View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20161_low_2 (Length: 442)
Name: NF20161_low_2
Description: NF20161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20161_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 57 - 319
Target Start/End: Complemental strand, 12691080 - 12690818
Alignment:
| Q |
57 |
ttcacaatgtcaaagccatgtgagacatcatcaccgttgtcatctgatagcatctcagtttcccgtattcaatgtggtattggacatcatcgacattgtt |
156 |
Q |
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| T |
12691080 |
ttcacaatgtcaaagccatgtgagacatcatcaccgttgtcatctgatagcatctcagtttcccgtattcaatgtggtattggacatcatcgacattgtt |
12690981 |
T |
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| Q |
157 |
gattttggagatgaacgaggtgagttgcctcgggtggaaaatccttgtataatactcttatacaccgagagaaaataaagttgcgataacgacctcacct |
256 |
Q |
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| T |
12690980 |
gattttggagatgaacgaggtgagttgcctcgggtggaaaatccttgtataatactcttatacaccgagagaaaataaagttgcgataacgacctcacct |
12690881 |
T |
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| Q |
257 |
tcgtcgaggagttacatgtttgagttcattggtaatgattatatatatgaaagttaagattta |
319 |
Q |
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| T |
12690880 |
tcgtcgaggagttacatgtttgagttcattggtaatgattatatatatgaaagttaagattta |
12690818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 363 - 429
Target Start/End: Complemental strand, 12690833 - 12690767
Alignment:
| Q |
363 |
tgaaagttaagatttaatgattatatattagaaatctctttagcaacaatgattccaactataatat |
429 |
Q |
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| T |
12690833 |
tgaaagttaagatttaatgattatatattagaaatctctttagcaacaatgattccaactataatat |
12690767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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