgaaaat-aaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatcaa 212  Q
    ||||||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||| |||  ||||||| |    
T  890492 ttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaaaattatgaatattattgggtaagtgagtttattgggtttgagtctgattttatcca 890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 43342709 - 43342543
Alignment:
Q  17 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttg 116  Q
    ||||||||||||||| || |||| |||||||||| |||||||||| |||||||||||||              ||||||||||||||||||||| || ||    
T  43342709 attttcaatatagagaatttgttgtgtcaatttttgaaattagacttgatttataacca------tttttttaaaagaaagattataaccaaaatctctg 43342616  T
Q  117 ttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||    
T  43342615 ttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatt 43342543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 28043988 - 28044085
Alignment:
Q  90 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||       ||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  28043988 aaagaaagtttataaccaaaacctttgttattctacttcctccct------gtgaaaataaaaataaaaatatgaacattattgggtaagtgggtttatt 28044081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 890649 - 890587
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacat 63  Q
    ||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  890649 actctaacatgtttttattttcaatatagaggatgtgctgtgtcaattttagaaattagacat 890587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23723250 - 23723307
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  23723250 actctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 23723307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 28043862 - 28043914
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  28043862 atgttttgattttcaatatagaggatatgttgtgtcaattttaaaaattagac 28043914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 43342766 - 43342714
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  43342766 atgttttgattttcaatatagaggatgtgttgtgtagattttagaaattagac 43342714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 32951470 - 32951424
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  32951470 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 32951424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 42547429 - 42547475
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  42547429 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 42547475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 27925408 - 27925362
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||    
T  27925408 caaaacatttgttattcttcttcttccctatgaaaatgaaattaaaa 27925362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 27925470 - 27925424
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  27925470 tttttatttttaatatagaggatgtgttgtgtcaattttagaaatta 27925424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 54578399 - 54578358
Alignment:
Q  247 aaaaccatatctacccaatcacccaaccgaatccacttttct 288  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  54578399 aaaaccatatctacccaatcatccaacccaatccacttttct 54578358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 23723323 - 23723369
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  23723323 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 23723369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 32951408 - 32951362
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  32951408 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 32951362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 42547491 - 42547537
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  42547491 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 42547537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 28043919 - 28043979
Alignment:
Q  17 attttcaatatagag--gatgtgttatgtcaattttagaaattagacatgatttataacca 75  Q
    |||||||||||||||  ||| |||| ||||||||||  ||||||||| |||||||||||||    
T  28043919 attttcaatatagagaggatttgttgtgtcaattttttaaattagacttgatttataacca 28043979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 50142255 - 50142295
Alignment:
Q  155 aaaaatatgaatattattgggtaagtgagtttattgggttt 195  Q
    |||||||| || |||||||||||||||||||| ||||||||    
T  50142255 aaaaatattaacattattgggtaagtgagttttttgggttt 50142295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 11172522 - 11172705
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 112  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||            |||||||||||||||||||||||    
T  11172522 tttgattttcaatatagaggatgtgttgtatcaattttagaaattagacttgatttataacaaaa-acatatttttaaaagaaagattataaccaaaacc 11172620  T
Q  113 tttgttattctccttcttccct------atgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgg 191  Q
    |||||||||||||||| |||||      |||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  11172621 tttgttattctccttcctccctatgagaatgagaatgaaaataaaaataaaaatatgaacattattgggtaagtaagtttattgg 11172705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 18999523 - 18999325
Alignment:
Q  14 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacct 113  Q
    |||||||||||||||||||||   || |||||| |||||||||||||| ||||||||||||               ||||||||||||||||| ||| ||    
T  18999523 ttgattttcaatatagaggattcattgtgtcaaatttagaaattagacttgatttataacc------tttttttttaaagaaagattataacctaaagct 18999430  T
Q  114 ttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatcaaa 213  Q
    ||||||||||||||| ||||||||||||||||||| |||  ||| ||||||| ||||||||||||||| ||||||||||||||  ||| |||||| | ||    
T  18999429 ttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaatatatgaacattattgggtaagtgggtttattgggtttgggtctggttttacccaa 18999330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 31834272 - 31834131
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaa 108  Q
    ||||||||||||||||||||||| || ||||||||||||| | |||||||||| ||||||||||||||             ||||||||||||||| |||    
T  31834272 atgttttgattttcaatatagagaatttgttatgtcaattgttgaaattagacttgatttataaccaa--tttttttttttaaagaaagattataatcaa 31834175  T
Q  109 aacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  31834174 aacctttgttattctccttcctccctatgaaaatgaaaataaaa 31834131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 17436779 - 17436675
Alignment:
Q  91 aagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaat---aaaagtaaaaatatgaatattattgggtaagtgagttta 187  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||   ||||  | ||||||||| ||||||  ||||||| |||||    
T  17436779 aagaaagattataaccaaaacttttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaaataaatatgaacattatt-tgtaagtgggttta 17436681  T
Q  188 ttgggt 193  Q
    ||||||    
T  17436680 ttgggt 17436675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 17436914 - 17436862
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17436914 atgttttgattttcaatatagaggatgtgttgtgtcaattttagaaattagac 17436862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 6940370 - 6940431
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 70  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||  |||||||    
T  6940370 atgttttgattttcaataaagaggatgtgttgtgtcaattttagaaattagactagatttat 6940431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18999585 - 18999523
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacat 63  Q
    ||||||| ||||||| |||||||||| |||||||||||| | |||||||||||||||||||||    
T  18999585 actctaacatgtttttattttcaatacagaggatgtgttgtatcaattttagaaattagacat 18999523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 3100962 - 3101008
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3100962 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 3101008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 8770354 - 8770400
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  8770354 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 8770400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 30125507 - 30125461
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  30125507 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 30125461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 31135820 - 31135912
Alignment:
Q  104 accaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 196  Q
    ||||||| ||||| ||||| |||||||   ||||||||| ||||||||| |||||||  |  |||||||||||| |||| |||||||||||||    
T  31135820 accaaaatctttggtattccccttcttttttatgaaaataaaaataaaaataaaaatgcgggtattattgggtacgtgattttattgggtttg 31135912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 17436861 - 17436796
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaatt--agacatgatttataaccaa 76  Q
    ||||||||||||||||||| || |||| |||||||||| ||||||  |||| ||||||||||||||    
T  17436861 tttgattttcaatatagagaatttgttgtgtcaatttttgaaattagagacttgatttataaccaa 17436796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 23770639 - 23770695
Alignment:
Q  140 aatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 196  Q
    ||||||||||||| ||||||| |    ||||||||||||||||||||||||||||||    
T  23770639 aatgaaaataaaaataaaaatgttggcattattgggtaagtgagtttattgggtttg 23770695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 6940463 - 6940530
Alignment:
Q  141 atgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 208  Q
    |||||||| ||| |||||||||  | ||||||||||||||| ||||||||||| ||| ||| ||||||    
T  6940463 atgaaaatgaaaataaaaatatagacattattgggtaagtgggtttattgggtctgagtctggtttta 6940530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 6941462 - 6941501
Alignment:
Q  247 aaaaccatatctacccaatcacccaaccgaatccactttt 286  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  6941462 aaaaccatatccacccaatcacccaacccaatccactttt 6941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 8770416 - 8770462
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  8770416 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 8770462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11172466 - 11172503
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgt 38  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  11172466 actctaacatgttttgatttttaatatagaggatgtgt 11172503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 23770549 - 23770615
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    |||||||||||||||||||||||  ||| || ||||||||||  ||||||||| |||||| | ||||||    
T  23770549 atgttttgattttcaatatagag--tgtcttttgtcaattttgaaaattagacttgatttgtgaccaaa 23770615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 30125445 - 30125405
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaa 146  Q
    |||||| ||||||||||| |||| |||||||||||||||||    
T  30125445 caaaacatttgttattcttcttcctccctatgaaaatgaaa 30125405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 27451358 - 27451176
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 112  Q
    |||||||||||||| ||||||| |||| ||||||||||  ||||||||| ||||||||||||||             ||||||||||||||||||||| |    
T  27451358 tttgattttcaatacagaggatttgttgtgtcaattttttaaattagacttgatttataaccaat-tatttttttttaaagaaagattataaccaaaatc 27451260  T
Q  113 tttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 196  Q
    |||||||||||||||| ||| ||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||| ||||||    
T  27451259 tttgttattctccttcctccgtatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatttggtttg 27451176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 8423442 - 8423338
Alignment:
Q  90 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||  ||||| || || ||||||||||||||| |||||||    
T  8423442 aaagaaagattataaccaaaatctttgttattctccttcctccctatgaaaatgaaaatgaaa--aaaaaaataaacattattgggtaagtgggtttatt 8423345  T
Q  190 gggtttg 196  Q
    |||||||    
T  8423344 gggtttg 8423338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 8371575 - 8371480
Alignment:
Q  99 ttataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 196  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||  ||||| || || ||||||||||||||| ||||||||||||||    
T  8371575 ttataaccaaaatctttgttattctccttcctccctatgaaaatgaaaatgaaa--aaaaaaataaacattattgggtaagtgggtttattgggtttg 8371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 17474105 - 17474198
Alignment:
Q  99 ttataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 196  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||| |||||    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  17474105 ttatgaccaagacctttgttattctccttcctccctatgaaaatgataataa----aaaaatacgaacattattgggtaagtgggtttattgggtttg 17474198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8423575 - 8423513
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacat 63  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  8423575 actctaacatgtttttattttcaatatagaggatgtgttgtgtcaattttagaaattagacat 8423513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16749696 - 16749765
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 70  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||    
T  16749696 actctaacatgttttgattttcaatatagagaatgtgttgtgtcaattttagaaattagacttaatttat 16749765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 17474047 - 17474114
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaa 76  Q
    |||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||||||| |||||    
T  17474047 atgttttgattttcaatacagaggatgtcttgtgtcaattttagaaattagacttgatttatgaccaa 17474114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 27451411 - 27451359
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  27451411 atgttttgattttcaatatagagaatgtgttgtgtcaattttagaaatcagac 27451359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 22416875 - 22416921
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  22416875 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 22416921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 34899596 - 34899642
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  34899596 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 34899642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 16749791 - 16749846
Alignment:
Q  134 tatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    ||||||||||||||||||| ||||| |||||| |||||| | ||||||||||||||    
T  16749791 tatgaaaatgaaaataaaaataaaattatgaacattatttgataagtgagtttatt 16749846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 30357149 - 30357103
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  30357149 tttttattttcaatatagaggatgtgttgtgtcaatcttagaaatta 30357103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 37575772 - 37575726
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  37575772 tttttattttcaatatagaggatgtgttgtgtcaattttaaaaatta 37575726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 5708503 - 5708571
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    |||||||||||||| |||| || ||||| || ||| ||||||||||||||||| | |||||| ||||||    
T  5708503 atgttttgattttcgatatggatgatgtcttgtgttaattttagaaattagacttaatttatgaccaaa 5708571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 22416937 - 22416983
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  22416937 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 22416983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 30357087 - 30357041
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  30357087 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 30357041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 34899658 - 34899704
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  34899658 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 34899704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 37575710 - 37575664
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  37575710 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 37575664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 8423513 - 8423452
Alignment:
Q  14 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataacca 75  Q
    ||||||||||||||||| ||| | || |||||| ||||||| |||||| || ||||||||||    
T  8423513 ttgattttcaatatagatgatttattgtgtcaaatttagaagttagacttggtttataacca 8423452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 52498596 - 52498428
Alignment:
Q  17 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttg 116  Q
    |||||||||||||||||| |||| |||||||||| |||||||||| |||||||||||||              ||||||||||||||||||||| |||||    
T  52498596 attttcaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataacca------ttttttttaaagaaagattataaccaaaatctttg 52498503  T
Q  117 ttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgg 191  Q
    |||||||||||| ||||||||||||||||||| ||| | |||||||||| |||||||| |||||| |||||||||    
T  52498502 ttattctccttcctccctatgaaaatgaaaattaaaattaaaatatgaacattattggataagtgggtttattgg 52498428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 53592763 - 53592866
Alignment:
Q  90 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||    
T  53592763 aaagaaagattataaccaaaatctttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatt 53592862  T
Q  190 gggt 193  Q
    ||||    
T  53592863 gggt 53592866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 45222748 - 45222816
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45222748 atgttttgattttcaatatagagaatgtgttatgtcaattttagaaattagacatgatttataaccaaa 45222816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 52498653 - 52498601
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52498653 atgttttgattttcaatatagaggatgtgttgtgtcaattttagaaattagac 52498601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 53592639 - 53592690
Alignment:
Q  10 tgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53592639 tgttttgattttcaatatagaggatgtgttgtgtcaattttagaaattagac 53592690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 12025993 - 12026039
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||    
T  12025993 ttttaattttcaatatagaggctgtgttatgtcaattttagaaatta 12026039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 39085156 - 39085202
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  39085156 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 39085202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 48432973 - 48433014
Alignment:
Q  17 attttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  48432973 attttcaatatagaggatgtgttgtgtcaattttagaaatta 48433014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 15042333 - 15042265
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    ||||||||||||||||||||||| |||| || ||||||||||  ||||||||| |||||| | ||||||    
T  15042333 atgttttgattttcaatatagagaatgtcttttgtcaattttgaaaattagacttgatttgtgaccaaa 15042265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 4774255 - 4774301
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||    
T  4774255 tttttattttcaatatagaggatgtgttttgtcaattttaggaatta 4774301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 26829486 - 26829532
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  26829486 caaaacctttgctattctccttctttcctatgaaaataaaaataaaa 26829532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 53592695 - 53592752
Alignment:
Q  17 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataacc 74  Q
    |||||||||||| ||||| |||| |||||||||| ||||||| || ||||||||||||    
T  53592695 attttcaatataaaggatttgttgtgtcaatttttgaaattaaacttgatttataacc 53592752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 21515094 - 21515035
Alignment:
Q  140 aatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaat 199  Q
    ||||||||||||| ||||||| |   ||||||||| ||||||||||||||||| ||||||    
T  21515094 aatgaaaataaaaataaaaatgttggtattattggataagtgagtttattgggattgaat 21515035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 4774317 - 4774363
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  4774317 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 4774363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 14609533 - 14609479
Alignment:
Q  94 aaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaat 148  Q
    ||||||||| |||||||  |||| ||||||||||||||| ||||||||| |||||    
T  14609533 aaagattatgaccaaaatttttggtattctccttcttccatatgaaaataaaaat 14609479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 39085218 - 39085264
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  39085218 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 39085264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 48433030 - 48433076
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  48433030 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 48433076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 7042900 - 7042928
Alignment:
Q  169 tattgggtaagtgagtttattgggtttga 197  Q
    |||||||||||||||||||||||||||||    
T  7042900 tattgggtaagtgagtttattgggtttga 7042928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 15042270 - 15042222
Alignment:
Q  104 accaaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    ||||||| ||||  |||||||||||||||| |||||||| |||||||||    
T  15042270 accaaaatcttttgtattctccttcttcccaatgaaaataaaaataaaa 15042222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 21810801 - 21810733
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    |||||||||||||  ||||||||| ||| || ||| |||||| |||| ||||| |||||||| ||||||    
T  21810801 atgttttgatttttgatatagaggttgtcttgtgttaattttcgaaagtagacttgatttatgaccaaa 21810733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 37781276 - 37781450
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnn-aaagaaagattataaccaaaac 111  Q
    |||||||||||||||||||||| |||| | |||||||| |||||||||| ||||||||||||||              ||||||||||||||| ||||||    
T  37781276 tttgattttcaatatagaggatttgttgtatcaatttttgaaattagacttgatttataaccaatttatattttttttaaagaaagattataatcaaaac 37781375  T
Q  112 ctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagttt 186  Q
    |||||| |||||||||| ||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||    
T  37781376 ctttgtcattctccttcctccctatgaaaatgaaaatgaaaataaaaatacgaacattattgggtaagtgagttt 37781450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 37675033 - 37674856
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaa 108  Q
    ||||||||||||||||||||||| || |||||  |||||| | |||||||||| ||||||||||||||             ||||||||||||||| |||    
T  37675033 atgttttgattttcaatatagagaatttgttacttcaattgttgaaattagacttgatttataaccaa---ttttttttttaaagaaagattataatcaa 37674937  T
Q  109 aacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||| |||||||| ||||||| ||||||    
T  37674936 aacctttgttattctccttcctccctatgaaaatgaaaatgaaaataaaattatgaacattattggataagtgaatttatt 37674856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 39919046 - 39919196
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaa---acnnnnnnnnnnnaaagaaagattataaccaaa 109  Q
    |||||||||||||||||||||| |||| | |||||||| |||||||||| ||||||||||||||   |             || ||||||||||||||||    
T  39919046 tttgattttcaatatagaggatttgttgtatcaatttttgaaattagacttgatttataaccaatttatatatttttttttaa-aaagattataaccaaa 39919144  T
Q  110 acctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaata 161  Q
    |||||||| |||||||||| ||||||||||||||||||| ||| ||||||||    
T  39919145 acctttgtcattctccttcctccctatgaaaatgaaaatgaaaataaaaata 39919196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 232307 - 232250
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  232307 actctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 232250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 708718 - 708661
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  708718 actctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 708661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 745930 - 745873
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  745930 actctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 745873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 869825 - 869768
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  869825 actctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 37781223 - 37781275
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  37781223 atgttttgattttcaatatagatgatgtgttgtgtcaattttagaaattagac 37781275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 39918993 - 39919045
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  39918993 atgttttgattttcaatatagatgatgtgttgtgtcaattttagaaattagac 39919045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 2880 - 2834
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  2880 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 2834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 31627862 - 31627816
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  31627862 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 31627816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21469150 - 21469226
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    ||||||| |||||||||||||||||||| || |||| || |||||| |||  ||||||||| |||||||| ||||||    
T  21469150 actctaacatgttttgattttcaatataaagaatgtcttttgtcaactttgaaaattagacttgatttatgaccaaa 21469226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 36700894 - 36700962
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    |||||||||||||||||||| || |||| || |||| |||||| ||||||||| |||||||| ||||||    
T  36700894 atgttttgattttcaatataaagaatgtcttttgtcgattttaaaaattagacttgatttatgaccaaa 36700962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 36701007 - 36701049
Alignment:
Q  166 tattattgggtaagtgagtttattgggtttgaatctcgtttta 208  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  36701007 tattattgggtaagtgagtttattggatttgagtctcgtttta 36701049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 13248536 - 13248589
Alignment:
Q  155 aaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 208  Q
    |||||||| || |||||||||||||||||||| |||||||||| ||| ||||||    
T  13248536 aaaaatattaacattattgggtaagtgagttttttgggtttgagtctggtttta 13248589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 14050698 - 14050763
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    |||||||||||||||||||  |||| |  ||||||||||| ||||||||| |||||||| ||||||    
T  14050698 ttttgattttcaatatagataatgtctgttgtcaattttaaaaattagacttgatttatgaccaaa 14050763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 2818 - 2772
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  2818 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 2772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 31627800 - 31627754
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||| ||||||| |||||||||||||||||||||| |||||    
T  31627800 caaaacattttttattcttcttcttccctatgaaaatgaaattaaaa 31627754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 33365311 - 33365265
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| |||||||||||| |||||||||| ||||||||||| ||||||    
T  33365311 tttttattttcaatataaaggatgtgttgtgtcaattttaaaaatta 33365265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 39330775 - 39330669
Alignment:
Q  90 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||| |    
T  39330775 aaagaaaaattataaccaaaacctttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaaaattattgggtaagtgggtttaat 39330676  T
Q  190 gggtttg 196  Q
    | |||||    
T  39330675 gtgtttg 39330669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 38036079 - 38035979
Alignment:
Q  90 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 189  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||| | ||||||||||||||| |||||||    
T  38036079 aaagaaagattataaccaaaacttttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatggacattattgggtaagtgggtttatt 38035980  T
Q  190 g 190  Q
    |    
T  38035979 g 38035979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 14293619 - 14293508
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 112  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||||||||             ||||||||||||||||| |||||    
T  14293619 tttgattttcaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataaccaa----tttttttttaaagaaagattataaccgaaacc 14293524  T
Q  113 tttgttattctccttc 128  Q
    ||||||||||||||||    
T  14293523 tttgttattctccttc 14293508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 39330902 - 39330853
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39330902 atgttttgattttcaatatagaggatgtgttgtgtcaattttagaaatta 39330853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 15837043 - 15837131
Alignment:
Q  134 tatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatcaaaaatccatta 222  Q
    ||||||||||||||| ||| |||||||||||| |||| ||||||||||| |||||||||| || ||||  ||||| | |||| ||||||    
T  15837043 tatgaaaatgaaaatgaaaataaaaatatgaacattactgggtaagtgaatttattgggtctggatctgattttacccaaaacccatta 15837131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 8059325 - 8059279
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  8059325 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 8059279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 14795748 - 14795702
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  14795748 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 14795702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 14804622 - 14804576
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  14804622 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 14804576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21969038 - 21968992
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  21969038 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 21968992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 29030881 - 29030927
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  29030881 caaaacctttgttattctccttcctccctatgaaaacgaaaataaaa 29030927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 40709866 - 40709820
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  40709866 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 40709820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 51251044 - 51251090
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  51251044 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 51251090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 19584852 - 19584893
Alignment:
Q  17 attttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  19584852 attttcaatatagaggatgtgttgtgtcaattttagaaatta 19584893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29030808 - 29030865
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    ||||||| ||||||||||||| |||||||| |||||||| ||| ||||||||||||||    
T  29030808 actctaacatgttttgatttttaatatagaagatgtgttgtgtgaattttagaaatta 29030865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 50050115 - 50050075
Alignment:
Q  18 ttttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  50050115 ttttcaatatagaggatgtgttgtgtcaattttagaaatta 50050075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 15573244 - 15573307
Alignment:
Q  14 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 77  Q
    |||||||||| ||||||| |||| |||||||||||||  ||||||||| |||||||| ||||||    
T  15573244 ttgattttcagtatagagaatgtcttatgtcaattttgaaaattagacttgatttatgaccaaa 15573307  T

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Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 15836918 - 15836985
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaa 76  Q
    |||||||||||||| |||||||| || |||| ||||||||||  ||| ||||| ||||||||||||||    
T  15836918 atgttttgattttcgatatagagaatttgttgtgtcaatttttcaaactagacttgatttataaccaa 15836985  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 31200364 - 31200410
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||||    
T  31200364 tttttattttcaatatagaggatatgttgtgtcaattttagaaatta 31200410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 38036212 - 38036160
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||| |||||||||||||| ||||| || ||||||||||| |||||||||    
T  38036212 atgttttaattttcaatatagatgatgtattgtgtcaattttaaaaattagac 38036160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 14795686 - 14795640
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  14795686 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 14795640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 14804560 - 14804514
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  14804560 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 14804514  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 19584909 - 19584955
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  19584909 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 19584955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 31200426 - 31200472
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  31200426 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 31200472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 40709796 - 40709758
Alignment:
Q  114 ttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  40709796 ttgttattcttcttcttccctatgaaaatgaaattaaaa 40709758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 51251106 - 51251152
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  51251106 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 51251152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 13488965 - 13488904
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 70  Q
    |||||||||||||||||||| || || | || ||||||||||  ||||||||| ||||||||    
T  13488965 atgttttgattttcaatataaagaatatattttgtcaattttgaaaattagacttgatttat 13488904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 19263739 - 19263686
Alignment:
Q  155 aaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 208  Q
    |||||||| || ||||||||||||||| |||| |||||||||| ||| ||||||    
T  19263739 aaaaatattaacattattgggtaagtgggttttttgggtttgagtctggtttta 19263686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19864593 - 19864544
Alignment:
Q  1 actctaatatgttttgattttcaatatagaggatgtgttatgtcaatttt 50  Q
    ||||||| |||||||||||||||||||| ||| |||||| ||||| ||||    
T  19864593 actctaacatgttttgattttcaatatatagggtgtgttgtgtcagtttt 19864544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 10789007 - 10788952
Alignment:
Q  140 aatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 196  Q
    ||||||||||||| ||||| | ||  |||||||||||||||| ||||||||||||||    
T  10789007 aatgaaaataaaattaaaa-tgtgggtattattgggtaagtgtgtttattgggtttg 10788952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 26857 - 27040
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnn---aaagaaagattataaccaaa 109  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||| || |||||||||||||                 ||||||||||||||||||||    
T  26857 tttgattttcaatatagaggatttgttgtgtcaatttttgaaattatacttgatttataaccactttcttttttttttttaaagaaagattataaccaaa 26956  T
Q  110 acctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 193  Q
    | |||||| |||||||||| || |||||||||||||||| ||| | |||||||||||| ||||||||||||| |||||||||||    
T  26957 atctttgtaattctccttcctcgctatgaaaatgaaaatgaaaatgaaaatatgaatactattgggtaagtgggtttattgggt 27040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 26804 - 26856
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  26804 atgttttgattttaaatatagaggatgtgttgtgtcaattttagaaattagac 26856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 28374 - 28239
Alignment:
Q  13 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 112  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||||||||             |||||||||||||||||||||||    
T  28374 tttgattttcaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataaccaat-ttttcttttttaaagaaagattataaccaaaacc 28276  T
Q  113 tttgttattctccttcttccctatgaaaatgaaaata 149  Q
    |||| ||||||||||| ||||||||||||| ||||||    
T  28275 tttgatattctccttcgtccctatgaaaataaaaata 28239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 28427 - 28375
Alignment:
Q  9 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagac 61  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||||||||    
T  28427 atgttttgattttcaatatagatgatgtgttgtgtcagttttagaaattagac 28375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 28246 - 28209
Alignment:
Q  154 taaaaatatgaatattattgggtaagtgagtttattgg 191  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  28246 taaaaatatgaacattattgggtaagtgggtttattgg 28209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 397266 - 397312
Alignment:
Q  12 ttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 58  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  397266 tttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 397312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 397328 - 397374
Alignment:
Q  106 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 152  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||    
T  397328 caaaacatttgttattcttcttcttccctatgaaaatgaaattaaaa 397374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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