View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_low_3 (Length: 529)

Name: NF20160_low_3
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_low_3
NF20160_low_3
[»] chr8 (11 HSPs)
chr8 (102-512)||(9050758-9051164)
chr8 (21-106)||(32927961-32928046)
chr8 (88-178)||(3278967-3279057)
chr8 (45-115)||(32767447-32767519)
chr8 (21-69)||(9051161-9051209)
chr8 (21-63)||(43361292-43361334)
chr8 (45-78)||(10552936-10552969)
chr8 (21-106)||(35495059-35495144)
chr8 (43-159)||(36447701-36447815)
chr8 (43-115)||(16972017-16972089)
chr8 (191-235)||(41614767-41614811)
[»] chr1 (10 HSPs)
chr1 (44-256)||(18325062-18325275)
chr1 (44-115)||(35961428-35961499)
chr1 (27-106)||(5268288-5268367)
chr1 (67-171)||(24697575-24697678)
chr1 (43-107)||(34915134-34915198)
chr1 (55-106)||(213246-213297)
chr1 (29-106)||(7524182-7524259)
chr1 (43-84)||(23628732-23628772)
chr1 (46-78)||(32365144-32365176)
chr1 (123-171)||(41516992-41517040)
[»] chr5 (6 HSPs)
chr5 (123-253)||(10859871-10860002)
chr5 (21-103)||(117427-117509)
chr5 (43-84)||(7178827-7178867)
chr5 (21-78)||(14299423-14299480)
chr5 (28-84)||(10859769-10859825)
chr5 (44-108)||(34101840-34101904)
[»] chr7 (5 HSPs)
chr7 (21-103)||(40491650-40491732)
chr7 (32-105)||(45557435-45557508)
chr7 (46-106)||(40561714-40561774)
chr7 (44-109)||(12306789-12306854)
chr7 (21-77)||(42481821-42481877)
[»] chr2 (9 HSPs)
chr2 (21-115)||(15220792-15220886)
chr2 (45-96)||(3853932-3853983)
chr2 (45-160)||(28206692-28206807)
chr2 (32-115)||(4894099-4894182)
chr2 (104-218)||(6925647-6925761)
chr2 (44-106)||(16518847-16518909)
chr2 (32-106)||(40401585-40401659)
chr2 (67-171)||(11510958-11511061)
chr2 (202-253)||(37649603-37649655)
[»] chr6 (6 HSPs)
chr6 (19-84)||(765314-765379)
chr6 (30-99)||(25208702-25208771)
chr6 (21-107)||(46219-46305)
chr6 (21-102)||(1499973-1500054)
chr6 (51-115)||(34620946-34621010)
chr6 (51-115)||(34748383-34748447)
[»] scaffold0361 (1 HSPs)
scaffold0361 (21-115)||(14045-14139)
[»] chr4 (5 HSPs)
chr4 (44-118)||(33843768-33843842)
chr4 (46-84)||(54487248-54487286)
chr4 (43-84)||(53914919-53914959)
chr4 (22-78)||(46507969-46508025)
chr4 (204-253)||(55085133-55085184)
[»] chr3 (7 HSPs)
chr3 (21-115)||(35264342-35264436)
chr3 (27-100)||(1441344-1441417)
chr3 (21-78)||(24916581-24916638)
chr3 (29-98)||(41591292-41591361)
chr3 (193-253)||(52925731-52925792)
chr3 (48-104)||(7262885-7262941)
chr3 (45-85)||(23496351-23496391)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 102 - 512
Target Start/End: Complemental strand, 9051164 - 9050758
Alignment:
Q  102 ttgaatattaaattcgatataaaaaatcaatagttgaggcaaaaactccaaattctagtttcaagttagagccaattctcctcaagaagatccaaacaat 201  Q
    ||||||||||| |||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||| |||    
T  9051164 ttgaatattaagttcgataccaaatatcaattgttgaggcaaaaactccaaattctagtttcaagttagaaccaattctccttgagaagatccaaaaaat 9051065  T
Q  202 tcaaaatcaattctatagctctagattcaattttactcctccaaaagtggaaacacac-----ctcatgagtaaatgtttggaatcacgacgagttcgac 296  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |     ||| |||||||||||| |||||||||| |||||||||    
T  9051064 tcaaaatgaattctatagctctagattcaattttactcctccaaaagtggaaacatgcatacactcgtgagtaaatgttcggaatcacgatgagttcgac 9050965  T
Q  297 aaaatctaggtagtattgtaattttgttaaagcttcaaaatgtagatttcgccacatagtgattttgaaaaacacactatcaatccaaatatgcagactt 396  Q
    |||||||||||||||||||||| ||| |       ||||||||||||||  || ||  ||||||||| ||||| |||  |||||||||||||||||||||    
T  9050964 aaaatctaggtagtattgtaatgttgct-------caaaatgtagatttttccgca--gtgattttggaaaactcaccgtcaatccaaatatgcagactt 9050874  T
Q  397 agaacaagaaaataaagcgaaaaagagggtgaaactaaaacctgttgtgaaaaagcttgggacaaggacttttccctcttcattgctgcttctttcctct 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9050873 agaacaagaaaataaagcgaaaaagagggtgaaactaaaacctgttgtgaaaatgcttgggacaaggacttttccctcttcattgctgcttctttcctct 9050774  T
Q  497 gctgcaacatggcctt 512  Q
    ||||||||||||||||    
T  9050773 gctgcaacatggcctt 9050758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 32928046 - 32927961
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 106  Q
    ||||| |||||||||| |||| ||||||| ||||||||| | | | |||||| ||||| ||||| | |||||||||||||||||||    
T  32928046 tgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaa 32927961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 3279057 - 3278967
Alignment:
Q  88 catgtaaaagtgagttgaatattaaattcgatataaaaaatcaatagttgaggcaaaaactccaaattctagtttcaagttagagccaatt 178  Q
    ||||||||||||||||||| |||||||| ||  | |||| | ||  ||||||||| || || |||||||||| ||||||||||| ||||||    
T  3279057 catgtaaaagtgagttgaacattaaatttgaggttaaaagttaactgttgaggcagaagcttcaaattctagattcaagttagaaccaatt 3278967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 32767519 - 32767447
Alignment:
Q  45 taaaagtgagttgaatgtacattgatttatgtttcgatacttcca--tgtaaaagtgagttgaatattaaatt 115  Q
    ||||||||||||| ||||| |||||||||||||| ||||| | ||  ||||||||||||||||| | ||||||    
T  32767519 taaaagtgagttggatgtaaattgatttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatt 32767447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 9051209 - 9051161
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattga 69  Q
    |||||||| ||||||||   |||||||||||||||||||||||||||||    
T  9051209 tgattgtgcaaaattggaaataactaaaagtgagttgaatgtacattga 9051161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 43361292 - 43361334
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgta 63  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||    
T  43361292 tgattttgtataattggttctagctaaaagtgagttgaatgta 43361334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 10552936 - 10552969
Alignment:
Q  45 taaaagtgagttgaatgtacattgatttatgttt 78  Q
    ||||||||||||||||||| ||||||||||||||    
T  10552936 taaaagtgagttgaatgtaaattgatttatgttt 10552969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 35495144 - 35495059
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 106  Q
    ||||| |||||||||| |||| | |||||||| ||||||| || | |||||| ||||| ||||  | ||||||||||| |||||||    
T  35495144 tgattatgtaaaattgcttctgattaaaagtgggttgaatataaagtgatttgtgtttggatatattcatgtaaaagtaagttgaa 35495059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 36447701 - 36447815
Alignment:
Q  43 actaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcgatataaaaaatcaatagttgaggca 142  Q
    |||||||||||||||||| || | |||||| ||||| ||||| |  ||||| || ||||||||||| |||||| |||   |||| ||||| || |||  |    
T  36447701 actaaaagtgagttgaatataaaatgatttgtgtttagatacatttatgtataactgagttgaataataaatttgattctaaaactcaattgtagag--a 36447798  T
Q  143 aaaactccaaattctag 159  Q
    ||| |||||||||||||    
T  36447799 aaagctccaaattctag 36447815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 16972017 - 16972089
Alignment:
Q  43 actaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 115  Q
    ||||||||||||||||| ||| | |||||| |||||  |||| | ||||||||||||| ||||| | ||||||    
T  16972017 actaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatt 16972089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 41614811 - 41614767
Alignment:
Q  191 atccaaacaattcaaaatcaattctatagctctagattcaatttt 235  Q
    |||||||||| |||||||||||| |||| ||||||| ||||||||    
T  41614811 atccaaacaagtcaaaatcaattttatacctctagaatcaatttt 41614767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 18325062 - 18325275
Alignment:
Q  44 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcgatataaaaaatcaatagttgaggcaa 143  Q
    |||||||| | |||||| || | |||||||||| | ||||| | |||||||||||| |||||||| |||||  ||    |||||||||| || ||  |||    
T  18325062 ctaaaagtcacttgaatataaagtgatttatgtatggatacattcatgtaaaagtgggttgaataataaatctgaggataaaaatcaattgtagaaacaa 18325161  T
Q  144 aaactccaaattctagtttcaagttagagccaattctcctcaagaagatccaaacaattcaaaatcaattctatagctctagattcaatttt-actcctc 242  Q
    ||||||| ||||||  |||||||||| |  ||||||| ||| |||| |||||||||  ||||||||||||||  |  ||| || ||| ||||  ||||||    
T  18325162 aaactcctaattctgatttcaagttaaaatcaattctactcgagaaaatccaaacatgtcaaaatcaattcttcacatctggaatcacttttgtctcctc 18325261  T
Q  243 caaaagtggaaaca 256  Q
    ||||||||||||||    
T  18325262 caaaagtggaaaca 18325275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 35961499 - 35961428
Alignment:
Q  44 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 115  Q
    |||||||||||||||| ||| | ||||||||||||| |||| | |||||||||||||||||||| |||||||    
T  35961499 ctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaattttaaatt 35961428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 5268367 - 5268288
Alignment:
Q  27 tgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 106  Q
    |||||||||| ||||  |||||||||||||||||||| | |||||| |||||  |||  | |||||||||||||||||||    
T  5268367 tgtaaaattgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttgaa 5268288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 24697575 - 24697678
Alignment:
Q  67 tgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcgatataaaaaatcaatagttgaggcaaaaactccaaattctagtttcaag 166  Q
    |||||||||||| ||||| |  |||||||||||||||||| | |||||| || |  ||| |||||| |  ||||||||| || ||||||||| |||||||    
T  24697575 tgatttatgtttggatacgtttatgtaaaagtgagttgaaca-taaattggagactaaatatcaattgcagaggcaaaagcttcaaattctaatttcaag 24697673  T
Q  167 ttaga 171  Q
    |||||    
T  24697674 ttaga 24697678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 34915198 - 34915134
Alignment:
Q  43 actaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaat 107  Q
    ||||||||||||||| | ||| | ||||||||||||  |||| | ||||||||||||||||||||    
T  34915198 actaaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaat 34915134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 213246 - 213297
Alignment:
Q  55 ttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 106  Q
    ||||||||| | |||||||||||| ||||| | |||||||||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaa 213297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 7524259 - 7524182
Alignment:
Q  29 taaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 106  Q
    |||||||| ||||||||||||||||| | || ||| | |||||| ||||| || || |  ||||||||||||||||||    
T  7524259 taaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaa 7524182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 23628732 - 23628772
Alignment:
Q  43 actaaaagtgagttgaatgtacattgatttatgtttcgatac 84  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  23628732 actaaaagtgagttgaatgta-attgatttatgtttggatac 23628772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 32365176 - 32365144
Alignment:
Q  46 aaaagtgagttgaatgtacattgatttatgttt 78  Q
    |||||||||||||||||| ||||||||||||||    
T  32365176 aaaagtgagttgaatgtaaattgatttatgttt 32365144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 41517040 - 41516992
Alignment:
Q  123 aaaaatcaatagttgaggcaaaaactccaaattctagtttcaagttaga 171  Q
    |||||||||| |  ||||||||||||||||||||||  |||||||||||    
T  41517040 aaaaatcaattgaagaggcaaaaactccaaattctaacttcaagttaga 41516992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 10859871 - 10860002
Alignment:
Q  123 aaaaatcaatagttgaggcaaaaactccaaattctagtttcaagttagagccaattctcctcaagaagatccaaacaattcaaaatcaattctatagctc 222  Q
    |||||||||  |||||||||||| ||||||||||||| |||||||||||  ||||||| | | |||| || ||||||  ||||||||| ||||| | |||    
T  10859871 aaaaatcaaatgttgaggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctc 10859970  T
Q  223 tagattcaatttt-actcctccaaaagtggaa 253  Q
    || | | ||||||  ||| |||||||||||||    
T  10859971 tataatgaattttgcctcttccaaaagtggaa 10860002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 117427 - 117509
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagtt 103  Q
    ||||| ||||| |||| |||| |||| |||||||||||| ||| | ||||| |||||| ||||| || |||||||||||||||    
T  117427 tgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 117509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 7178867 - 7178827
Alignment:
Q  43 actaaaagtgagttgaatgtacattgatttatgtttcgatac 84  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  7178867 actaaaagtgagttgaatgta-attgatttatgtttggatac 7178827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 14299480 - 14299423
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 78  Q
    |||||||||||||||| |||||  ||||||||||||||| ||| | |||||| |||||    
T  14299480 tgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgttt 14299423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 10859769 - 10859825
Alignment:
Q  28 gtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatac 84  Q
    ||||||||| || ||||||||||| ||||||||| | | |||||||||||| |||||    
T  10859769 gtaaaattgattataactaaaagtaagttgaatgcaaagtgatttatgtttagatac 10859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 34101904 - 34101840
Alignment:
Q  44 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaata 108  Q
    ||||||||||||||||| || | |||||||||||| || || | |||| ||| ||||||||||||    
T  34101904 ctaaaagtgagttgaatctatagtgatttatgtttggaaacgttcatgcaaatgtgagttgaata 34101840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 40491732 - 40491650
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagtt 103  Q
    ||||| |||||||||| || | ||||||||||||||||| ||| | |||||||| ||| ||||| | ||||||||||||||||    
T  40491732 tgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagtt 40491650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 45557508 - 45557435
Alignment:
Q  32 aattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttga 105  Q
    ||||| |||| ||||||||||||||||| ||| | |||||| ||||| ||||| | ||||||||||||||||||    
T  45557508 aattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttga 45557435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 40561714 - 40561774
Alignment:
Q  46 aaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 106  Q
    |||| ||||||||| ||| | |||||||||||| ||||| | |||||||||||||||||||    
T  40561714 aaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaa 40561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 12306854 - 12306789
Alignment:
Q  44 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatat 109  Q
    ||||||||||||||||  || | |||||||||||| | ||  | ||||||||||||||||||||||    
T  12306854 ctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaatat 12306789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 42481821 - 42481877
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtt 77  Q
    ||||| |||||||||| |||| |  |||||||||||||||||| | |||||||||||    
T  42481821 tgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgtt 42481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 15220792 - 15220886
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 115  Q
    ||||| ||||| |||| || | || |||||||||||||||||| | |||||||||||| ||||| | ||||| ||||||||||||| | ||||||    
T  15220792 tgattttgtaatattgattatgacgaaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 3853983 - 3853932
Alignment:
Q  45 taaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaa 96  Q
    ||||||||||||||||||| |||||||||||||| ||||| | |||||||||    
T  3853983 taaaagtgagttgaatgtaaattgatttatgtttggatacattcatgtaaaa 3853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 28206807 - 28206692
Alignment:
Q  45 taaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcgatataaaaaatcaatagttgaggcaaa 144  Q
    |||| |||||||||||||| ||| |||||||||| | ||| | |||||||||||  |||||||| |||||| || |  |||||||||| ||  |||||||    
T  28206807 taaatgtgagttgaatgtaaattaatttatgtttaggtacattcatgtaaaagtttgttgaataataaatttgagactaaaaatcaatggtataggcaaa 28206708  T
Q  145 aactccaaattctagt 160  Q
     |||| ||||| ||||    
T  28206707 gactctaaattttagt 28206692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 4894099 - 4894182
Alignment:
Q  32 aattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 115  Q
    ||||| ||||| |||||| | ||||||| ||| | |||||||||||| ||||| | ||| ||||||||| ||||||| ||||||    
T  4894099 aattgattctagctaaaattaagttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatt 4894182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 6925761 - 6925647
Alignment:
Q  104 gaatattaaattcgatataaaaaatcaatagttgaggcaaaaactccaaattctagtttcaagttagagccaattctcctcaagaagatccaaacaattc 203  Q
    |||| |||||||| || | |||||||||| |||||   |||| ||||||||||||  ||||||| |||  ||||||| |||||||| || ||||||  ||    
T  6925761 gaatgttaaattctatgttaaaaatcaatcgttgaactaaaatctccaaattctaacttcaagtaagaatcaattctactcaagaatatacaaacatgtc 6925662  T
Q  204 aaaatcaattctata 218  Q
    ||||| |||| ||||    
T  6925661 aaaattaattttata 6925647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 16518909 - 16518847
Alignment:
Q  44 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 106  Q
    |||||||||||||||  ||| | |||||| ||||| ||||| | |||||||||||||||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaa 16518847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 40401585 - 40401659
Alignment:
Q  32 aattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 106  Q
    |||||||||  ||||||| ||||||||| ||| | | |||||||||| ||||| | ||||||||||| |||||||    
T  40401585 aattggttcctactaaaaatgagttgaaggtagactaatttatgtttggatacattcatgtaaaagtcagttgaa 40401659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 11511061 - 11510958
Alignment:
Q  67 tgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcgatataaaaaatcaatagttgaggcaaaaactccaaattctagtttcaag 166  Q
    |||||||||||| | ||| | ||| |||||||| |||||| | |||||| ||  |  ||||| ||| || ||||||||||||||||||||||| ||||||    
T  11511061 tgatttatgtttagctacattcatataaaagtgggttgaacaataaatttgaggt-taaaataaattgtagaggcaaaaactccaaattctagcttcaag 11510963  T
Q  167 ttaga 171  Q
     ||||    
T  11510962 ataga 11510958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 37649603 - 37649655
Alignment:
Q  202 tcaaaatcaattctatagctctagattcaatttt-actcctccaaaagtggaa 253  Q
    ||||||||||||| ||| ||| ||| |||||||| ||||||||||||||||||    
T  37649603 tcaaaatcaattccatacctcaagaatcaattttgactcctccaaaagtggaa 37649655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 765314 - 765379
Alignment:
Q  19 aatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatac 84  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||| | |||||| |||||| ||||    
T  765314 aatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgatttgtgtttccatac 765379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 25208771 - 25208702
Alignment:
Q  30 aaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtg 99  Q
    ||||||| || ||| ||||||||||||||||||| | |||||||||||||||||  |  |||||||||||    
T  25208771 aaaattgattttaattaaaagtgagttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtg 25208702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 46219 - 46305
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaat 107  Q
    ||||| |||||||||| |||||||||||||||||||| |  || | | |||| ||||| ||||| | | || |||||||||||||||    
T  46219 tgattctgtaaaattgattctaactaaaagtgagttgcaattaaagttatttgtgtttggatacattcgtggaaaagtgagttgaat 46305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 1500054 - 1499973
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagt 102  Q
    ||||| |||||||||| || |  ||||||| ||||||| |||| ||||||||||||||  |||| |  ||||||||||||||    
T  1500054 tgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtgagt 1499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 34621010 - 34620946
Alignment:
Q  51 tgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 115  Q
    ||||||||| ||| | |||||||||||| ||||| |  |||||||||||||||||| | ||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaatt 34620946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 34748447 - 34748383
Alignment:
Q  51 tgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 115  Q
    ||||||||| ||| | |||||||||||| ||||| |  |||||||||||||||||| | ||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaatt 34748383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 14045 - 14139
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 115  Q
    ||||| |||||||||| ||||  ||| || ||||||||| ||| | |||||||||||| ||||| | ||||| ||||||||||||| | ||||||    
T  14045 tgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatt 14139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 33843842 - 33843768
Alignment:
Q  44 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcga 118  Q
    |||||||||||||| ||||| | |||||||||||| ||||  | ||||||| ||||||||||| | |||||||||    
T  33843842 ctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaattcga 33843768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 54487248 - 54487286
Alignment:
Q  46 aaaagtgagttgaatgtacattgatttatgtttcgatac 84  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  54487248 aaaagtgagttgaatgtaaattgatttatgtttggatac 54487286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 53914959 - 53914919
Alignment:
Q  43 actaaaagtgagttgaatgtacattgatttatgtttcgatac 84  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  53914959 actaaaagtgagttgaatgta-attgatttatgtttggatac 53914919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 46507969 - 46508025
Alignment:
Q  22 gattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 78  Q
    |||| |||||||||| |||||| ||||||||||| |||| || | ||||||||||||    
T  46507969 gattttgtaaaattgattctaaataaaagtgagtggaatataaagtgatttatgttt 46508025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 55085133 - 55085184
Alignment:
Q  204 aaaatcaattctatagctctagattcaa--ttttactcctccaaaagtggaa 253  Q
    ||||||||||||||| ||||||| ||||  |||| |||||||||||||||||    
T  55085133 aaaatcaattctatacctctagaatcaatttttttctcctccaaaagtggaa 55085184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 35264342 - 35264436
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 115  Q
    ||||| |||||||||| || |||| |||||||||||||| ||| | ||| |||||||| | ||| | ||||||||| ||| ||||| | ||||||    
T  35264342 tgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatt 35264436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 1441344 - 1441417
Alignment:
Q  27 tgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtga 100  Q
    |||||||||| ||||  |||||||||||||||| ||| | |||||| ||||| ||||| | || ||||||||||    
T  1441344 tgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaaagtga 1441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 24916638 - 24916581
Alignment:
Q  21 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 78  Q
    ||||| |||||||||| |||   |||||||||||||||||||| | ||||||||||||    
T  24916638 tgattttgtaaaattgattcaggctaaaagtgagttgaatgtaaaatgatttatgttt 24916581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 41591292 - 41591361
Alignment:
Q  29 taaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagt 98  Q
    |||||| ||||||  |||||| |||||||||| || | |||||||||||| ||||| | |||||||||||    
T  41591292 taaaataggttcttgctaaaaatgagttgaatttaaagtgatttatgtttggatacattcatgtaaaagt 41591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 52925731 - 52925792
Alignment:
Q  193 ccaaacaattcaaaatcaattctatagctctagattcaatttt-actcctccaaaagtggaa 253  Q
    |||||||  |||||||||||| || | ||||||| |||||||| ||||||||||||||||||    
T  52925731 ccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaa 52925792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 7262941 - 7262885
Alignment:
Q  48 aagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttg 104  Q
    |||||||||||| ||| | || ||||||||| ||||| | |||||||||||||||||    
T  7262941 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttg 7262885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 23496391 - 23496351
Alignment:
Q  45 taaaagtgagttgaatgtacattgatttatgtttcgatact 85  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  23496391 taaaagtgagttgaatgtgaattgatttatgtttggatact 23496351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University