View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20160_low_12 (Length: 344)
Name: NF20160_low_12
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 24180398 - 24180293
Alignment:
| Q |
226 |
gctaaacatcgaacaatctgaaccataatttctatgaaattttaatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttccttt |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24180398 |
gctaaacatcgaacaatctgaaccataatttctgtgaaattttaatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttccttt |
24180299 |
T |
|
| Q |
326 |
catctc |
331 |
Q |
| |
|
|||||| |
|
|
| T |
24180298 |
catctc |
24180293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 24180541 - 24180492
Alignment:
| Q |
92 |
aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24180541 |
aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc |
24180492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 24180620 - 24180571
Alignment:
| Q |
19 |
atgtgcatctctacacttttccatctcttcatctctttgttcatatgaca |
68 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24180620 |
atgtgcatctctacacttccccatctcttcatctctttgttcatatgaca |
24180571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 21149283 - 21149234
Alignment:
| Q |
92 |
aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc |
141 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
21149283 |
aatctagatcaatgacaagcgtatgcttttcatgttcaattcaattttgc |
21149234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 18243021 - 18243126
Alignment:
| Q |
226 |
gctaaacatcgaacaatctgaaccataatttctatgaaattttaatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttccttt |
325 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18243021 |
gctaaacatcgaacaatctgaatcataatttctgtgaaattttaatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttccttt |
18243120 |
T |
|
| Q |
326 |
catctc |
331 |
Q |
| |
|
|||||| |
|
|
| T |
18243121 |
catctc |
18243126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 18242895 - 18242944
Alignment:
| Q |
92 |
aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18242895 |
aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc |
18242944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 18242815 - 18242864
Alignment:
| Q |
19 |
atgtgcatctctacacttttccatctcttcatctctttgttcatatgaca |
68 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18242815 |
atgtgcatctctacacttccccatctcttcatctctttgttcatatgaca |
18242864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 52255402 - 52255346
Alignment:
| Q |
275 |
ttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatctc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52255402 |
ttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatctc |
52255346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 331
Target Start/End: Complemental strand, 48715151 - 48715053
Alignment:
| Q |
230 |
aacatcgaacaatctgaaccataatttctatgaaattttaatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatc |
329 |
Q |
| |
|
|||| |||||| ||| ||||||| | |||||||||||||| ||||||||||| |||||||| || ||||||||||| ||| |||||||||||||||| |
|
|
| T |
48715151 |
aacaacgaacagtctaaaccatattatctatgaaattttactgatttcatgag---catcaaattatatagaaaaataaaaatctcattttcctttcatc |
48715055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University