View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_low_19 (Length: 289)
Name: NF20160_low_19
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 72 - 280
Target Start/End: Complemental strand, 41705339 - 41705132
Alignment:
| Q |
72 |
tgtgttgaattctattatggagagtgagtgtgttagaggtaatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataac |
171 |
Q |
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| T |
41705339 |
tgtgttgaattctatcatggagagtgagtgtgttagaggtaatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataac |
41705240 |
T |
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| Q |
172 |
aggggagaagccatttggttaaaca--gtatttgnnnnnnnngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtgg |
269 |
Q |
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| T |
41705239 |
aggggagaagccatttggttaaacagggtatttg-tttttttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtgg |
41705143 |
T |
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| Q |
270 |
tgtgtgatgat |
280 |
Q |
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| T |
41705142 |
tgtgtgatgat |
41705132 |
T |
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