View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20161_high_6 (Length: 236)
Name: NF20161_high_6
Description: NF20161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20161_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 8747693 - 8747565
Alignment:
| Q |
16 |
tcacacacggtagacattcttatgatgttagtttgaaagtctcatcatggttttggccccttgaatagcatgttgctgtgtgaagctacttcatcgagtt |
115 |
Q |
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| T |
8747693 |
tcacacaccgtggacattcatatcatgttaatttgaaagtctcatcatggttttggccccttgaagagcatgttgctacgtgaagcttcttcatcaaatt |
8747594 |
T |
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| Q |
116 |
tccctcattctacattgctaactcatgtt |
144 |
Q |
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| T |
8747593 |
tccctcattctacattgctaactaatgtt |
8747565 |
T |
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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 47669983 - 47670108
Alignment:
| Q |
20 |
acacggtagacattcttatgatgttagtttgaaagtctcatcatggttttggccccttgaatagcatgttgctgtgtgaagctacttcatcgagtttccc |
119 |
Q |
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| T |
47669983 |
acaccgtagacattcttatcatgttaatttgaaagtttcgtaatgattttggccacttgaagagcatgttgctgcgtgaagcttcttcatcatatttccc |
47670082 |
T |
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| Q |
120 |
tcattctacattgctaactcatgtta |
145 |
Q |
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| T |
47670083 |
tcattctaaattgctaacttatgtta |
47670108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 47671476 - 47671527
Alignment:
| Q |
168 |
tgaatatgaaatgttcttttccgagctacatatatgattccatgttaatacat |
220 |
Q |
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| T |
47671476 |
tgaatatgaaatgtt-tttcccgagctccatatatgattctatgtcaatacat |
47671527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 25798200 - 25798268
Alignment:
| Q |
153 |
ttttcaaggttcaaatgaatatgaaatgttcttttccga-gctacatatatgattccatgttaatacat |
220 |
Q |
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| T |
25798200 |
ttttcaaggatcaaatgaatatgacatgttttttttctaagctacatatatgattctatgttaatacat |
25798268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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