View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_low_2 (Length: 876)

Name: NF20160_low_2
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_low_2
NF20160_low_2
[»] chr7 (7 HSPs)
chr7 (18-858)||(44541254-44542094)
chr7 (363-412)||(29060731-29060780)
chr7 (363-411)||(24996676-24996724)
chr7 (363-404)||(42607088-42607129)
chr7 (363-411)||(24995859-24995907)
chr7 (363-410)||(32871134-32871181)
chr7 (363-404)||(42607812-42607853)
[»] chr5 (2 HSPs)
chr5 (352-738)||(472715-473096)
chr5 (363-404)||(4789527-4789568)
[»] chr1 (11 HSPs)
chr1 (358-498)||(36272453-36272593)
chr1 (358-498)||(6768024-6768164)
chr1 (431-505)||(37422470-37422544)
chr1 (363-412)||(48835089-48835138)
chr1 (363-410)||(4640535-4640582)
chr1 (363-410)||(4641756-4641803)
chr1 (358-404)||(11031433-11031479)
chr1 (358-404)||(11032219-11032265)
chr1 (358-404)||(47334900-47334946)
chr1 (363-404)||(38931321-38931362)
chr1 (363-404)||(41884229-41884270)
[»] chr2 (4 HSPs)
chr2 (361-498)||(23462410-23462547)
chr2 (358-403)||(5005464-5005509)
chr2 (358-448)||(32471941-32472031)
chr2 (368-449)||(43743795-43743876)
[»] chr6 (4 HSPs)
chr6 (384-492)||(23593852-23593960)
chr6 (363-492)||(8383930-8384059)
chr6 (436-492)||(8383236-8383292)
chr6 (370-471)||(24125986-24126087)
[»] chr3 (6 HSPs)
chr3 (363-412)||(33455773-33455822)
chr3 (363-409)||(49161803-49161849)
chr3 (361-390)||(26836351-26836380)
chr3 (358-403)||(41553348-41553393)
chr3 (358-423)||(43768028-43768092)
chr3 (363-404)||(51421675-51421716)
[»] chr8 (3 HSPs)
chr8 (363-404)||(37562302-37562343)
chr8 (414-505)||(6013026-6013117)
chr8 (358-423)||(42345396-42345461)
[»] chr4 (4 HSPs)
chr4 (369-411)||(34371475-34371517)
chr4 (363-404)||(25970113-25970154)
chr4 (358-423)||(39429227-39429292)
chr4 (370-471)||(47377531-47377632)


Alignment Details
Target: chr7 (Bit Score: 737; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 18 - 858
Target Start/End: Complemental strand, 44542094 - 44541254
Alignment:
Q  18 tcacatacactgacgaagatacctcaaaagcaactgagactacctcccttgatcacaaggaagggctgatagaacaagaattcaagaaatattactgtga 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44542094 tcacatacaccgacgaagatacctcaaaagcaactgagactacctcccttgatgacaaggaagggctgatagaacaagaattcaagaaatattactgtga 44541995  T
Q  118 aagcaatgtttgcagtgacttatatgcaaacgatggttcacgctatgttggaaatgaagatgcagtacaaaaagaagcaattttgaacgaaacagtgaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44541994 aagcaatgtttgcagtgacttatatgcaaacgatggttcacgctatgttggaaatgaagatgcagtacaaaaagaagcaattttgaacgaaacagcgaat 44541895  T
Q  218 ttcactatgctgcaaaaggaacaaccatcaatattgacatcatgggttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtg 317  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541894 ttcactatgctgcaaaaggaacaaccatcaatattgacatcctgggttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtg 44541795  T
Q  318 gcttacaggaatctcttaatgtttttgatgatgcgattgatggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccat 417  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  44541794 gcttacaggaatctcttaatgttcttgatgatgcgattgatggcatttagcatgggaaagtggaattgtttccgaccatgggaaagtattttttggccat 44541695  T
Q  418 cagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctctccttataactc 517  Q
    |||||| || ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541694 cagattaaagagaatcaccaatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctctccttataactc 44541595  T
Q  518 actcacccaccacaagctgcctaaattgcaggatcaaaccaactatggataatcatttcaacagcttgaatcacacaaagtgctcccaacattttattct 617  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44541594 actcacctaccacaagctgcctaaattgcaagatcaaaccaactatggat-atcatttcaacagcttgaatcacacaaagtgctcctaacattttattct 44541496  T
Q  618 ctctttccatannnnnnnaattcaagtttcagtgacaaatgggtcacta-ttttctctaaattgaccattgattttagtttgtgttccttaatgaaactc 716  Q
    |||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541495 ctctttccatatttttttaattcaagtttcagtgacaaatgggtcactatttttctctaaattgaccattgattttagtttgtgttccttaatgaaactc 44541396  T
Q  717 acagtttttaatttataggaaatcccatgctattttggattttgaattactctgaatattatttcgaatcttgtattttttagaggtataatctcacact 816  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44541395 acagtttttaatttataggaaatcccatgctattttggattttgaatttctctggatattatttcgaatcttgtattttttagaggtataatctcacact 44541296  T
Q  817 tttatcatgtatttccttcaatctcacaaatcttgtatctgg 858  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44541295 tttatcatgtatttccttcaatctcacaaatcttgtatctgg 44541254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 29060780 - 29060731
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 412  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  29060780 tttagcatgggaaaggggaattgtttcccaccatgggaaagtttttttta 29060731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 24996724 - 24996676
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttt 411  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  24996724 tttagcatgggaaaggggagttgtttcccaccatgggaaagtatttttt 24996676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 42607088 - 42607129
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  42607088 tttagcatgggaaaggggaattgtttcccaccatgggaaagt 42607129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 24995859 - 24995907
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttt 411  Q
    ||||| ||||||||||||| |||||||| ||||| ||||||||||||||    
T  24995859 tttagaatgggaaaggggagttgtttcccaccatgggaaagtatttttt 24995907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 32871181 - 32871134
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 410  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  32871181 tttagcatgggaatggggagttgtttcccaccataggaaagttttttt 32871134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 42607853 - 42607812
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    |||||||||| ||||||||||||||||| | |||||||||||    
T  42607853 tttagcatggaaaaggggaattgtttcccatcataggaaagt 42607812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 352 - 738
Target Start/End: Complemental strand, 473096 - 472715
Alignment:
Q  352 gattgatggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagta 451  Q
    ||||| |||||||||  ||||||||||| | | |||||| ||||||| |||||||||||||||||||||||| || || | |||||||||||||||| |     
T  473096 gattggtggcatttaatatgggaaagggaagtcgtttcccaccatagaaaagtattttttagccatcagattaaagaggaccactgatcttattataatc 472997  T
Q  452 tgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctctcctt-ataactcactcacccaccacaagctgcctaaattgcagga 550  Q
    |||||||||||||||||| |||||||||||||||| || |||  ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||    
T  472996 tgcacacactatatcttttccaactttgtcttcaa-ctaacagccatttctctctccttcataactcactcacccaccaccagctgcctaaattgcaaga 472898  T
Q  551 tcaaaccaactatggataatcatttcaacag-cttgaatcacacaaagtgctcccaacattttattctctctttccatannnnnnnaattcaagtttcag 649  Q
    |||||||||||||| || || |||||||||| ||||||||||||  ||||||| ||||||||||||||||||    |||       ||||||||||||||    
T  472897 tcaaaccaactatgaat-attatttcaacagccttgaatcacac--agtgctctcaacattttattctctct----atatttttttaattcaagtttcag 472805  T
Q  650 tgacaaatgggtcacta-ttttctctaaattgaccattgattttagtttgtgttccttaatgaaactcacagtttttaatttataggaaa 738  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  || |||||||||| ||| ||||||||||    
T  472804 tgacaaatgggtcactatttttctctaaattgaccattaattttagtttgtgttccttaacaaagctcacagtttgtaaattataggaaa 472715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 4789527 - 4789568
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  4789527 tttagcatgggaaaggggagttgtttcccaccatgggaaagt 4789568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 5e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 358 - 498
Target Start/End: Complemental strand, 36272593 - 36272453
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcaca 457  Q
    |||||||||||||||||| ||| | |||||||| ||||| |||||||||||||| |||||| |||| || || || ||||||||||||||||| ||||||    
T  36272593 tggcatttagcatgggaatgggaacttgtttcccaccatgggaaagtattttttggccatctgattaaagaggattactgatcttattatagtctgcaca 36272494  T
Q  458 cactatatctttcccaactttgtcttcaacctcacaatcat 498  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  36272493 cactatatctttctcaactttgtcttcaacctcactatcat 36272453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 358 - 498
Target Start/End: Complemental strand, 6768164 - 6768024
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcaca 457  Q
    |||||||||||||||||| ||| | || ||||| ||||| |||||||||||||| |||||| |||| || || || ||| ||||||||||||| ||||||    
T  6768164 tggcatttagcatgggaatgggaacttatttcccaccatgggaaagtattttttggccatctgattaaagaggattactaatcttattatagtctgcaca 6768065  T
Q  458 cactatatctttcccaactttgtcttcaacctcacaatcat 498  Q
    || |||||||||| ||||||||||||||||||||| |||||    
T  6768064 cattatatctttctcaactttgtcttcaacctcactatcat 6768024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 431 - 505
Target Start/End: Original strand, 37422470 - 37422544
Alignment:
Q  431 atcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc 505  Q
    ||||||| |||||||||||| |||| ||||| |||||||||  ||||| ||||||||||||| | ||| ||||||    
T  37422470 atcactggtcttattatagtctgcaaacactgtatctttccagactttatcttcaacctcactaccatctctctc 37422544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 48835138 - 48835089
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 412  Q
    |||||||||||||||||||||||||| | ||||| ||||||| |||||||    
T  48835138 tttagcatgggaaaggggaattgttttccaccatgggaaagtttttttta 48835089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 4640535 - 4640582
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 410  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| ||||    
T  4640535 tttagcatggtaaaggggaattgtttcccaccatgggaaagtaatttt 4640582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 4641803 - 4641756
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 410  Q
    |||||||||||||||||||||||||||| ||||  |||||||| ||||    
T  4641803 tttagcatgggaaaggggaattgtttcccaccaagggaaagtaatttt 4641756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 11031433 - 11031479
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    ||||||||| |||||||||||||||| |||||| ||||| |||||||    
T  11031433 tggcatttaacatgggaaaggggaatagtttcccaccatgggaaagt 11031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 11032265 - 11032219
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    ||||||||| |||||||||||||||| |||||| ||||| |||||||    
T  11032265 tggcatttaacatgggaaaggggaatagtttcccaccatgggaaagt 11032219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 47334946 - 47334900
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    |||||||||| |||||||| |||| |||||||| |||||||||||||    
T  47334946 tggcatttagtatgggaaaagggagttgtttcccaccataggaaagt 47334900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 38931321 - 38931362
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  38931321 tttagcatgagaaaggggaattgtttcccaccatgggaaagt 38931362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 41884270 - 41884229
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    |||||||||| |||||| |||||||||| |||||||||||||    
T  41884270 tttagcatggaaaagggaaattgtttcccaccataggaaagt 41884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 361 - 498
Target Start/End: Original strand, 23462410 - 23462547
Alignment:
Q  361 catttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacac 460  Q
    |||||||||||| || ||| | |||||| | ||||| |||||||||||||| |||||| || | || || |||||||||||||||||||| |||||||||    
T  23462410 catttagcatggaaatgggaacttgttttctaccatgggaaagtattttttggccatctgactaaagaggatcactgatcttattatagtctgcacacac 23462509  T
Q  461 tatatctttcccaactttgtcttcaacctcacaatcat 498  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  23462510 tatatctttctcaactttgtcttcaacctcactatcat 23462547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 5005464 - 5005509
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaag 403  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||    
T  5005464 tggcatttagcatgggaaaggggaattgtttcccatcatgggaaag 5005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 358 - 448
Target Start/End: Original strand, 32471941 - 32472031
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattata 448  Q
    ||||||||| ||||||||||| | ||  ||||| ||||| ||||||| |||| || |||| ||||| ||| | | ||||||||||||||||    
T  32471941 tggcatttaacatgggaaaggtggatcctttcccaccatgggaaagttttttgtaaccattagattaaaatggaacactgatcttattata 32472031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 43743876 - 43743795
Alignment:
Q  368 catgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatag 449  Q
    ||||||||||| ||||  ||||| ||||| ||||| | ||||||| |||||||||||||| | | || |||||||| |||||    
T  43743876 catgggaaaggtgaatcctttcccaccatgggaaacttttttttaaccatcagatttaaagggaacattgatcttactatag 43743795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 384 - 492
Target Start/End: Complemental strand, 23593960 - 23593852
Alignment:
Q  384 tgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtctt 483  Q
    ||||||| ||||| |||||||||||||| ||  | ||| | || || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  23593960 tgtttcccaccatgggaaagtattttttggcggttagactaaagaggatcactgattttattatagtatgcatacactatatctttcccaactttgtctt 23593861  T
Q  484 caacctcac 492  Q
    |||||||||    
T  23593860 caacctcac 23593852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 363 - 492
Target Start/End: Complemental strand, 8384059 - 8383930
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacacta 462  Q
    ||||||||||||||| ||| |||||||| ||||| | ||| ||||||||  |  | |||||||| || |||  |||||||||||| || |||||||||||    
T  8384059 tttagcatgggaaagtggagttgtttcccaccatggaaaaatattttttgacggttagatttaagaggatcgttgatcttattatggtctgcacacacta 8383960  T
Q  463 tatctttcccaactttgtcttcaacctcac 492  Q
    ||| ||||||||||||||||||||||||||    
T  8383959 tatatttcccaactttgtcttcaacctcac 8383930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 492
Target Start/End: Original strand, 8383236 - 8383292
Alignment:
Q  436 tgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcac 492  Q
    ||||||||||||| | | ||||||||||||||||||| |||||||| ||||||||||    
T  8383236 tgatcttattataatctacacacactatatctttccccactttgtcatcaacctcac 8383292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 24125986 - 24126087
Alignment:
Q  370 tgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatcttt 469  Q
    |||||||||||| |||||||| ||||| |||||||  |||| |||||| |||||||| || | || | || |||||||||| |   |||||||||| |||    
T  24125986 tgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatttaagaggaacattaattttattatagtctatccacactatattttt 24126085  T
Q  470 cc 471  Q
    ||    
T  24126086 cc 24126087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 33455822 - 33455773
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 412  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  33455822 tttagcatgggaaaggggaattgtttcccaccataggaaagtttttttta 33455773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 409
Target Start/End: Complemental strand, 49161849 - 49161803
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttt 409  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  49161849 tttagcatgggaaaggggaattgtttcccaccatgggaaagtttttt 49161803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 390
Target Start/End: Original strand, 26836351 - 26836380
Alignment:
Q  361 catttagcatgggaaaggggaattgtttcc 390  Q
    ||||||||||||||||||||||||||||||    
T  26836351 catttagcatgggaaaggggaattgtttcc 26836380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 41553393 - 41553348
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaag 403  Q
    ||||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  41553393 tggcatttatcatgggaaaggtgaattatttcccaccataggaaag 41553348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 43768028 - 43768092
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 423  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||||| |||| |||||    
T  43768028 tggcatttagcatgggaatggagagttgtttcccaccatgggaaagt-ttttttaaccattagatt 43768092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 51421716 - 51421675
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  51421716 tttagcatgagaaaggggaattgtttcccaccatgggaaagt 51421675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 37562302 - 37562343
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  37562302 tttagcatgggaaaggagaattgtttcccaccataggaaagt 37562343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 6013026 - 6013117
Alignment:
Q  414 ccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc 505  Q
    |||| ||||| || || ||||||  ||||||||||||||||| ||||  |||||||||  ||||| ||||||||||||| | ||| ||||||    
T  6013026 ccattagattaaagaggatcactagtcttattatagtatgcaaacacggtatctttccagactttatcttcaacctcactaccatctctctc 6013117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 42345396 - 42345461
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 423  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||| | |||| |||||    
T  42345396 tggcatttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagatt 42345461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 34371475 - 34371517
Alignment:
Q  369 atgggaaaggggaattgtttccgaccataggaaagtatttttt 411  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||    
T  34371475 atgggaaaggggaattgtttcccaccatgggaaagtttttttt 34371517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 25970113 - 25970154
Alignment:
Q  363 tttagcatgggaaaggggaattgtttccgaccataggaaagt 404  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  25970113 tttagcatgggaaaggggagttgtttcccaccatgggaaagt 25970154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 39429227 - 39429292
Alignment:
Q  358 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 423  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||| | |||| |||||    
T  39429227 tggcatttagcatgggaatggagagttgtttcctaccatgggaaagtttttttcaaccattagatt 39429292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 471
Target Start/End: Complemental strand, 47377632 - 47377531
Alignment:
Q  370 tgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatcttt 469  Q
    |||||||||||| |||||||| ||||| |||||||  |||| |||||| |||||||| || | || | || |||||||||| |   |||||||||| |||    
T  47377632 tgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatttaagaggaacattaattttattatagtctatccacactatattttt 47377533  T
Q  470 cc 471  Q
    ||    
T  47377532 cc 47377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University