View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20161_low_1 (Length: 855)
Name: NF20161_low_1
Description: NF20161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20161_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 735; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 9 - 821
Target Start/End: Original strand, 30128252 - 30129066
Alignment:
| Q |
9 |
gagtgaaaagaacacaaaataaagtatatagtgatgaaaattttgtgctgggatcccgaatattgtctcttgaggtagtgtgtgccccattatccctcaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128252 |
gagtgaaaagaacacaaaataaagtatatagtgatgaaaattttgtgctgggatcccgaatattgtctcttgaggtagtgtgtgccccattatccctcaa |
30128351 |
T |
|
| Q |
109 |
atgtctgcgcttcttctgttgtttgctccagattctgttctggtttttcttagtcattcgatcgagcaagattgtctgaggccttgtttctcaggttctg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30128352 |
atgtctgcgcttcttctgttgtttgctccagattctgttctggtttttcttagtcattcgaccgagcaagattgtctgaggccttgtttctcaggttctg |
30128451 |
T |
|
| Q |
209 |
tttctggtggttgttttgctgttgtactgtcttgttttgtggccttcacggggttctggtttcggctacaacatgctgtgtttgtctgttttgcttacta |
308 |
Q |
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| T |
30128452 |
tttctggtggttgttttgctgttgtactgtcttgttttgtggccttcacggggttctggtttcggctacaacatgctgtgtttgtctgttttgcttacta |
30128551 |
T |
|
| Q |
309 |
tgggtttcgggnnnnnnnnnnnn-gtatcgatgttttgccagtttcagcatcccagtagtggttgttttttgctgtgtttctcttcgggtattccgtcta |
407 |
Q |
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| T |
30128552 |
tgggtttcgggttgttttttttttgtatcgatgttttggtagtttcagcatcctagtagtggttgttttttgctgtgtttctcttcgggtattccgtcta |
30128651 |
T |
|
| Q |
408 |
tataccacatccgatgttttgtatttccctgtgtggcaagattggtgcatctcgtgcaggttttgcttttcaatatactttgctgatagcaaaaatgaat |
507 |
Q |
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| T |
30128652 |
tataccacatccgatgttttgtatttccctgtgtggcaagattggtgcatctcgtgcaggttttgcttttcaatatactttgctgatagcaaaaatgaat |
30128751 |
T |
|
| Q |
508 |
gtgaaatttatgcaaataatataacttgttctgcattaagcttttagtaaataagtggctgcattgcataagcattaaattgtgattttctaggttgaac |
607 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
30128752 |
gtgaaatttatgcaaataatataatttgttctgcattaagcttttagtaaataagtggatacattgcataagcattaaattgtgattttctaggttgaac |
30128851 |
T |
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| Q |
608 |
tctaaagaacaataggttcaaataattgacttttctgctgttaataatgcagttattgttac-taagtggaggcattgcattaaatgtttaaatagataa |
706 |
Q |
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| T |
30128852 |
tctaaagaacaataggttcaaataattgacttttctgctgttaataatgcagttattgttacttaagtggaggcattgcattaaatgtttaaatagataa |
30128951 |
T |
|
| Q |
707 |
gtagctcccaattgattaaggcttgattgacaaggtaaaagttttggttaggtgaacataagcgacttcatgagaaatccatggtttgtggattagttgc |
806 |
Q |
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| T |
30128952 |
gtagctcccaattgattaaggcttgattgacaaggtaaaagttttggttaggtgaacataagcgacttcatgagaaatccatggtttgtggattagttgc |
30129051 |
T |
|
| Q |
807 |
tttatgcattgtcat |
821 |
Q |
| |
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||||||||||||||| |
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| T |
30129052 |
tttatgcattgtcat |
30129066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 628 - 744
Target Start/End: Complemental strand, 4365469 - 4365351
Alignment:
| Q |
628 |
aataattgacttttctgctgttaataatgcagttattgttact-aagtggaggcattgcattaaatgtttaaatagataagtagctc-ccaattgattaa |
725 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||| | |||| || ||||||||| | | |||||| ||||||||||||| ||||||| | |
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| T |
4365469 |
aataattggcttttgtgctgttaataatgcagttactgttaatgaagttgaagcattgcatgagctatttaaaaagataagtagctctgtaattgatgat |
4365370 |
T |
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| Q |
726 |
ggcttgattgacaaggtaa |
744 |
Q |
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||||||||| ||||||||| |
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| T |
4365369 |
ggcttgattcacaaggtaa |
4365351 |
T |
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Back To:
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