View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20160_low_8 (Length: 437)

Name: NF20160_low_8
Description: NF20160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20160_low_8
NF20160_low_8
[»] chr3 (7 HSPs)
chr3 (120-420)||(53641424-53641720)
chr3 (121-173)||(4275200-4275252)
chr3 (120-180)||(53605714-53605774)
chr3 (124-215)||(11465576-11465667)
chr3 (120-153)||(52299102-52299135)
chr3 (121-193)||(30364025-30364097)
chr3 (127-180)||(32734748-32734801)
[»] chr4 (17 HSPs)
chr4 (122-198)||(21988430-21988506)
chr4 (120-198)||(5047264-5047342)
chr4 (126-200)||(28695832-28695906)
chr4 (120-198)||(46521564-46521642)
chr4 (120-173)||(54495541-54495594)
chr4 (120-164)||(46088518-46088562)
chr4 (135-198)||(23135382-23135445)
chr4 (120-198)||(10042906-10042984)
chr4 (122-198)||(33266787-33266864)
chr4 (120-164)||(30161349-30161393)
chr4 (156-198)||(41689899-41689941)
chr4 (120-197)||(24753988-24754065)
chr4 (158-202)||(20176541-20176585)
chr4 (120-172)||(20180217-20180269)
chr4 (121-192)||(20787454-20787525)
chr4 (128-194)||(5091816-5091881)
chr4 (120-173)||(25751694-25751747)
[»] chr7 (9 HSPs)
chr7 (120-202)||(5248597-5248679)
chr7 (120-198)||(26803987-26804065)
chr7 (120-193)||(47405203-47405276)
chr7 (121-199)||(41514258-41514336)
chr7 (120-198)||(17883280-17883359)
chr7 (121-173)||(26402775-26402827)
chr7 (143-198)||(26284-26339)
chr7 (153-199)||(6387644-6387690)
chr7 (122-162)||(33899740-33899780)
[»] chr5 (10 HSPs)
chr5 (120-202)||(42265496-42265578)
chr5 (120-198)||(591192-591270)
chr5 (120-198)||(23129402-23129480)
chr5 (120-198)||(27146932-27147010)
chr5 (120-199)||(40458998-40459077)
chr5 (120-201)||(40872300-40872379)
chr5 (120-200)||(13978599-13978678)
chr5 (120-199)||(39046995-39047074)
chr5 (120-173)||(41520725-41520778)
chr5 (121-151)||(8415751-8415781)
[»] chr6 (3 HSPs)
chr6 (122-198)||(24797475-24797551)
chr6 (120-198)||(29408063-29408142)
chr6 (122-173)||(9975045-9975096)
[»] chr1 (11 HSPs)
chr1 (120-198)||(698794-698872)
chr1 (120-198)||(25670739-25670817)
chr1 (120-198)||(44958275-44958353)
chr1 (120-198)||(3483100-3483178)
chr1 (120-194)||(5224853-5224927)
chr1 (121-198)||(45925554-45925631)
chr1 (126-198)||(49003715-49003787)
chr1 (120-203)||(43492092-43492174)
chr1 (120-202)||(31822448-31822530)
chr1 (120-203)||(28188682-28188764)
chr1 (121-198)||(30494119-30494197)
[»] chr8 (8 HSPs)
chr8 (120-198)||(33650068-33650146)
chr8 (120-198)||(44254096-44254173)
chr8 (120-203)||(38236220-38236303)
chr8 (120-169)||(34336470-34336519)
chr8 (120-173)||(42704365-42704418)
chr8 (120-168)||(9774807-9774855)
chr8 (120-164)||(15271078-15271122)
chr8 (143-201)||(24457910-24457968)
[»] chr2 (5 HSPs)
chr2 (120-198)||(27501703-27501781)
chr2 (120-181)||(18375122-18375183)
chr2 (121-201)||(63946-64022)
chr2 (165-202)||(13530516-13530553)
chr2 (141-198)||(28572532-28572589)
[»] scaffold0019 (1 HSPs)
scaffold0019 (153-201)||(67394-67442)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 120 - 420
Target Start/End: Complemental strand, 53641720 - 53641424
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttcctattgttaatactttgtg 219  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||    
T  53641720 gcattgatttcataaactttgacaaaaacttactattcaaagttattaaacaatatcttaagtatacttgttaacatttccctattgttaatactttgtg 53641621  T
Q  220 tatgcttgttattgtggtggaattaataccgaatttctgcacatttgacatagcttctgtaaaatcatggcatatcttctgcacttgaaacgtgagaagt 319  Q
    |||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53641620 tatgcttgctattgtggtggaat----accgaatttctgcacatttgacatagcttctgtaaaattatggcatatcttctgcacttgaaacgtgagaagt 53641525  T
Q  320 gttaaataacctccaaaccaaactgattattgaacggaaatgatcattgttacgagcaatattttaatgaaaatccacgaaagatattaaacggcttatt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53641524 gttaaataacctccaaaccaaactgattattgaacggaaatgatcattgttacgagcaatattttaatgaaaatccacaaaagatattaaacggcttatt 53641425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 4275252 - 4275200
Alignment:
Q  121 cattgatttcataaactttgacaaaaacttattatttaaagttattaaacaat 173  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4275252 cattgattttataaactttgacaaaaacttattatttaaagttattaaacaat 4275200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 53605714 - 53605774
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaa 180  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||| |||||    
T  53605714 gcattgattttataaactttgataaaaacttactatttaaagttactaaacaataccctaa 53605774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 11465667 - 11465576
Alignment:
Q  124 tgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttcctattgttaatactt 215  Q
    |||||||||||||||||||||||||||| |||||||||||  |||| |||  ||||| |||||| |||||| ||| | ||| |||| |||||    
T  11465667 tgatttcataaactttgacaaaaacttactatttaaagtttctaaataatgccctaaagacactcgttaacgtttccatatagttactactt 11465576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 52299102 - 52299135
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttatt 153  Q
    ||||||||||||||||||||||||||||||||||    
T  52299102 gcattgatttcataaactttgacaaaaacttatt 52299135  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 30364097 - 30364025
Alignment:
Q  121 cattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaa 193  Q
    ||||||||||||||||||| ||||||||||  |||||||||||  |||| |||  ||||| |||||| |||||    
T  30364097 cattgatttcataaactttaacaaaaacttgctatttaaagttgctaaataatgccctaaagacactcgttaa 30364025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 32734748 - 32734801
Alignment:
Q  127 tttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaa 180  Q
    ||||||||| ||||||||||||||| || ||||||||| |||| ||| ||||||    
T  32734748 tttcataaattttgacaaaaacttactacttaaagttactaaataatgtcctaa 32734801  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 21988506 - 21988430
Alignment:
Q  122 attgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||    
T  21988506 attgatttcataaactttgacaaaaacttactatttaaagttattaaacaatgtcctaagaacacttattaacattt 21988430  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 5047264 - 5047342
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||| | ||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||    
T  5047264 gcattgatttcataaactttaaaaaaaacttactatttaaagttactaaacaataccctaagaacacttgttaacattt 5047342  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 28695832 - 28695906
Alignment:
Q  126 atttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttc 200  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| || ||| |||||||| ||||||||||||||    
T  28695832 atttcataaactttgacaaaaatttactatttaaagttattaaataacatcttaaggacatttgttaacattttc 28695906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 46521564 - 46521642
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||| ||||||| |||||||||||||| | |||||||| || |||   |||||||||||||||    
T  46521564 gcattgatttcataaactttaacaaaaatttattatttaaagtcactaaacaatgtcttaaaagcacttgttaacattt 46521642  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 54495541 - 54495594
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaat 173  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  54495541 gcattgatttcataaactttgataaaaacttactatttaaagttactaaacaat 54495594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 46088562 - 46088518
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagtta 164  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  46088562 gcattgatttcataaactttgacaaaaacttactatttaaagtta 46088518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 23135445 - 23135382
Alignment:
Q  135 actttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    ||||| ||||||||||| |||||||||||| |||||||| | |||||| |||||||||||||||    
T  23135445 actttaacaaaaacttactatttaaagttactaaacaatgttctaagggcacttgttaacattt 23135382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 10042906 - 10042984
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||| ||| | ||||||||| |||||||||||||||||||||    ||| | |||||||||||||||    
T  10042906 gcattgatttcataaattttaataaaaacttactatttaaagttattaaacaatgctttaaaggcacttgttaacattt 10042984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 33266864 - 33266787
Alignment:
Q  122 attgatttcataaactttgacaaa-aacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||| | ||| |||||| |||||||||||| |||| ||||||||||||  |||| |||||||||    
T  33266864 attgatttcataaacttttaaaaataacttactatttaaagttactaaataatatcctaagggtacttcttaacattt 33266787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 30161393 - 30161349
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagtta 164  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  30161393 gcattgatttcataaactttaacaaaaacttactatttaaagtta 30161349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 41689941 - 41689899
Alignment:
Q  156 ttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  41689941 ttaaagttactaaacaataccctaaggacacttgttaacattt 41689899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 24753988 - 24754065
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacatt 197  Q
    |||||||||||||||||||| | ||||| ||| |||||||||||  ||||||||  ||||||| || || ||||||||    
T  24753988 gcattgatttcataaactttcataaaaatttactatttaaagtttctaaacaatgccctaagggcagtttttaacatt 24754065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 20176585 - 20176541
Alignment:
Q  158 aaagttattaaacaatatcctaaggacacttgttaacattttcct 202  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||    
T  20176585 aaagttattaaacaatgccctaagggcacttgttaacattttcct 20176541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 20180269 - 20180217
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaa 172  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||  |||||||    
T  20180269 gcattaatttcataaactttgacaaaaatttactatttaaagttcctaaacaa 20180217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 20787454 - 20787525
Alignment:
Q  121 cattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgtta 192  Q
    ||||||||||||||||||||||||||  |||  ||||||| | | |||||||| || |||||| ||||||||    
T  20787454 cattgatttcataaactttgacaaaattttaccatttaaaatcactaaacaatgtcataaggatacttgtta 20787525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 5091881 - 5091816
Alignment:
Q  128 ttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaac 194  Q
    |||||||| ||| ||||||| |||||||||||||||| ||||||||  ||||| | |||||||||||    
T  5091881 ttcataaaatttaacaaaaatttattatttaaagttactaaacaatgccctaaag-cacttgttaac 5091816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 25751747 - 25751694
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaat 173  Q
    ||||| ||| ||||| |||| | ||||||||| |||||||||||||||||||||    
T  25751747 gcattaattgcataagctttaataaaaacttactatttaaagttattaaacaat 25751694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 5248679 - 5248597
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttcct 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||| |||||||||| ||||||||    
T  5248679 gcattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaatattttcct 5248597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 26804065 - 26803987
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||||||||||    
T  26804065 gcattgattttataaactttgacaaaaacttactatttaaagttattaaacaatgccctaagggcacttgttaacattt 26803987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 47405276 - 47405203
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaa 193  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||| ||||||||||    
T  47405276 gcattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgtcctgaggccacttgttaa 47405203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 41514336 - 41514258
Alignment:
Q  121 cattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacatttt 199  Q
    |||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||||   ||||||||||||||||    
T  41514336 cattgatttcataaactttgactaaaacttactatttaaagttactaaacaatgtcctaaaagcacttgttaacatttt 41514258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 17883359 - 17883280
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaa-tatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| ||||||| | || ||||||||||| |||||||||    
T  17883359 gcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaattgtcttaaggacacttcttaacattt 17883280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 26402827 - 26402775
Alignment:
Q  121 cattgatttcataaactttgacaaaaacttattatttaaagttattaaacaat 173  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  26402827 cattgatttcataaattttgacaaaaacttactatttaaagttactaaacaat 26402775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 26284 - 26339
Alignment:
Q  143 aaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    ||||| ||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||    
T  26284 aaaaatttattatttaaagttcttaaagaatgtcctaaggacactcgttaatattt 26339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 6387690 - 6387644
Alignment:
Q  153 tatttaaagttattaaacaatatcctaaggacacttgttaacatttt 199  Q
    |||||||||||| ||||||||| ||||| |||| |||||||||||||    
T  6387690 tatttaaagttactaaacaataccctaacgacatttgttaacatttt 6387644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 33899780 - 33899740
Alignment:
Q  122 attgatttcataaactttgacaaaaacttattatttaaagt 162  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  33899780 attgatttcataaattttaacaaaaacttaatatttaaagt 33899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 42265496 - 42265578
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttcct 202  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||| |||||||| |||||||| |||||||||||||||||||    
T  42265496 gcattgatttcataaacttagacaaaaacttactatataaagttactaaacaatgtcctaagggcacttgttaacattttcct 42265578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 591270 - 591192
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||  |||||||||||||||    
T  591270 gcattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgccctaagagcacttgttaacattt 591192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 23129402 - 23129480
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||| || ||||||||||||    
T  23129402 gcattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgccctaagggcatttgttaacattt 23129480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 27146932 - 27147010
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||| || ||||||||||||    
T  27146932 gcattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgccctaagggcatttgttaacattt 27147010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 40458998 - 40459077
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacatttt 199  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||   ||||| ||| ||||||||||||||    
T  40458998 gcattgatttcataaactttgacaaaaacttactctttaaagttattaaacaaagccctaaagacgcttgttaacatttt 40459077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 40872300 - 40872379
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttcc 201  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||  |||||||   ||||||||||||||||    
T  40872300 gcattgatttcataaactttgataaaaacttactatttaaagttactaaacaatgccctaagg--gcttgttaacattttcc 40872379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 13978678 - 13978599
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttc 200  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||| | ||||   |||||||||||||||||    
T  13978678 gcattgatttcataaactttgacaaaa-cttactatttaaaattattaaacaatgttctaaatgcacttgttaacattttc 13978599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 39046995 - 39047074
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacatttt 199  Q
    |||||||||||||||||||||| ||||| | | |||||||||||| |||| |||||  ||||||||||||||||| ||||    
T  39046995 gcattgatttcataaactttgagaaaaattaactatttaaagttactaaataatattttaaggacacttgttaacttttt 39047074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 41520725 - 41520778
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaat 173  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  41520725 gcattgattttataaactttgataaaaacttactatttaaagttattaaacaat 41520778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 8415751 - 8415781
Alignment:
Q  121 cattgatttcataaactttgacaaaaactta 151  Q
    |||||||||||||||||||||||||||||||    
T  8415751 cattgatttcataaactttgacaaaaactta 8415781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 24797475 - 24797551
Alignment:
Q  122 attgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||| ||||    
T  24797475 attgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgtcctaagggcacttgttaatattt 24797551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 29408063 - 29408142
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagtt-attaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||| ||||||||||||||| |||||||||||   |||||||||  | |||| |||||||||||||||    
T  29408063 gcattgatttcataaattttgacaaaaacttactatttaaagttccctaaacaatactccaagggcacttgttaacattt 29408142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 9975096 - 9975045
Alignment:
Q  122 attgatttcataaactttgacaaaaacttattatttaaagttattaaacaat 173  Q
    |||||||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  9975096 attgatttcataaactttaacaaaaatttactatttaaagttactaaacaat 9975045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 698872 - 698794
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||  ||||||| |||||||||||||||    
T  698872 gcattgatttcataaactttgataaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacattt 698794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 25670817 - 25670739
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||  ||||||| |||||||||||||||    
T  25670817 gcattgatttcataaactttaacaaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacattt 25670739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 44958353 - 44958275
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||||||  |||||||||||||||    
T  44958353 gcattgatttcataaactttaacaaaaatttactatttaaagttactaaacaatatcctaagaccacttgttaacattt 44958275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 3483100 - 3483178
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||  |||||||  ||||||||||||||    
T  3483100 gcatcgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgccctaagggtacttgttaacattt 3483178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 5224927 - 5224853
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaac 194  Q
    |||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||    
T  5224927 gcattgattttataaactttaacaaaaacttactatttaaaattattaaacaataccctaaggacatttgttaac 5224853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 45925554 - 45925631
Alignment:
Q  121 cattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |  |||| ||||| ||||||||||    
T  45925554 cattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgttttaagaacactcgttaacattt 45925631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 49003715 - 49003787
Alignment:
Q  126 atttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||  | ||||| |||||||||||||||    
T  49003715 atttcataaactttgacaaaaatttactatttaaagttattaaacaatgccataagggcacttgttaacattt 49003787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 43492174 - 43492092
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttccta 203  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||  ||||||| ||||||||||||||| ||||    
T  43492174 gcattgatttcataaactttgacaaaaatttactatttaaagttactaagcaatgccctaagg-cacttgttaacatttcccta 43492092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 31822448 - 31822530
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttcct 202  Q
    |||||||||| |||||||||||||||| |||| ||| |||||||| |||||||| || |||||  ||||||||||||||||||    
T  31822448 gcattgattttataaactttgacaaaagcttactatctaaagttactaaacaatgtcgtaagggtacttgttaacattttcct 31822530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 28188682 - 28188764
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttccta 203  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||  |||||  ||||||||||| |||| ||||    
T  28188682 gcattgatttcataaa-tttaacaaaaacttactatttaaagttattaaacaatgccctaaaaacacttgttaatatttcccta 28188764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 30494119 - 30494197
Alignment:
Q  121 cattgatttcataaactttgacaaaaacttattattt-aaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||| |||| ||||||||||| ||||| ||| ||| ||||||||   |||| ||||||||||| |||||    
T  30494119 cattgatttcataatctttaacaaaaacttactatttaaaatttactaaacaatgctctaaagacacttgttatcattt 30494197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 33650068 - 33650146
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||| | ||||||||||||||| |||||||||||| ||||||||  ||||||| |||||||||||||||    
T  33650068 gcattgatttcatacattttgacaaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacattt 33650146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 44254173 - 44254096
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| |||| ||| || ||||| |||||||||||||||    
T  44254173 gcattgatttcataaattttgacaaaaacttactatttaaagttactaaa-aatgtcttaagggcacttgttaacattt 44254096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 38236303 - 38236220
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttccta 203  Q
    |||||||||||||||| ||||||||||  ||| |||||||||||||||||||||   ||||||  ||||||||| |||||||||    
T  38236303 gcattgatttcataaattttgacaaaattttactatttaaagttattaaacaatgctctaagggaacttgttaatattttccta 38236220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 34336519 - 34336470
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaa 169  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  34336519 gcattgatttcataaactttgacaaaaacttactatttaaagttactaaa 34336470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 42704365 - 42704418
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaat 173  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  42704365 gcattaatttcataaattttgacaaaaacttactatttaaagttagtaaacaat 42704418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 9774807 - 9774855
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaa 168  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  9774807 gcattgatttcataagctttgacaaaaatttactatttaaagttattaa 9774855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 15271078 - 15271122
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagtta 164  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||    
T  15271078 gcattgatttcataaattttgacaaaaacttactatttaaagtta 15271122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 24457910 - 24457968
Alignment:
Q  143 aaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttcc 201  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||| | | |||||||||||||    
T  24457910 aaaaacttactatttaaagtttttaaaaaatgtcctaaggataatagttaacattttcc 24457968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 27501781 - 27501703
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| |||||||| || ||||| || ||||||||||||    
T  27501781 gcattaatttcataaactttgacaaaaacttactatttaaagttactaaacaatgtcttaagggcatttgttaacattt 27501703  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 18375122 - 18375183
Alignment:
Q  120 gcattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaag 181  Q
    |||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||    
T  18375122 gcattgatttcataaactttgacaaaaacttactatttaaagtcactaaacaatgtcctaag 18375183  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 63946 - 64022
Alignment:
Q  121 cattgatttcataaactttgacaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattttcc 201  Q
    |||| |||||||||| ||||||||||||||| ||   ||||||| |||||||| | ||||| |||||||||||||| ||||    
T  63946 cattaatttcataaattttgacaaaaacttacta---aaagttactaaacaatgt-ctaagaacacttgttaacatcttcc 64022  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 13530553 - 13530516
Alignment:
Q  165 ttaaacaatatcctaaggacacttgttaacattttcct 202  Q
    |||||||||| | |||||||||||||||||||||||||    
T  13530553 ttaaacaataccttaaggacacttgttaacattttcct 13530516  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 28572589 - 28572532
Alignment:
Q  141 acaaaaacttattatttaaagttattaaacaatatcctaaggacacttgttaacattt 198  Q
    ||||||||||| ||||||||||| ||||| | |||||| ||| |||| ||||||||||    
T  28572589 acaaaaacttactatttaaagttgttaaaaagtatccttagggcactcgttaacattt 28572532  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 67442 - 67394
Alignment:
Q  153 tatttaaagttattaaacaatatcctaaggacacttgttaacattttcc 201  Q
    |||||||||||| ||||||||| |||||  | |||||||||||||||||    
T  67442 tatttaaagttactaaacaataccctaaaaatacttgttaacattttcc 67394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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