View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20160_low_6 (Length: 460)
Name: NF20160_low_6
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20160_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 30 - 442
Target Start/End: Original strand, 48622883 - 48623292
Alignment:
| Q |
30 |
acattgtgcatatgtgagagactatgctatttatatagcaatacttgttacacaagttacttcatttacaaactatcttataacaacttttttaactaac |
129 |
Q |
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| T |
48622883 |
acattgtgcatatgtgagagactatgctatttatatagcaatacttgttacacaagttacttcatttacaaactatctcataacaacttttttaactaac |
48622982 |
T |
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| Q |
130 |
taaactactccaacaaactgaattacacttctaccacaatataccgtttataatctgtttgatgcccgataaacttcgttttatttattttgtcggaata |
229 |
Q |
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| T |
48622983 |
taaactactccaacaaactgaattacacttctaccacaatatactgtttataatcggtttgatgcacgataaacttcgttttatttattttgtcggaata |
48623082 |
T |
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| Q |
230 |
taataataatcgttacattgattgcatgagaataaagtattcgtatagtttttacaccaagtttcccaagcttttacttttttctacaaaaaatatagtc |
329 |
Q |
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| T |
48623083 |
taa---taatcgttacattgaatgcatgagactaaagtattcgtatagtttttacaccaagtttcccaagctttttcttttttctacaaaaaatatagtc |
48623179 |
T |
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| Q |
330 |
tggggaaagagtatatactcgtaaaagaagatatatgcttatttgaagaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgacag |
429 |
Q |
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| T |
48623180 |
tggggaaagagtatatactcgtaaaagaagatatatgcttatttgaagaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgacag |
48623279 |
T |
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| Q |
430 |
gtttgctttattc |
442 |
Q |
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| T |
48623280 |
gtttgctttattc |
48623292 |
T |
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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 4928136 - 4928076
Alignment:
| Q |
102 |
ctatcttataacaacttttttaactaactaaactactccaacaaactgaattacacttcta |
162 |
Q |
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| T |
4928136 |
ctatcttaaaacaactttcttaactaactaaactactctaccaaactgaattacacttcta |
4928076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 38653330 - 38653416
Alignment:
| Q |
44 |
tgagagactatgctatttatatagcaatacttgttacacaagttacttcatttacaaactatcttataacaacttttttaactaact |
130 |
Q |
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| T |
38653330 |
tgagagactgtgctatctatagagtaatgcttgttacacaagttacttcatatgcaagctatctcataagaactttcttaactaact |
38653416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 38653422 - 38653461
Alignment:
| Q |
123 |
aactaactaaactactccaacaaactgaattacacttcta |
162 |
Q |
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| T |
38653422 |
aactaactaaactactctaacaaactgaattacacttcta |
38653461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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