View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20161_high_3 (Length: 313)
Name: NF20161_high_3
Description: NF20161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20161_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 27205522 - 27205226
Alignment:
| Q |
2 |
aatggaaagtacaatgatagtaaaccatgtgagtgaagtacactttctagttgaatacttgcatgcattttgaagcaatgtgtatggagtttattctatg |
101 |
Q |
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| T |
27205522 |
aatggaaagtacaatgatagtaaaccatgtgagtgaagtacactttctagttgaatacttgcatgcattttgaagcaatgtgtatggagtttattctatg |
27205423 |
T |
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| Q |
102 |
agatggacaaaaggttttccacgtacatactgcaatcaagaccattatattaaggtatatttagttactattttgaacatgtaactcattcttccacaca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27205422 |
agatggacaaaaggttttccacgtacatactgcaatcaagaccattataataaggtatatttagttactattttgaacatgtaactcattcttccacaca |
27205323 |
T |
|
| Q |
202 |
acccaatagttacgaattgttaatgtttcacaaaaattagatttagatccaacttgaaaagcattgtattttgtggtagcatttgaacaggttatat |
298 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27205322 |
acccaatagttacgaatttttaatgtttcacaaaaattagatttagatccaacttgaaaagcattgtattttgtggtagcatttgaacaggttatat |
27205226 |
T |
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