View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_low_22 (Length: 255)

Name: NF20160_low_22
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_low_22
NF20160_low_22
[»] chr7 (11 HSPs)
chr7 (1-242)||(32538040-32538294)
chr7 (1-242)||(37632924-37633180)
chr7 (147-242)||(36107107-36107202)
chr7 (147-242)||(44959228-44959323)
chr7 (1-101)||(44959385-44959493)
chr7 (147-242)||(40210603-40210698)
chr7 (1-92)||(16279369-16279468)
chr7 (147-242)||(24954297-24954392)
chr7 (205-242)||(10461627-10461664)
chr7 (178-231)||(16279220-16279273)
chr7 (178-242)||(33439113-33439177)
[»] chr3 (9 HSPs)
chr3 (1-242)||(45222380-45222634)
chr3 (1-101)||(52498767-52498875)
chr3 (1-101)||(53592417-53592525)
chr3 (147-242)||(4773878-4773973)
chr3 (147-234)||(52498928-52499015)
chr3 (147-242)||(39084779-39084874)
chr3 (178-242)||(48432585-48432649)
chr3 (154-217)||(53592296-53592359)
chr3 (178-242)||(12025618-12025682)
[»] chr5 (17 HSPs)
chr5 (1-236)||(14633802-14634053)
chr5 (147-242)||(40484321-40484415)
chr5 (147-231)||(34696335-34696419)
chr5 (1-92)||(35667726-35667824)
chr5 (147-242)||(9889241-9889336)
chr5 (147-242)||(23928401-23928496)
chr5 (1-52)||(40484496-40484547)
chr5 (147-217)||(10540102-10540172)
chr5 (1-101)||(10540230-10540338)
chr5 (23-92)||(34696498-34696568)
chr5 (75-119)||(40484457-40484501)
chr5 (23-101)||(26362809-26362888)
chr5 (23-92)||(41358992-41359062)
chr5 (147-234)||(26362666-26362753)
chr5 (147-242)||(35667890-35667985)
chr5 (149-221)||(6011193-6011265)
chr5 (154-242)||(29289907-29289995)
[»] chr8 (11 HSPs)
chr8 (1-52)||(27822820-27822871)
chr8 (147-242)||(27822587-27822682)
chr8 (147-242)||(31628139-31628234)
chr8 (63-121)||(27822721-27822779)
chr8 (147-242)||(22342951-22343046)
chr8 (147-242)||(22354611-22354706)
chr8 (155-242)||(37780892-37780979)
chr8 (23-94)||(39918777-39918850)
chr8 (174-242)||(15004203-15004271)
chr8 (178-242)||(33365622-33365686)
chr8 (23-92)||(37675174-37675245)
[»] chr4 (11 HSPs)
chr4 (1-101)||(43342880-43342988)
chr4 (1-101)||(890760-890867)
chr4 (147-242)||(23722886-23722981)
chr4 (149-240)||(26688381-26688472)
chr4 (149-234)||(43343042-43343127)
chr4 (174-242)||(26071038-26071106)
chr4 (147-242)||(42547052-42547148)
chr4 (147-242)||(7474326-7474421)
chr4 (149-240)||(24221802-24221893)
chr4 (193-234)||(890969-891010)
chr4 (210-242)||(53153371-53153403)
[»] chr6 (13 HSPs)
chr6 (1-119)||(17437028-17437154)
chr6 (147-242)||(30125787-30125882)
chr6 (1-101)||(18999696-18999803)
chr6 (23-103)||(11172263-11172344)
chr6 (149-242)||(17437190-17437283)
chr6 (147-236)||(8769985-8770074)
chr6 (1-91)||(31834382-31834480)
chr6 (147-242)||(3100586-3100681)
chr6 (163-242)||(31834559-31834638)
chr6 (33-103)||(6940146-6940215)
chr6 (189-242)||(6939987-6940040)
chr6 (163-240)||(13601192-13601269)
chr6 (193-242)||(18999905-18999954)
[»] chr2 (10 HSPs)
chr2 (1-119)||(27451525-27451649)
chr2 (154-242)||(27451696-27451784)
chr2 (1-92)||(8423686-8423784)
chr2 (147-242)||(8423852-8423947)
chr2 (149-242)||(17473669-17473760)
chr2 (147-242)||(30357430-30357525)
chr2 (147-242)||(34899218-34899313)
chr2 (147-242)||(22416498-22416593)
chr2 (196-242)||(8371571-8371617)
chr2 (159-236)||(18765142-18765219)
[»] chr1 (17 HSPs)
chr1 (154-242)||(21969326-21969414)
chr1 (179-234)||(220557-220612)
chr1 (23-119)||(15836681-15836776)
chr1 (154-242)||(38036500-38036588)
chr1 (147-242)||(14796015-14796110)
chr1 (147-242)||(14804889-14804984)
chr1 (147-221)||(14293967-14294041)
chr1 (23-92)||(38036354-38036424)
chr1 (155-240)||(15836546-15836631)
chr1 (178-242)||(8059639-8059703)
chr1 (147-242)||(19584469-19584564)
chr1 (23-92)||(14293818-14293888)
chr1 (147-234)||(39331182-39331269)
chr1 (147-218)||(40710149-40710220)
chr1 (179-242)||(50050386-50050449)
chr1 (148-242)||(51250669-51250763)
chr1 (151-240)||(32829396-32829485)
[»] scaffold0001 (1 HSPs)
scaffold0001 (147-242)||(396890-396985)
[»] scaffold0123 (2 HSPs)
scaffold0123 (147-234)||(26440-26527)
scaffold0123 (1-101)||(26587-26695)
[»] scaffold0017 (2 HSPs)
scaffold0017 (154-242)||(28735-28823)
scaffold0017 (27-92)||(28587-28653)
[»] scaffold0688 (2 HSPs)
scaffold0688 (149-240)||(2748-2839)
scaffold0688 (149-240)||(4415-4506)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 32538294 - 32538040
Alignment:
Q  1 atattataacttattattttataaatatagtgaaatagattacacaatttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaatatgagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| ||||||||||||||||||    
T  32538294 atattataacttattattttataaatatagtgaaatagattacacaatttttgaaagaaaataaaaagcttagtaatttttatgagaaaaaatatgagga 32538195  T
Q  101 ctctagtcatttaatattatcnnnnnnntagaaaattaatttgg--------agacccaacc-----caaaccaaaaactaatggatttacccaaactca 187  Q
    ||||||||||||||||||| |        |||||||||||||||          |||||| |     |||||| ||||||| |||||||  |||||||||    
T  32538194 ctctagtcatttaatattaccaaaataacagaaaattaatttgggtaacccactacccaatctaaaacaaaccgaaaactagtggatttgtccaaactca 32538095  T
Q  188 cccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  32538094 cccattaatataatgggtggacattttacctcactcaaaccggagtaccctatat 32538040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37632924 - 37633180
Alignment:
Q  1 atattataacttattattttataaatatagtgaaatagattacacaatttttgaaagaaaataaaatgttcagtaatttttgtgag--aaaaaatatgag 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||| ||||  ||||||||||||    
T  37632924 atattataacttattattttataaatatagtgaaatagattacacaatttttttaagaaaataaaaagttgagtaatttttatgagaaaaaaaatatgag 37633023  T
Q  99 gactctagtcatttaatattatcnnnnnnntagaaaattaatttgg--------agacccaac-----ccaaaccaaaaactaatggatttacccaaact 185  Q
    |||| |||||||||||||||||         |||||| ||||||||          |||||||     ||||||| ||||||| ||| |||  |||||||    
T  37633024 gactgtagtcatttaatattataaaaaaaacagaaaaataatttgggtaacccactacccaaccaaaaccaaaccgaaaactagtgggtttgtccaaact 37633123  T
Q  186 cacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||||||||||| |||||||||| ||||||||  |||||||| ||||||||||    
T  37633124 cacccattaatataataggtggacattctacctcacccaaaccggaataccctatat 37633180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 36107202 - 36107107
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  36107202 acccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 36107107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 44959323 - 44959228
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||||||||||  |||||| ||| ||| | ||||| ||||| |||||||||  ||||||| |||||||||||  ||||||||||| |||||||    
T  44959323 acccaacccaaaccggaaactattgggtttgctcaaacccaccccttaatataacaggtggacgttttacctcacccaaaccggagtatcctatat 44959228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 44959493 - 44959385
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaa-tttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       |||||||||||||  |||||||| |||||  |||||||||||| ||| | |||||||| ||||||||||    
T  44959493 atattataacttattattttataacgctaaaatatagtgaaataagttacacaactttttttaagaaaataaaaagttgactaatttttatgagaaaaaa 44959394  T
Q  93 tatgaggac 101  Q
    || ||||||    
T  44959393 tacgaggac 44959385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 40210603 - 40210698
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||| | ||||||||  ||  |||||||||||||||||||    
T  40210603 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtgaatattttaccaaacccaaaccggagtaccctatat 40210698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16279468 - 16279369
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       |||||| |||||||  ||||||||||||   |||||||||||| ||| |||||||||| ||||||||||    
T  16279468 atattataacttattattttataacgctaaaatatagagaaataggatacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 16279369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 24954392 - 24954297
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| |   ||||||||||||| |||||    
T  24954392 acccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaatccaaaccggagtaccttatat 24954297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 10461627 - 10461664
Alignment:
Q  205 tggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||||||||||||  |||||||||||||||||||    
T  10461627 tggacattttacctcacccaaaccggagtaccctatat 10461664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 16279273 - 16279220
Alignment:
Q  178 cccaaactcacccattaatataatgggtggacattttacctcacataaaccgga 231  Q
    |||||||||||||||||||||||  |||| || |||||||||||  ||||||||    
T  16279273 cccaaactcacccattaatataacaggtgaacgttttacctcacccaaaccgga 16279220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 33439113 - 33439177
Alignment:
Q  178 cccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| ||||||||||| ||| ||||||| ||||||||  ||  ||||||||||| |||||||    
T  33439113 cccaaacccacccattaatttaacgggtggatattttaccaaacccaaaccggagtatcctatat 33439177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45222634 - 45222380
Alignment:
Q  1 atattataacttattattttataaatatagtgaaatagattacacaatttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaatatgagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||| |||||||||||| |||||    
T  45222634 atattataacttattattttataaatatagtgaaatagattacacaatttttttaagaaaataaaaagttgagtaatttttatgagaaaaaatacgagga 45222535  T
Q  101 ctctagtcatttaatattatcnnnnnnntagaaaattaatttggaga--------cccaacccaaacca-----aaaactaatggatttacccaaactca 187  Q
     |||||||||||||||||| |        |||||| ||||||||  |        ||||||||||||||     ||||||| ||| ||| ||||||| ||    
T  45222534 ttctagtcatttaatattaccaaaaaaacagaaaaataatttgggtaacccactgcccaacccaaaccaaaccgaaaactagtgggttttcccaaaccca 45222435  T
Q  188 cccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
     |||||||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  45222434 tccattaatataatgggtggacattttacctcacccaaaccggggtaccctatat 45222380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52498767 - 52498875
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       |||||||||||||| |||||||||||||   |||||||||||| ||| |||||||||| ||||||||||    
T  52498767 atattataacttattattttataatgctaaaatatagtgaaataggttacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 52498866  T
Q  93 tatgaggac 101  Q
    || ||||||    
T  52498867 tacgaggac 52498875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 53592525 - 53592417
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       ||||||||||||||  ||||||||||||   |||||||||||| ||| |||||||||| ||||||||||    
T  53592525 atattataacttattattttataatgttaaaatatagtgaaataggctacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 53592426  T
Q  93 tatgaggac 101  Q
    || ||||||    
T  53592425 tacgaggac 53592417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 4773973 - 4773878
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  4773973 acccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 4773878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 52498928 - 52499015
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagta 234  Q
    ||||||||||||||  |||||| ||| ||| ||||||| |||||||||||||||| ||||||| ||||||| |||  ||| |||||||    
T  52498928 acccaacccaaaccggaaactagtgggtttgcccaaacccacccattaatataataggtggactttttaccgcacccaaatcggagta 52499015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 39084874 - 39084779
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| || |||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  39084874 acccaaaccaaaccggaaattagtgggtttgcccaaacccatccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 39084779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 48432649 - 48432585
Alignment:
Q  178 cccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| ||||||||||| ||| ||||||| ||||||||| ||  ||||||||||| |||||||    
T  48432649 cccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtatcctatat 48432585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 53592359 - 53592296
Alignment:
Q  154 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacc 217  Q
    ||||||| ||||||| ||| ||| | ||||| ||||||||||||||||| |||||| |||||||    
T  53592359 ccaaaccgaaaactagtgggtttgctcaaacccacccattaatataatgagtggactttttacc 53592296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 12025682 - 12025618
Alignment:
Q  178 cccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| ||||||||||| ||| ||||| | ||||||| | ||  |||||||||||||||||||    
T  12025682 cccaaacccacccattaatttaacgggtgtatattttacttaacccaaaccggagtaccctatat 12025618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14634053 - 14633802
Alignment:
Q  1 atattataacttattattttataaatatagtgaaatagattacacaatttttga---aagaaaataaaatgttcagtaatttttgtgagaaaaaatatga 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||| ||| ||| |  ||| |||||||||||||||    
T  14634053 atattataacttattattttataaatatagtgaaatagattacacaattttttttttaagaaaataaaaagttgagtgaaatttatgagaaaaaatatga 14633954  T
Q  98 ggactctagtcatttaatattatcnnnnnnntagaaaattaatttgg-------------agacccaacccaaaccaaaaactaatggatttacccaaac 184  Q
    ||||| |||||||||||||||| |        |||||| |||| |||               |||||| ||||||| |||| || ||||||| |||| ||    
T  14633953 ggactttagtcatttaatattaccaaaaagacagaaaaataatctgggtaatccactatccaacccaaaccaaaccgaaaattagtggatttgcccatac 14633854  T
Q  185 tcacccattaatataatgggtggacattttacctcacataaaccggagtacc 236  Q
     |||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  14633853 ccacccattaatataatggatggacattttacctcacccaaaccggagtacc 14633802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 40484415 - 40484321
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||||||| ||||||| | | ||| ||||||| ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  40484415 acccaaaccaaaccgaaaactagttggtttgcccaaacccacccattaat-taatgggtggacattttacctcacccaaaccggagtaccctatat 40484321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 34696419 - 34696335
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccgga 231  Q
    ||||||||||||||  |||||| ||| |||  |||||| |||| |||||||||| ||||||||||||||||||||  ||||||||    
T  34696419 acccaacccaaaccggaaactagtgggtttgtccaaacccacctattaatataacgggtggacattttacctcacccaaaccgga 34696335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35667726 - 35667824
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       |||||||||||||| ||||||||||||   |||||||||||| ||| ||||| |||| ||||||||||    
T  35667726 atattataacttattattttataacgttaaaatatagtgaaataggttacacaattttattaagaaaataaaaagttgagtaaattttatgagaaaaaa 35667824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 9889241 - 9889336
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  9889241 acccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 9889336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 23928401 - 23928496
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||| ||||||||||    
T  23928401 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggaataccctatat 23928496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40484547 - 40484496
Alignment:
Q  1 atattataacttattattttataaatatagtgaaatagattacacaattttt 52  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| ||||    
T  40484547 atattataacttattattttataaacatagtgaaatagatcacacaaatttt 40484496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 10540172 - 10540102
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacc 217  Q
    |||||| ||||||| ||||||| ||| ||| ||||||| |||||||||||||||||| ||||| |||||||    
T  10540172 acccaaaccaaaccgaaaactagtgggtttgcccaaacccacccattaatataatggttggactttttacc 10540102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10540338 - 10540230
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       ||| ||| |||||| |||||||||||||   |||||||||||| ||| |||||||||| ||||||||||    
T  10540338 atattataacttattattttataatgttaaaatacagtcaaataggttacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 10540239  T
Q  93 tatgaggac 101  Q
    || ||||||    
T  10540238 tacgaggac 10540230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 34696568 - 34696498
Alignment:
Q  23 aaatatagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    |||||||||||||||| |||||||||||||   |||||||||||| ||| |||||||||| ||||||||||    
T  34696568 aaatatagtgaaataggttacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 34696498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 40484501 - 40484457
Alignment:
Q  75 aatttttgtgagaaaaaatatgaggactctagtcatttaatatta 119  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  40484501 aatttttttaagaaaaaatatgaggactctagtcatttaatatta 40484457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 26362888 - 26362809
Alignment:
Q  23 aaatatagtgaaatagattacacaatttttgaaagaaaat-aaaatgttcagtaatttttgtgagaaaaaatatgaggac 101  Q
    |||||||||||||||| |||||||||||||  |||||||| |||| ||| | |||||||| |||||||| ||| ||||||    
T  26362888 aaatatagtgaaataggttacacaatttttttaagaaaataaaaaagttgaataatttttatgagaaaagatacgaggac 26362809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 41359062 - 41358992
Alignment:
Q  23 aaatatagtgaaatagattacacaat-ttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    |||||||||||||||| ||||||||| ||||  |||||||||||| ||| |||| ||||| ||||||||||    
T  41359062 aaatatagtgaaataggttacacaattttttttaagaaaataaaaagttgagtagtttttatgagaaaaaa 41358992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 26362753 - 26362666
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagta 234  Q
    |||||| ||||||  ||||||| ||| |||  |||||| |||||||||||||||||| ||||| ||||||| ||   |||||||||||    
T  26362753 acccaaaccaaactgaaaactagtgggtttgtccaaacccacccattaatataatggatggactttttaccgcatccaaaccggagta 26362666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 35667890 - 35667985
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||||||| ||||||| ||| |||  ||| || |||||| |||||||| || || ||||||||||||||  |||||| ||||| ||||||    
T  35667890 acccaaaccaaaccgaaaactagtgggtttgtccagacccacccagtaatataacggatgaacattttacctcacccaaaccgcagtactctatat 35667985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 6011193 - 6011265
Alignment:
Q  149 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 221  Q
    ||||||||| ||||||| || | | ||| ||||||| |||||| |||||||| ||||||  ||||||||||||    
T  6011193 ccaacccaacccaaaaattagtaggtttgcccaaacccacccaataatataacgggtggttattttacctcac 6011265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 29289907 - 29289995
Alignment:
Q  154 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| |||| || ||| ||| ||||||| ||||| ||||| ||| ||||| | |||||| || || ||||||||||||| ||||||    
T  29289907 ccaaaccgaaaattagtgggtttgcccaaacccacccgttaatttaacgggtgaatattttatctaacctaaaccggagtactctatat 29289995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27822871 - 27822820
Alignment:
Q  1 atattataacttattattttataaatatagtgaaatagattacacaattttt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27822871 atattataacttattattttataaatatagtgaaatagattacataattttt 27822820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 27822682 - 27822587
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||||||| ||||||| ||| |||  |||||| |||||||||||||||||||||||||||||| ||||   |||| | ||||||||||||    
T  27822682 acccaaaccaaaccgaaaactagtgggtttgtccaaacccacccattaatataatgggtggacattttatctcaaccaaactgaagtaccctatat 27822587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 31628139 - 31628234
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||| |||||| |||||||    
T  31628139 acccaacccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaactggagtatcctatat 31628234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 27822779 - 27822721
Alignment:
Q  63 aaaatgttcagtaatttttgtgagaaaaaatatgaggactctagtcatttaatattatc 121  Q
    |||| ||| ||||||| || ||||||||||||||||||||||||||||||||| |||||    
T  27822779 aaaaagttgagtaattattatgagaaaaaatatgaggactctagtcatttaatgttatc 27822721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 22342951 - 22343046
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||||||| ||| ||| || |||  |||||||||||  |||| || | ||| ||||||| ||||||||||||  |||||||||||||||||||    
T  22342951 acccaacccaacccagaaattagtgggcttacccaaactggcccaatagtttaacgggtggatattttacctcacccaaaccggagtaccctatat 22343046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 22354611 - 22354706
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||||||| ||| ||| || |||  |||||||||||  |||| || | ||| ||||||| ||||||||||||  |||||||||||||||||||    
T  22354611 acccaacccaacccagaaattagtgggcttacccaaactggcccaatagtttaacgggtggatattttacctcacccaaaccggagtaccctatat 22354706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 37780979 - 37780892
Alignment:
Q  155 caaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||||||||||| |||  |||||| ||||||||||||||| |||||  | |||||||||||  ||| ||||||| |||||||    
T  37780979 caaaccgaaaactaatgggtttgtccaaacccacccattaatataacgggtgagcgttttacctcacccaaatcggagtatcctatat 37780892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 39918850 - 39918777
Alignment:
Q  23 aaatatagtgaaatagattacacaatttttga--aagaaaataaaatgttcagtaatttttgtgagaaaaaata 94  Q
    |||||||||||||||| ||||| |||||||    |||||||||||| ||| |||||||||| | ||||||||||    
T  39918850 aaatatagtgaaataggttacataatttttttttaagaaaataaaaagttaagtaatttttataagaaaaaata 39918777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 15004271 - 15004203
Alignment:
Q  174 tttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||||||   |||| || | ||| ||||||| ||||||||||||  |||||||||||||||||||    
T  15004271 tttacccaaaccagcccaatagtttaacgggtggatattttacctcacccaaaccggagtaccctatat 15004203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 33365622 - 33365686
Alignment:
Q  178 cccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| ||||||||||| ||| ||||| | ||||||||| |   |||||||||||||||||||    
T  33365622 cccaaacccacccattaatttaacgggtgaatattttacctaatccaaaccggagtaccctatat 33365686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 37675174 - 37675245
Alignment:
Q  23 aaatatagtgaaatagattacacaa--tttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    |||||||||||||||| ||||||||  |||||  ||||||||||||  ||  ||||||||| ||||||||||    
T  37675174 aaatatagtgaaataggttacacaatttttttttaagaaaataaaaatttgtgtaatttttatgagaaaaaa 37675245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 43342880 - 43342988
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       |||||||||||||| |||||||||||||   |||||||||||| ||| |||||||||| ||||||||||    
T  43342880 atattataacttattattttataatgctaaaatatagtgaaataggttacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 43342979  T
Q  93 tatgaggac 101  Q
    || ||||||    
T  43342980 tacgaggac 43342988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 890760 - 890867
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaat 93  Q
    ||||||||||||||||||||||||       |||||||||||||  ||||||||||||   |||||||||||| ||| ||||| |||| |||||||||||    
T  890760 atattataacttattattttataacgttaaaatatagtgaaatatgttacacaattttattaagaaaataaaaagttgagtaaattttatgagaaaaaat 890859  T
Q  94 atgaggac 101  Q
    | ||||||    
T  890860 aggaggac 890867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 23722981 - 23722886
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| |||||| ||| | ||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  23722981 acccaaaccaaaccggaaattaatgggtttgctcaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 23722886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 26688381 - 26688472
Alignment:
Q  149 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctat 240  Q
    ||||||||| ||||||| || ||||||| ||||||| |||||| || ||||| ||||||  ||||||||||||  ||||||||||| |||||    
T  26688381 ccaacccaacccaaaaattagtggatttgcccaaacccacccaatagtataacgggtggttattttacctcactcaaaccggagtatcctat 26688472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 43343042 - 43343127
Alignment:
Q  149 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagta 234  Q
    |||| |||||||  |||||| ||| |||  |||||| |||||||||||||||||||||||| ||||||| |||  |||||||||||    
T  43343042 ccaaaccaaaccggaaactagtgggtttgtccaaacccacccattaatataatgggtggactttttaccacacccaaaccggagta 43343127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 26071106 - 26071038
Alignment:
Q  174 tttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||||||   |||| || | ||| ||||||||||||||||||||  |||||||||||||||||||    
T  26071106 tttacccaaaccggcccaatagtttaacgggtggacattttacctcacccaaaccggagtaccctatat 26071038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 42547148 - 42547052
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataa-tgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||| ||| || ||| ||| ||||||| ||||||||||| |||  ||||||| |||||| || ||  |||||||||||||||||||    
T  42547148 acccaaaccaaaccagaaattagtgggtttgcccaaacccacccattaatttaacggggtggatattttatctaacccaaaccggagtaccctatat 42547052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 7474421 - 7474326
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||||||| ||||||| || ||  |||| ||||||||| ||| | |||||| ||||||  |||||| |||||  ||||||||||| |||||||    
T  7474421 acccaacccaacccaaaaattagtgtgtttaaccaaactcatccaattatataacgggtggttattttatctcactcaaaccggagtatcctatat 7474326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 24221802 - 24221893
Alignment:
Q  149 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctat 240  Q
    ||||||||| ||||||| || ||| ||| |||||||  ||||| || ||||| | ||||  ||||||||||||  |||||||||||||||||    
T  24221802 ccaacccaacccaaaaattagtgggtttgcccaaacctacccaatagtataacgagtggttattttacctcactcaaaccggagtaccctat 24221893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 890969 - 891010
Alignment:
Q  193 taatataatgggtggacattttacctcacataaaccggagta 234  Q
    |||||||||||||||||||||||||||||  |||||| ||||    
T  890969 taatataatgggtggacattttacctcacccaaaccgaagta 891010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 53153371 - 53153403
Alignment:
Q  210 attttacctcacataaaccggagtaccctatat 242  Q
    |||||||||||| ||||||||||||||||||||    
T  53153371 attttacctcacctaaaccggagtaccctatat 53153403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 17437028 - 17437154
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttga---aagaaaataaaatgttcagtaatttttgtgagaaaa 90  Q
    ||||||||||||||||||||||||       |||||||||||||| |||||||||||||     |||||||||||| ||| |||||||||| ||||| ||    
T  17437028 atattataacttattattttataacgctaaaatatagtgaaataggttacacaattttttttttaagaaaataaaaagttgagtaatttttatgagacaa 17437127  T
Q  91 aatatgaggactctagtcatttaatatta 119  Q
    ||||||||||  | |||||||||||||||    
T  17437128 aatatgagga--cgagtcatttaatatta 17437154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 30125787 - 30125882
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||| ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  30125787 acccaaaccaaaccagaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 30125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 18999696 - 18999803
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaat 93  Q
    ||||||||||||||||||||||||       |||||||||||||| ||||||||||||   || ||||||||| ||| ||||| |||| |||||||||||    
T  18999696 atattataacttattattttataacgttaaaatatagtgaaataggttacacaattttattaaaaaaataaaaagttgagtaaattttatgagaaaaaat 18999795  T
Q  94 atgaggac 101  Q
    | ||||||    
T  18999796 aggaggac 18999803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 11172344 - 11172263
Alignment:
Q  23 aaatatagtgaaatagattacacaatttttg-aaagaaaataaaatgttcagtaatttttgtgagaaaaaatatgaggactc 103  Q
    |||||||||||||||| |||| || |||||  ||||||||||||| ||| |||||||||| |||||||| ||| ||||||||    
T  11172344 aaatatagtgaaataggttactcattttttttaaagaaaataaaaagttgagtaatttttatgagaaaatatacgaggactc 11172263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 17437190 - 17437283
Alignment:
Q  149 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||||||| ||||||| ||  ||| ||||||| |||||||||||||||  | ||||  |||||||||||| ||||||||||  |||||||    
T  17437190 ccaacccaaaccgaaaactagtgagtttgcccaaacccacccattaatataacagatggatgttttacctcacacaaaccggagtttcctatat 17437283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 8770074 - 8769985
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtacc 236  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||  ||  |||||||||||||    
T  8770074 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttaccaaacccaaaccggagtacc 8769985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31834382 - 31834480
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaa-tttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaa 91  Q
    ||||||||||||||||||||||||       |||||||||||||| |||||||| |||||  ||||||||||||  ||  ||||||||| |||||||||    
T  31834382 atattataacttattattttataacgctaaaatatagtgaaataggttacacaattttttttaagaaaataaaaatttgtgtaatttttatgagaaaaa 31834480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 3100681 - 3100586
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||| ||| ||||||||||| ||| ||||||| ||||||||| |   |||||||||||||||||||    
T  3100681 acccaaaccaaaccggaaattagtgggtttgcccgaacccacccattaatttaacgggtggatattttacctaatccaaaccggagtaccctatat 3100586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 31834559 - 31834638
Alignment:
Q  163 aaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||| ||| |||||||||| |||||||| ||| || ||||||||||||||||   ||| ||||||| |||||||    
T  31834559 aaactagtgggtttgcccaaactcatccattaatttaacggatggacattttacctcatccaaatcggagtatcctatat 31834638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 6940215 - 6940146
Alignment:
Q  33 aaatagattacacaatttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaatatgaggactc 103  Q
    |||||| ||||||||||||| ||||||| ||||| ||| || ||||||| ||| ||||||||||| |||||    
T  6940215 aaataggttacacaattttttaaagaaa-taaaaagttgagcaatttttatgaaaaaaaatatgaagactc 6940146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 6940040 - 6939987
Alignment:
Q  189 ccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||||||||||| ||||||||||||  |||  ||||||||||| |||||||    
T  6940040 ccattaatataatggatggacattttacgccacccaaaccggagtatcctatat 6939987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 13601269 - 13601192
Alignment:
Q  163 aaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctat 240  Q
    |||||| ||| ||| ||||||| || ||||||||||||||| |||||||||| | ||||  ||||| |||||| ||||    
T  13601269 aaactagtgggtttgcccaaacccatccattaatataatggatggacatttttcttcacccaaaccagagtactctat 13601192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 18999905 - 18999954
Alignment:
Q  193 taatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||| ||||||||||||||||||||  ||||| |||||| ||||||    
T  18999905 taatataacgggtggacattttacctcacccaaaccagagtactctatat 18999954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 27451525 - 27451649
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       |||||||||||||| |||||||||||||   |||||||||||| ||| |||||||||| ||||||||||    
T  27451525 atattataacttattattttataacgctaaaatatagtgaaataggttacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 27451624  T
Q  93 tatgaggactctagtcatttaatatta 119  Q
    || | |||| |  ||||||||||||||    
T  27451625 tacgtggacgc--gtcatttaatatta 27451649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 27451696 - 27451784
Alignment:
Q  154 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| ||||||| ||  ||| ||||||| |||||||||||||||||||||||| |||||||||||  |||| |||||| |||||||    
T  27451696 ccaaaccgaaaactagtgagttttcccaaacccacccattaatataatgggtggacgttttacctcacccaaactggagtatcctatat 27451784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 8423686 - 8423784
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaatttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       |||||||||||||| ||||||||||||   |||||||||||| ||| ||||| |||| ||||||||||    
T  8423686 atattataacttattattttataacgttaaaatatagtgaaataggttacacaattttattaagaaaataaaaagttgagtaaattttatgagaaaaaa 8423784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 8423852 - 8423947
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||||||| ||||||| ||| |||  ||| || |||||| |||||||| || |||||||||||||||||  |||||||||||| ||||||    
T  8423852 acccaaaccaaaccgaaaactagtgggtttgtccagacccacccagtaatataacggatggacattttacctcacccaaaccggagtactctatat 8423947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 17473760 - 17473669
Alignment:
Q  149 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||| ||||||| |||| || ||  ||||||||||||||||||||||||||| |||||||||  |||||||||  ||||||| ||||| |||||    
T  17473760 ccaaaccaaaccgaaaattagtgagtttacccaaactcacccattaatataacgggtggaca--ttacctcaccgaaaccggggtaccttatat 17473669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 30357430 - 30357525
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| || |||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  30357430 acccaaaccaaaccggaaattagtgggtttgcccaaacccatccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 30357525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 34899313 - 34899218
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||||||||||| ||| || |||| ||||||||| ||  |||||||||||||||||||    
T  34899313 acccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacggatggatattttacctaacccaaaccggagtaccctatat 34899218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 22416593 - 22416498
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| |||| |||  ||  |||||||||||||||||||    
T  22416593 acccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatatttgaccaaacccaaaccggagtaccctatat 22416498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 8371571 - 8371617
Alignment:
Q  196 tataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||| ||||||||||||||||||||  |||||||||||| ||||||    
T  8371571 tataacgggtggacattttacctcacccaaaccggagtactctatat 8371617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 18765219 - 18765142
Alignment:
Q  159 ccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtacc 236  Q
    ||||||| || ||| ||| ||||||| |||||| || ||||| ||||||  ||||||||||||  |||||||||||||    
T  18765219 ccaaaaattagtgggtttgcccaaacccacccaatagtataacgggtggttattttacctcacccaaaccggagtacc 18765142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 21969326 - 21969414
Alignment:
Q  154 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| |||| || ||||||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  21969326 ccaaaccgaaaattagtggatttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 21969414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 220612 - 220557
Alignment:
Q  179 ccaaactcacccattaatataatgggtggacattttacctcacataaaccggagta 234  Q
    ||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  220612 ccaaactcacccattaatataataggtggatattttacctcacctaaaccggagta 220557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 15836776 - 15836681
Alignment:
Q  23 aaatatagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaatatgaggactctagtcatttaatatta 119  Q
    |||||||||||||||| |||||||||||||   |||||||||||| ||| |||||||||| |||||||||||| ||| || |  ||||||||||||||    
T  15836776 aaatatagtgaaataggttacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaatacgagcacgc--gtcatttaatatta 15836681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 38036500 - 38036588
Alignment:
Q  154 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| ||||||| ||| ||| |||||||||| ||||||||||||  ||||||| |||||||||||  |||||| |||| |||||||    
T  38036500 ccaaaccgaaaactagtgggtttgcccaaactcatccattaatataacaggtggacgttttacctcacccaaaccgaagtatcctatat 38036588  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 14796015 - 14796110
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  14796015 acccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 14796110  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 14804889 - 14804984
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  14804889 acccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 14804984  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 14293967 - 14294041
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 221  Q
    |||||| |||||||| |||||| ||| ||| | ||||| ||||||||||||||| |||||||| |||||||||||    
T  14293967 acccaaaccaaaccagaaactagtgggtttgctcaaacccacccattaatataacgggtggacgttttacctcac 14294041  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 38036354 - 38036424
Alignment:
Q  23 aaatatagtgaaatagattacacaa-tttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    |||||||||||||||| |||||||| |||||  |||||||||||| ||| |||||||||| ||||||||||    
T  38036354 aaatatagtgaaataggttacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 38036424  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 15836631 - 15836546
Alignment:
Q  155 caaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctat 240  Q
    |||||| ||| ||| ||||||| || |||| ||||||||||||||| |||||||| ||||  ||||| |||||||||||| |||||    
T  15836631 caaaccgaaagctagtggatttgcctaaacccacccattaatataacgggtggacgttttttctcacctaaaccggagtatcctat 15836546  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 8059639 - 8059703
Alignment:
Q  178 cccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  8059639 cccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 8059703  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 19584564 - 19584469
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| |||||||  ||| || ||| ||| ||||||| ||| ||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  19584564 acccaaaccaaaccggaaattagtgggtttgcccaaacccactcattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 19584469  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 14293818 - 14293888
Alignment:
Q  23 aaatatagtgaaatagattacacaattttt-gaaagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    |||||||||||||||| |||||||||||||   |||||||||||| ||| | |||||||| ||||||||||    
T  14293818 aaatatagtgaaataggttacacaatttttattaagaaaataaaaagttgattaatttttatgagaaaaaa 14293888  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 39331182 - 39331269
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagta 234  Q
    |||||| ||||||| ||||||| ||| |||  |||||| || |||||||||||| || ||||| |||||||||||  ||||| |||||    
T  39331182 acccaaaccaaaccgaaaactagtgggtttgtccaaacccaaccattaatataacggatggacgttttacctcacccaaaccagagta 39331269  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 40710149 - 40710220
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacct 218  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| |||||||||    
T  40710149 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacct 40710220  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 50050386 - 50050449
Alignment:
Q  179 ccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||||||||||||| ||| ||||||| ||||||||| ||  |||||||| || |||||||    
T  50050386 ccaaactcacccattaatttaacgggtggatattttacctaacccaaaccggaatatcctatat 50050449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 51250763 - 51250669
Alignment:
Q  148 cccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    ||||| ||||||| |||| || ||| ||| || |||||||||||||||| ||| || || | ||||||||| ||  ||| |||||||||||||||    
T  51250763 cccaaaccaaaccgaaaattagtgggtttgcctaaactcacccattaatttaacggatgaatattttacctaacccaaatcggagtaccctatat 51250669  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 32829485 - 32829396
Alignment:
Q  151 aacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctat 240  Q
    ||||||| ||||||| || |||||||  |||||| |||||| || ||||| | ||||  ||||||||||||  ||||||||||| |||||    
T  32829485 aacccaacccaaaaattagtggatttgtccaaacccacccaatagtataacgagtggttattttacctcacccaaaccggagtagcctat 32829396  T

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Target: scaffold0001 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 396985 - 396890
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||    
T  396985 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatat 396890  T

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Target: scaffold0123 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 26527 - 26440
Alignment:
Q  147 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagta 234  Q
    |||||| ||||||| ||||||| ||| ||| | ||||  |||||||||||||||||||||||| ||||| || || ||||||||||||    
T  26527 acccaaaccaaaccgaaaactagtggttttgcgcaaatccacccattaatataatgggtggacgttttatcttacctaaaccggagta 26440  T

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Target: scaffold0123; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26695 - 26587
Alignment:
Q  1 atattataacttattattttataa-------atatagtgaaatagattacacaa-tttttgaaagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    ||||||||||||||||||||||||       |||||||||||||| ||| |||| |||||  |||||||||||| ||| | |||||||| || |||||||    
T  26695 atattataacttattattttataacgctataatatagtgaaataggttaaacaaatttttttaagaaaataaaaagttgaataatttttatgggaaaaaa 26596  T
Q  93 tatgaggac 101  Q
    || ||||||    
T  26595 tacgaggac 26587  T

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Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 28735 - 28823
Alignment:
Q  154 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctatat 242  Q
    |||||||  |||||| ||| |||  |||||| ||||||||||||||||||||| ||||||||||||||  ||| || |||| |||||||    
T  28735 ccaaaccggaaactagtgggtttgtccaaacccacccattaatataatgggtgaacattttacctcacccaaatcgaagtatcctatat 28823  T

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Target: scaffold0017; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 28587 - 28653
Alignment:
Q  27 atagtgaaatagattacacaatttttga-aagaaaataaaatgttcagtaatttttgtgagaaaaaa 92  Q
    |||||||||||| |||||||||||||   |||||||||||| ||| |||||||||| ||||||||||    
T  28587 atagtgaaataggttacacaattttttttaagaaaataaaaagttgagtaatttttatgagaaaaaa 28653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 2748 - 2839
Alignment:
Q  149 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctat 240  Q
    ||||||||| ||||||| || ||| |||  |||||| |||||| |||||||| ||||||  ||||||||||||  |||| | ||||||||||    
T  2748 ccaacccaacccaaaaattagtgggtttgtccaaacccacccaataatataacgggtggttattttacctcacccaaactgaagtaccctat 2839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 4415 - 4506
Alignment:
Q  149 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcacataaaccggagtaccctat 240  Q
    ||||||||| ||||||| || ||| |||  |||||| |||||| |||||||| ||||||  ||||||||||||  |||| | ||||||||||    
T  4415 ccaacccaacccaaaaattagtgggtttggccaaacccacccaataatataacgggtggttattttacctcacccaaactgaagtaccctat 4506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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