View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_low_16 (Length: 315)

Name: NF20160_low_16
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_low_16
NF20160_low_16
[»] chr8 (9 HSPs)
chr8 (136-297)||(14295064-14295225)
chr8 (11-112)||(14295245-14295346)
chr8 (54-112)||(27786554-27786612)
chr8 (57-112)||(3072281-3072336)
chr8 (66-107)||(36206252-36206293)
chr8 (66-105)||(399518-399557)
chr8 (57-112)||(8831017-8831072)
chr8 (66-112)||(29369409-29369455)
chr8 (66-102)||(3801298-3801334)
[»] chr5 (5 HSPs)
chr5 (54-105)||(36868587-36868638)
chr5 (55-102)||(32278461-32278507)
chr5 (66-102)||(788032-788068)
chr5 (55-107)||(15188263-15188315)
chr5 (66-102)||(19215714-19215750)
[»] chr2 (1 HSPs)
chr2 (66-112)||(18811481-18811527)
[»] chr1 (5 HSPs)
chr1 (54-112)||(41034786-41034844)
chr1 (66-112)||(3374580-3374626)
chr1 (66-112)||(19393908-19393954)
chr1 (57-107)||(39332624-39332674)
chr1 (65-102)||(13061716-13061753)
[»] chr7 (3 HSPs)
chr7 (66-107)||(7543852-7543893)
chr7 (66-102)||(19407645-19407681)
chr7 (56-112)||(29132189-29132245)
[»] chr4 (1 HSPs)
chr4 (55-112)||(18522040-18522097)
[»] chr3 (4 HSPs)
chr3 (66-107)||(29347131-29347172)
chr3 (66-107)||(51525164-51525205)
chr3 (53-112)||(26796582-26796640)
chr3 (66-112)||(35526303-35526348)
[»] chr6 (1 HSPs)
chr6 (54-104)||(10990310-10990360)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 136 - 297
Target Start/End: Complemental strand, 14295225 - 14295064
Alignment:
Q  136 tacatcatggttagtaaatgtcattttctttgatgagagtctgccaatatattttgaatcttccaagcaatacagttaaaagatatggtgtgaaaagtca 235  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14295225 tacatcatggttagtaaatgtcattttctttgatgagagtcagccaatatattttgaatcttccaagcaatacagtcaaaagatatggtgtgaaaagtca 14295126  T
Q  236 tgagtggtaatgaatgaatgatgggtgctgagaaaattcatggtgggttgttgggacattgt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14295125 tgagtggtaatgaatgaatgatgggtgctgagaaaattcatggtgggttgttgggacattgt 14295064  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 14295346 - 14295245
Alignment:
Q  11 taatactaattagcaattttgttaatgatgacttgcaatacatttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  14295346 taatactaattagcaattttgttaatgatgacttgcaatacatttgtgactgtgctgtattggttcaggcctctcctgtcttttatattttagtgctttg 14295247  T
Q  111 at 112  Q
    ||    
T  14295246 at 14295245  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 27786612 - 27786554
Alignment:
Q  54 ttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    |||||||| || ||||||||||||||||||| |||| ||||||||||||||||| ||||    
T  27786612 ttgtgactttgttgtattggttcaggcctctcctgtattttatattttagtgctttgat 27786554  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 3072336 - 3072281
Alignment:
Q  57 tgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||| || ||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  3072336 tgactttgttgtattggttcaggcatctcctgtcttttatattttagtgctttgat 3072281  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 36206293 - 36206252
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  36206293 tgtattgattcaggcctctcctgtcttttatattttagtgct 36206252  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 399557 - 399518
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtg 105  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  399557 tgtattggttcaggcatctcctgtcttttatattttagtg 399518  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 8831072 - 8831017
Alignment:
Q  57 tgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||| || ||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  8831072 tgactttgttgtattggttcagacatctcctgtcttttatattttagtgctttgat 8831017  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 29369409 - 29369455
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||| ||||||||| ||||||||||||||||| |||| ||||    
T  29369409 tgtattggtccaggcctctcctgtcttttatattttattgctttgat 29369455  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 3801298 - 3801334
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  3801298 tgtattggttcagacctctcctgtcttttatatttta 3801334  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 36868587 - 36868638
Alignment:
Q  54 ttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtg 105  Q
    ||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  36868587 ttgtgactgtgttgtattggttcaggcctctcctatcttttatattttagtg 36868638  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 32278507 - 32278461
Alignment:
Q  55 tgtgactgtgctgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||| || ||||||||||||||||||||||| |||||||||||||    
T  32278507 tgtgactctgatgtattggttcaggcctcttctg-cttttatatttta 32278461  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 788068 - 788032
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  788068 tgtattggttcaggcttctcctgtcttttatatttta 788032  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 15188263 - 15188315
Alignment:
Q  55 tgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||||| || |||||| |||||||| |||  |||||||||||||||||||||    
T  15188263 tgtgactctgttgtattcgttcaggcatctcttgtcttttatattttagtgct 15188315  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 19215714 - 19215750
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||||||||||||||| || ||||||||||||||    
T  19215714 tgtattggttcaggcctctcctatcttttatatttta 19215750  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 18811527 - 18811481
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  18811527 tgtattggttcaggcctctcctgtcttttatattttagtgctttgat 18811481  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 41034844 - 41034786
Alignment:
Q  54 ttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    |||||||| || ||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  41034844 ttgtgactctggtgtattggttcagacctctcctgtcttttatattttagtgctttgat 41034786  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 3374580 - 3374626
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  3374580 tgtattggttcaggcatcttatgtcttttatattttagtgctttgat 3374626  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 19393954 - 19393908
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  19393954 tgtattggttcagacatctcctgtcttttatattttagtgctttgat 19393908  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 39332624 - 39332674
Alignment:
Q  57 tgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||| || ||||||| ||||||| ||| ||||||||||||||||||||||    
T  39332624 tgactctgttgtattgattcaggcatctcctgtcttttatattttagtgct 39332674  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 13061753 - 13061716
Alignment:
Q  65 ctgtattggttcaggcctcttctgtcttttatatttta 102  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  13061753 ctgtattggttcgggcctctgctgtcttttatatttta 13061716  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 7543893 - 7543852
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  7543893 tgtattggttcaggcctctcctgtcttttatattttattgct 7543852  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 19407681 - 19407645
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatatttta 102  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19407681 tgtattggttcaggcctctcctgtcttttatatttta 19407645  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 29132245 - 29132189
Alignment:
Q  56 gtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    |||||| | ||||||||||||| | |||||||||||||||||| ||| |||| ||||    
T  29132245 gtgactctactgtattggttcatgtctcttctgtcttttatatgttattgctttgat 29132189  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 18522097 - 18522040
Alignment:
Q  55 tgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||| || | ||||||||||||||||| ||||||||||||||||| |||| ||||    
T  18522097 tgtgactctgatatattggttcaggcctctcctgtcttttatattttattgctttgat 18522040  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 29347131 - 29347172
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  29347131 tgtattggttcaggcctctcctgtcttttatattttattgct 29347172  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 51525164 - 51525205
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgct 107  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  51525164 tgtattggctcaggcctctcctgtcttttatattttagtgct 51525205  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 26796640 - 26796582
Alignment:
Q  53 tttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||| || |||||||||||| || ||||||||||||||| |||||||||| ||||    
T  26796640 tttgtgactctgttgtattggttcaagcatcttctgtcttttat-ttttagtgctttgat 26796582  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 35526348 - 35526303
Alignment:
Q  66 tgtattggttcaggcctcttctgtcttttatattttagtgctctgat 112  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  35526348 tgtattggttcaggcctct-ctgtcttttatattttattgctttgat 35526303  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 10990310 - 10990360
Alignment:
Q  54 ttgtgactgtgctgtattggttcaggcctcttctgtcttttatattttagt 104  Q
    |||||||| |||||||||||||||| ||||| | |||||| ||||||||||    
T  10990310 ttgtgactctgctgtattggttcagacctctcccgtctttaatattttagt 10990360  T

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