View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_low_1 (Length: 986)
Name: NF20160_low_1
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 713; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 68 - 972
Target Start/End: Original strand, 54302079 - 54302985
Alignment:
| Q |
68 |
gttagtgtgagttcaaatctatccgtgccgttttaatagttattggtgttattcaaaaaatactaatttcatcttctnnnnnnntttagaaggnnnnnnn |
167 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54302079 |
gttagtgtgagttcaaatctatccgtgccgttttaacagttattggtgttattcaaaaaatactaatttcatcttctaaaaaaatttagaaggaaaaaaa |
54302178 |
T |
|
| Q |
168 |
gacactaattgatctttcagagaacatgcacattctagaatacagatcttctctaaatccactcaaacctctaaactaagacagcggattctaatttcac |
267 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||| |
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| T |
54302179 |
gacgctaattgatctttcagagaacatgcacattctagaatacagatcttctctaaacccgctcaaacctctaaactgtgacagcagattctaatttcac |
54302278 |
T |
|
| Q |
268 |
taaaccaagagaactttgaaagagatgaaaagcagaagtccaaatgaaaa--aagttgtaaataatattcacaatttatacaataccacaaaaaggaaga |
365 |
Q |
| |
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||||||||||||||| | ||||||||||| | || |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54302279 |
taaaccaagagaactataaaagagatgaacaccaaaagtccaaataaaaaaaaagttgtaaataatattcacaatttatacaataccataaaaaggaaga |
54302378 |
T |
|
| Q |
366 |
gatatatataaatgggattgaaagagagctgtacaaatgattaactagctcataactcataatgagcatttggactttgaattttattgtttatgtataa |
465 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54302379 |
aatatatacaaatgggactgaaagagagctgtacaaatgattaactagttcataactcataatgagcatttggactttgaattttattgtttatgtataa |
54302478 |
T |
|
| Q |
466 |
ttgaattcctggcaaaatttttggacagtgaactatatacaatttagataataaaacattatccctcctaatttttcaaaccactaatccatatatataa |
565 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54302479 |
ttgaattcctggcaaaaaatttggacagtgaactatatacaatttagataataaaacattatccctcctaatttttcaaaccactaatccatatatataa |
54302578 |
T |
|
| Q |
566 |
ggtagagtgtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttcaga |
665 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54302579 |
ggtagagtgtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttaaga |
54302678 |
T |
|
| Q |
666 |
aatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattct |
765 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54302679 |
aatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattct |
54302778 |
T |
|
| Q |
766 |
ctaatctgcagacaatttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnnn |
865 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54302779 |
ctaatctgcagacaatttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaaa |
54302878 |
T |
|
| Q |
866 |
nngataaacctgtatatatggagcaccgttcgccactttatacatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcgt |
965 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54302879 |
aagataaacctgtatatatggagcatcgttcgccactttatatatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacgt |
54302978 |
T |
|
| Q |
966 |
tcatctc |
972 |
Q |
| |
|
||||||| |
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| T |
54302979 |
tcatctc |
54302985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 203 - 473
Target Start/End: Original strand, 54307618 - 54307890
Alignment:
| Q |
203 |
tagaatacagatcttctctaaatccactcaaacctctaaactaagacagcggattctaatttcactaaaccaagagaactttgaaagagatgaaaagcag |
302 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||| ||||||||||||||| | ||||||||||| | || |
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| T |
54307618 |
tagaatacagatcttctctaaacccgctcaaacctctaaactgtgacagcagattctaatttcattaaaccaagagaactataaaagagatgaacaccaa |
54307717 |
T |
|
| Q |
303 |
aagtccaaatgaaaa--aagttgtaaataatattcacaatttatacaataccacaaaaaggaagagatatatataaatgggattgaaagagagctgtaca |
400 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||| |
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| T |
54307718 |
aagtccaaataaaaaaaaagttgtaaataatattcacaatttatacaataccataaaaaggaagaaatatatacaaatgggactgaaagagagctgtaca |
54307817 |
T |
|
| Q |
401 |
aatgattaactagctcataactcataatgagcatttggactttgaattttattgtttatgtataattgaattc |
473 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
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| T |
54307818 |
aatgattaactagttcataactcataatgagcatttggactttgaattttgttgtttatgtacaattaaattc |
54307890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 779
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
726 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
779 |
Q |
| |
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|||||||||||||| |||| || ||||||||||| ||||||||||||||||| |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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